Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0003159

Physical Location & Seq

Genomic Coordinates Reverse (-)

33307213 .. 33316741

Gene Structure 9529 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G026230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGACTTACTTTTTCCCTTCCACATCGACACCATGTACCAGAAACTCGTCTGCATACTTGGCAAGGAAGTCTAATATTTCCTTTTACTTTCGAACAAAGACAACCTTTTCTAAGCCTTTTGAATTGAAGTTAAGTTTCAAGGCATGCTTTGCATGTCTAATCCGACTCACTAAAGATCGAGGACAGAAAAATAATTACCTGCAATTTGGGGAATGCTTGGCATTGCTTATTGCTCCATGTCTCCAAAGGACAGTCTATCACCCAAGATTCCAAGAAGCATTAAGAATTTTGATAATCTGCAGCCATCCATCCATTTGGAGCAAATTAATGGGCCGGGTCGGTAACTTAACGCTAATAGATGCATACCGATTTTTACACAAAGAGAAGGACATGGAGCGTGGCTTCTCCTGGTCAGGAAATCCCATTGGAAAGTATAGAGGCAAAAGGATGAGGAAAGACTACTTCATAGCTGCAGAGCAACTCAAAGATAGGATTGTTTCATGTGAGATGCACGGGCAAGGGATGAATTACAAGTTGCATTTCGATGATTGTGGAAATCGTGTTTCTCAGTTGTTACATGTTGAATTAGCTGCCCCAGCTTCACAGTTTCAAAACAATGATATTCTAGAAGACCTCATGATTCAAATTTGTGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003906 GO:0004518 GO:0004519 GO:0004520 GO:0004527 GO:0004529 GO:0004536 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006284 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008296 GO:0008309 GO:0008311 GO:0008408 GO:0009507 GO:0009536 GO:0009987 GO:0016787 GO:0016788 GO:0016796 GO:0016889 GO:0016894 GO:0016895 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:0090305 GO:0140097 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Exo_endo_phos

Protein Analysis

218

Amino Acids

25.29

Weight (kDa)

9.45

Isoelectric Point (pI)

36.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003159)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48425
fragaria_vesca	FvH4_5g07080 FvH4_5g07080 FvH4_5g07080
malus_domestica	MD14G1165700.v1.1
prunus_persica	Prupe.5G159400_v2.0.a1
pyrus_communis	pycom14g13820
rosa_chinensis	RchiOBHm_Chr3g0465631 RchiOBHm_Chr7g0191471
rosa_laevigata	RLG00000004446
rosa_multiflora	Rmu_sc0000550.1_g000024 Rmu_sc0002661.1_g000010 Rmu_sc0003226.1_g000026 Rmu_sc0005734.1_g000004 Rmu_sc0022975.1_g000001 Rmu_sc0031859.1_g000001
rosa_roxburghii	Rroxscaffold_157G00438410 Rroxscaffold_2G00098620 Rroxscaffold_3G00263770 Rroxscaffold_5G00347080 Rroxscaffold_5G00349220 Rroxscaffold_7G00194680
rosa_rugosa	Rorug05G0345200 Rorug06G0510500
rosa_samantha	Rh2AG501600 Rh2CG487600 Rh3BG139700 Rh3BG143200 Rh3DG144500 Rh5BG061000 Rh7AG118600 Rh7BG012100 Rh7BG120600 Rh7CG123400 Rh7DG121500
rosa_wichuraiana	Rw2G044070 Rw7G026230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	207
AcsI	RAATTY	2 cut(s)	285, 645
AfaI	GTAC	1 cut(s)	37
AflIII	ACRYGT	1 cut(s)	577
AgsI	TTSAA	6 cut(s)	122, 127, 139, 584, 611, 644
AjnI	CCWGG	1 cut(s)	407
AluBI	AGCT	3 cut(s)	470, 590, 599
AluI	AGCT	3 cut(s)	470, 590, 599
Alw26I	GTCTC	1 cut(s)	245
AoxI	GGCC	1 cut(s)	331
ApeKI	GCWGC	3 cut(s)	300, 470, 590
ApoI	RAATTY	2 cut(s)	285, 645
AseI	ATTAAT	1 cut(s)	326
AspS9I	GGNCC	1 cut(s)	331
AsuC2I	CCSGG	1 cut(s)	335
AsuHPI	GGTGA	1 cut(s)	251
AsuII	TTCGAA	1 cut(s)	91
BbsI	GAAGAC	1 cut(s)	636
BbvI	GCAGC	3 cut(s)	312, 457, 577
BccI	CCATC	2 cut(s)	312, 316
BciT130I	CCWGG	1 cut(s)	409
BcnI	CCSGG	1 cut(s)	335
BcoDI	GTCTC	1 cut(s)	245
BfaI	CTAG	1 cut(s)	626
BfmI	CTRYAG	2 cut(s)	298, 471
BfuAI	ACCTGC	1 cut(s)	207
BisI	GCNGC	3 cut(s)	301, 471, 591
BlsI	GCNGC	3 cut(s)	302, 472, 592
Bme1390I	CCNGG	2 cut(s)	335, 409
BmgT120I	GGNCC	1 cut(s)	331
BmrFI	CCNGG	2 cut(s)	335, 409
BmsI	GCATC	2 cut(s)	349, 498
BpiI	GAAGAC	1 cut(s)	636
Bpu14I	TTCGAA	1 cut(s)	91
BpuMI	CCSGG	1 cut(s)	335
Bse3DI	GCAATG	1 cut(s)	221
BseBI	CCWGG	1 cut(s)	409
BseGI	GGATG	4 cut(s)	304, 308, 453, 528
BseMI	GCAATG	1 cut(s)	221
BseMII	CTCAG	1 cut(s)	581
BseXI	GCAGC	3 cut(s)	312, 457, 577
BseYI	CCCAGC	1 cut(s)	595
BshFI	GGCC	1 cut(s)	333
BsiSI	CCGG	1 cut(s)	334
BsmAI	GTCTC	1 cut(s)	245
BsmI	GAATGC	1 cut(s)	218
BsnI	GGCC	1 cut(s)	333
Bsp119I	TTCGAA	1 cut(s)	91
Bsp143I	GATC	1 cut(s)	175
BspANI	GGCC	1 cut(s)	333
BspCNI	CTCAG	1 cut(s)	580
BspHI	TCATGA	1 cut(s)	636
BspMAI	CTGCAG	2 cut(s)	302, 475
BspMI	ACCTGC	1 cut(s)	207
BspT104I	TTCGAA	1 cut(s)	91
BsrDI	GCAATG	1 cut(s)	221
BssMI	GATC	1 cut(s)	175
Bst2UI	CCWGG	1 cut(s)	409
Bst4CI	ACNGT	2 cut(s)	253, 606
BstAPI	GCANNNNNTGC	1 cut(s)	149
BstBI	TTCGAA	1 cut(s)	91
BstC8I	GCNNGC	1 cut(s)	145
BstDEI	CTNAG	2 cut(s)	111, 567
BstF5I	GGATG	4 cut(s)	304, 308, 453, 528
BstKTI	GATC	1 cut(s)	178
BstMAI	GTCTC	1 cut(s)	245
BstMBI	GATC	1 cut(s)	175
BstMWI	GCNNNNNNNGC	3 cut(s)	59, 149, 596
BstNI	CCWGG	1 cut(s)	409
BstNSI	RCATGY	3 cut(s)	147, 156, 581
BstSCI	CCNGG	2 cut(s)	333, 407
BstSFI	CTRYAG	2 cut(s)	298, 471
BstV1I	GCAGC	3 cut(s)	312, 457, 577
BstV2I	GAAGAC	1 cut(s)	636
BstXI	CCANNNNNNTGG	1 cut(s)	315
BsuRI	GGCC	1 cut(s)	333
BtsCI	GGATG	4 cut(s)	304, 308, 453, 528
BveI	ACCTGC	1 cut(s)	207
Cac8I	GCNNGC	1 cut(s)	145
CciI	TCATGA	1 cut(s)	636
Cfr13I	GGNCC	1 cut(s)	331
Csp6I	GTAC	1 cut(s)	36
CviAII	CATG	8 cut(s)	33, 144, 153, 237, 391, 501, 578, 637
CviJI	RGCY	7 cut(s)	115, 303, 333, 402, 470, 590, 599
CviKI_1	RGCY	7 cut(s)	115, 303, 333, 402, 470, 590, 599
CviQI	GTAC	1 cut(s)	36
DdeI	CTNAG	2 cut(s)	111, 567
DpnI	GATC	1 cut(s)	177
DpnII	GATC	1 cut(s)	175
EcoRII	CCWGG	1 cut(s)	407
EcoT22I	ATGCAT	1 cut(s)	364
FaeI	CATG	8 cut(s)	36, 147, 156, 240, 394, 504, 581, 640
FalI	AAGNNNNNCTT	4 cut(s)	89, 121, 131, 163
FatI	CATG	8 cut(s)	32, 143, 152, 236, 390, 500, 577, 636
Fnu4HI	GCNGC	3 cut(s)	301, 471, 591
FokI	GGATG	4 cut(s)	291, 295, 460, 535
Fsp4HI	GCNGC	3 cut(s)	301, 471, 591
FspBI	CTAG	1 cut(s)	626
GluI	GCNGC	3 cut(s)	301, 471, 591
GsaI	CCCAGC	1 cut(s)	599
HaeIII	GGCC	1 cut(s)	333
HapII	CCGG	1 cut(s)	334
Hin1II	CATG	8 cut(s)	36, 147, 156, 240, 394, 504, 581, 640
HinfI	GANTC	3 cut(s)	165, 267, 640
HpaII	CCGG	1 cut(s)	334
HphI	GGTGA	1 cut(s)	251
Hpy188I	TCNGA	1 cut(s)	164
Hpy188III	TCNNGA	3 cut(s)	414, 626, 637
HpyAV	CCTTC	2 cut(s)	27, 379
HpyCH4III	ACNGT	2 cut(s)	253, 606
HpyCH4V	TGCA	8 cut(s)	53, 152, 202, 300, 362, 473, 511, 538
HpyF10VI	GCNNNNNNNGC	3 cut(s)	59, 149, 596
HpyF3I	CTNAG	2 cut(s)	111, 567
Hsp92II	CATG	8 cut(s)	36, 147, 156, 240, 394, 504, 581, 640
Kzo9I	GATC	1 cut(s)	175
LmnI	GCTCC	3 cut(s)	238, 318, 394
LpnPI	CCDG	7 cut(s)	52, 212, 347, 394, 399, 421, 609
Lsp1109I	GCAGC	3 cut(s)	312, 457, 577
LweI	GCATC	2 cut(s)	349, 498
MaeI	CTAG	1 cut(s)	626
MaeIII	GTNAC	2 cut(s)	341, 573
MalI	GATC	1 cut(s)	177
MboI	GATC	1 cut(s)	175
MboII	GAAGA	1 cut(s)	641
MluCI	AATT	8 cut(s)	122, 193, 203, 285, 323, 526, 584, 645
MlyI	GAGTC	1 cut(s)	159
MmeI	TCCRAC	1 cut(s)	187
MnlI	CCTC	4 cut(s)	173, 431, 444, 644
Mph1103I	ATGCAT	1 cut(s)	364
MseI	TTAA	4 cut(s)	131, 281, 326, 347
MslI	CAYNNNNRTG	1 cut(s)	543
MspI	CCGG	1 cut(s)	334
MspR9I	CCNGG	2 cut(s)	335, 409
Mva1269I	GAATGC	1 cut(s)	218
MvaI	CCWGG	1 cut(s)	409
MwoI	GCNNNNNNNGC	3 cut(s)	59, 149, 596
NciI	CCSGG	1 cut(s)	335
NdeII	GATC	1 cut(s)	175
NlaIII	CATG	8 cut(s)	36, 147, 156, 240, 394, 504, 581, 640
NsiI	ATGCAT	1 cut(s)	364
NspI	RCATGY	3 cut(s)	147, 156, 581
NspV	TTCGAA	1 cut(s)	91
PaeI	GCATGC	1 cut(s)	147
PagI	TCATGA	1 cut(s)	636
PciI	ACATGT	1 cut(s)	577
PctI	GAATGC	1 cut(s)	218
PfeI	GAWTC	2 cut(s)	267, 640
PkrI	GCNGC	3 cut(s)	302, 472, 592
PleI	GAGTC	1 cut(s)	159
PpsI	GAGTC	1 cut(s)	159
PscI	ACATGT	1 cut(s)	577
PshBI	ATTAAT	1 cut(s)	326
Psp6I	CCWGG	1 cut(s)	407
PspFI	CCCAGC	1 cut(s)	595
PspGI	CCWGG	1 cut(s)	407
PspPI	GGNCC	1 cut(s)	331
PstI	CTGCAG	2 cut(s)	302, 475
RsaI	GTAC	1 cut(s)	37
RsaNI	GTAC	1 cut(s)	36
RseI	CAYNNNNRTG	1 cut(s)	543
SaqAI	TTAA	4 cut(s)	131, 281, 326, 347
SatI	GCNGC	3 cut(s)	301, 471, 591
Sau3AI	GATC	1 cut(s)	175
Sau96I	GGNCC	1 cut(s)	331
SchI	GAGTC	1 cut(s)	159
ScrFI	CCNGG	2 cut(s)	335, 409
SetI	ASST	6 cut(s)	107, 201, 472, 592, 601, 636
SfaNI	GCATC	2 cut(s)	349, 498
SfcI	CTRYAG	2 cut(s)	298, 471
SfuI	TTCGAA	1 cut(s)	91
SmiMI	CAYNNNNRTG	1 cut(s)	543
SphI	GCATGC	1 cut(s)	147
Sse9I	AATT	8 cut(s)	122, 193, 203, 285, 323, 526, 584, 645
SspI	AATATT	1 cut(s)	76
SspMI	CTAG	1 cut(s)	626
StyD4I	CCNGG	2 cut(s)	333, 407
TaaI	ACNGT	2 cut(s)	253, 606
TaqI	TCGA	4 cut(s)	26, 91, 178, 543
TasI	AATT	8 cut(s)	122, 193, 203, 285, 323, 526, 584, 645
TfiI	GAWTC	2 cut(s)	267, 640
Tru1I	TTAA	4 cut(s)	131, 281, 326, 347
Tru9I	TTAA	4 cut(s)	131, 281, 326, 347
TseI	GCWGC	3 cut(s)	300, 470, 590
TspDTI	ATGAA	3 cut(s)	454, 489, 539
VspI	ATTAAT	1 cut(s)	326
XapI	RAATTY	2 cut(s)	285, 645
XbaI	TCTAGA	1 cut(s)	625
XceI	RCATGY	3 cut(s)	147, 156, 581
XspI	CTAG	1 cut(s)	626
Zsp2I	ATGCAT	1 cut(s)	364

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.