Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0003159

Physical Location & Seq

Genomic Coordinates Forward (+)

12170425 .. 12172490

Gene Structure 2066 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG143200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGCTAGGGAGTTCTTCCAGCTCCGGCGCCGACAAATATCCCGATTCTAAGGGGAAAGCTAATAGATGCATACCGATTTTTACACAAAGAGAAGGACATGGAGCGTGGCTTCACCTGGTCAGGAAATCCCTTTGGAAATTTACACCACATAATAAACATACCGGGTGGCTTTCTGGCCGGTATAGAGGCAAAAGGATGAGGACAGAGTACTTCATAGCTGCAGAGAAACTCAAAGATAGGATTGTTTCATGTGAGATGCACTGGCAAGGGATGAATTACAAGGTTGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003906 GO:0004518 GO:0004519 GO:0004520 GO:0004527 GO:0004529 GO:0004536 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006284 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008296 GO:0008309 GO:0008311 GO:0008408 GO:0009507 GO:0009536 GO:0009987 GO:0016787 GO:0016788 GO:0016796 GO:0016889 GO:0016894 GO:0016895 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:0090305 GO:0140097 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Exo_endo_phos

Protein Analysis

96

Amino Acids

11.1

Weight (kDa)

10.13

Isoelectric Point (pI)

26.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003159)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48425
fragaria_vesca	FvH4_5g07080 FvH4_5g07080 FvH4_5g07080
malus_domestica	MD14G1165700.v1.1
prunus_persica	Prupe.5G159400_v2.0.a1
pyrus_communis	pycom14g13820
rosa_chinensis	RchiOBHm_Chr3g0465631 RchiOBHm_Chr7g0191471
rosa_laevigata	RLG00000004446
rosa_multiflora	Rmu_sc0000550.1_g000024 Rmu_sc0002661.1_g000010 Rmu_sc0003226.1_g000026 Rmu_sc0005734.1_g000004 Rmu_sc0022975.1_g000001 Rmu_sc0031859.1_g000001
rosa_roxburghii	Rroxscaffold_157G00438410 Rroxscaffold_2G00098620 Rroxscaffold_3G00263770 Rroxscaffold_5G00347080 Rroxscaffold_5G00349220 Rroxscaffold_7G00194680
rosa_rugosa	Rorug05G0345200 Rorug06G0510500
rosa_samantha	Rh2AG501600 Rh2CG487600 Rh3BG139700 Rh3BG143200 Rh3DG144500 Rh5BG061000 Rh7AG118600 Rh7BG012100 Rh7BG120600 Rh7CG123400 Rh7DG121500
rosa_wichuraiana	Rw2G044070 Rw7G026230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	26
AcoI	YGGCCR	1 cut(s)	175
AcsI	RAATTY	1 cut(s)	137
AcyI	GRCGYC	1 cut(s)	27
AfaI	GTAC	1 cut(s)	209
AjnI	CCWGG	1 cut(s)	114
AluBI	AGCT	3 cut(s)	21, 59, 218
AluI	AGCT	3 cut(s)	21, 59, 218
AoxI	GGCC	1 cut(s)	175
ApeKI	GCWGC	1 cut(s)	218
ApoI	RAATTY	1 cut(s)	137
AspLEI	GCGC	1 cut(s)	29
AsuC2I	CCSGG	1 cut(s)	163
AsuHPI	GGTGA	1 cut(s)	104
BanI	GGYRCC	1 cut(s)	26
BbvI	GCAGC	1 cut(s)	205
BciT130I	CCWGG	1 cut(s)	116
BcnI	CCSGG	1 cut(s)	163
BfaI	CTAG	1 cut(s)	5
BfmI	CTRYAG	1 cut(s)	219
BfoI	RGCGCY	1 cut(s)	30
BisI	GCNGC	1 cut(s)	219
BlsI	GCNGC	1 cut(s)	220
BmcAI	AGTACT	1 cut(s)	209
Bme1390I	CCNGG	2 cut(s)	116, 163
BmiI	GGNNCC	1 cut(s)	28
BmrFI	CCNGG	2 cut(s)	116, 163
BmsI	GCATC	2 cut(s)	56, 246
BpuMI	CCSGG	1 cut(s)	163
BsaHI	GRCGYC	1 cut(s)	27
Bse118I	RCCGGY	1 cut(s)	177
Bse1I	ACTGG	1 cut(s)	266
BseBI	CCWGG	1 cut(s)	116
BseGI	GGATG	2 cut(s)	201, 276
BseNI	ACTGG	1 cut(s)	266
BseXI	GCAGC	1 cut(s)	205
BshFI	GGCC	1 cut(s)	177
BshNI	GGYRCC	1 cut(s)	26
BsiSI	CCGG	3 cut(s)	24, 162, 178
BsnI	GGCC	1 cut(s)	177
BspANI	GGCC	1 cut(s)	177
BspLI	GGNNCC	1 cut(s)	28
BspMAI	CTGCAG	1 cut(s)	223
BspT107I	GGYRCC	1 cut(s)	26
BsrFI	RCCGGY	1 cut(s)	177
BsrI	ACTGG	1 cut(s)	266
BssAI	RCCGGY	1 cut(s)	177
BssNI	GRCGYC	1 cut(s)	27
Bst2UI	CCWGG	1 cut(s)	116
BstACI	GRCGYC	1 cut(s)	27
BstDEI	CTNAG	1 cut(s)	48
BstF5I	GGATG	2 cut(s)	201, 276
BstH2I	RGCGCY	1 cut(s)	30
BstHHI	GCGC	1 cut(s)	29
BstNI	CCWGG	1 cut(s)	116
BstSCI	CCNGG	2 cut(s)	114, 161
BstSFI	CTRYAG	1 cut(s)	219
BstV1I	GCAGC	1 cut(s)	205
BsuRI	GGCC	1 cut(s)	177
BtsCI	GGATG	2 cut(s)	201, 276
BtsIMutI	CAGTG	1 cut(s)	259
CfoI	GCGC	1 cut(s)	29
Cfr10I	RCCGGY	1 cut(s)	177
CsiI	ACCWGGT	1 cut(s)	114
Csp6I	GTAC	1 cut(s)	208
CviAII	CATG	2 cut(s)	98, 249
CviJI	RGCY	7 cut(s)	21, 59, 109, 169, 177, 218, 288
CviKI_1	RGCY	7 cut(s)	21, 59, 109, 169, 177, 218, 288
CviQI	GTAC	1 cut(s)	208
DdeI	CTNAG	1 cut(s)	48
DinI	GGCGCC	1 cut(s)	28
EaeI	YGGCCR	1 cut(s)	175
EcoRII	CCWGG	1 cut(s)	114
EcoT22I	ATGCAT	1 cut(s)	71
EgeI	GGCGCC	1 cut(s)	28
EheI	GGCGCC	1 cut(s)	28
FaeI	CATG	2 cut(s)	101, 252
FaiI	YATR	7 cut(s)	71, 99, 150, 159, 183, 215, 250
FatI	CATG	2 cut(s)	97, 248
Fnu4HI	GCNGC	1 cut(s)	219
FokI	GGATG	2 cut(s)	208, 283
Fsp4HI	GCNGC	1 cut(s)	219
FspBI	CTAG	1 cut(s)	5
GlaI	GCGC	1 cut(s)	28
GluI	GCNGC	1 cut(s)	219
HaeII	RGCGCY	1 cut(s)	30
HaeIII	GGCC	1 cut(s)	177
HapII	CCGG	3 cut(s)	24, 162, 178
HhaI	GCGC	1 cut(s)	29
Hin1I	GRCGYC	1 cut(s)	27
Hin1II	CATG	2 cut(s)	101, 252
Hin6I	GCGC	1 cut(s)	27
HinP1I	GCGC	1 cut(s)	27
HinfI	GANTC	1 cut(s)	44
HpaII	CCGG	3 cut(s)	24, 162, 178
HphI	GGTGA	1 cut(s)	104
Hpy188III	TCNNGA	2 cut(s)	41, 121
HpyAV	CCTTC	1 cut(s)	86
HpyCH4V	TGCA	3 cut(s)	69, 221, 259
HpyF3I	CTNAG	1 cut(s)	48
Hsp92I	GRCGYC	1 cut(s)	27
Hsp92II	CATG	2 cut(s)	101, 252
HspAI	GCGC	1 cut(s)	27
KasI	GGCGCC	1 cut(s)	26
LmnI	GCTCC	2 cut(s)	26, 101
LpnPI	CCDG	9 cut(s)	31, 37, 101, 106, 128, 159, 175, 191, 247
Lsp1109I	GCAGC	1 cut(s)	205
LweI	GCATC	2 cut(s)	56, 246
MabI	ACCWGGT	1 cut(s)	114
MaeI	CTAG	1 cut(s)	5
MboII	GAAGA	1 cut(s)	6
MluCI	AATT	2 cut(s)	137, 274
Mly113I	GGCGCC	1 cut(s)	27
MnlI	CCTC	2 cut(s)	179, 192
Mph1103I	ATGCAT	1 cut(s)	71
MspI	CCGG	3 cut(s)	24, 162, 178
MspR9I	CCNGG	2 cut(s)	116, 163
MvaI	CCWGG	1 cut(s)	116
NarI	GGCGCC	1 cut(s)	27
NciI	CCSGG	1 cut(s)	163
NlaIII	CATG	2 cut(s)	101, 252
NlaIV	GGNNCC	1 cut(s)	28
NsiI	ATGCAT	1 cut(s)	71
PfeI	GAWTC	1 cut(s)	44
PkrI	GCNGC	1 cut(s)	220
PluTI	GGCGCC	1 cut(s)	30
Psp6I	CCWGG	1 cut(s)	114
PspGI	CCWGG	1 cut(s)	114
PspN4I	GGNNCC	1 cut(s)	28
PstI	CTGCAG	1 cut(s)	223
RsaI	GTAC	1 cut(s)	209
RsaNI	GTAC	1 cut(s)	208
SatI	GCNGC	1 cut(s)	219
ScaI	AGTACT	1 cut(s)	209
ScrFI	CCNGG	2 cut(s)	116, 163
SetI	ASST	5 cut(s)	23, 61, 117, 220, 285
SexAI	ACCWGGT	1 cut(s)	114
SfaNI	GCATC	2 cut(s)	56, 246
SfcI	CTRYAG	1 cut(s)	219
SfoI	GGCGCC	1 cut(s)	28
Sse9I	AATT	2 cut(s)	137, 274
SspDI	GGCGCC	1 cut(s)	26
SspMI	CTAG	1 cut(s)	5
StyD4I	CCNGG	2 cut(s)	114, 161
TasI	AATT	2 cut(s)	137, 274
TatI	WGTACW	1 cut(s)	207
TfiI	GAWTC	1 cut(s)	44
TscAI	CASTG	1 cut(s)	266
TseI	GCWGC	1 cut(s)	218
TspDTI	ATGAA	3 cut(s)	202, 237, 287
TspRI	CASTG	1 cut(s)	266
XapI	RAATTY	1 cut(s)	137
XspI	CTAG	1 cut(s)	5
ZrmI	AGTACT	1 cut(s)	209
Zsp2I	ATGCAT	1 cut(s)	71

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.