Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000550.1

Orthogroup ID

OG0003159

Physical Location & Seq

Genomic Coordinates Reverse (-)

67982 .. 69977

Gene Structure 1996 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000550.1_g000024.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

atgctagggagttcttccagctccggcgccgacaaatctcccgattctaaggattcttggtgtttcaatttctatgcgtacaaggccacattcagacaaagcatatatagtgcttttggtttgctgctactgaataatcaaccaagttcagatcagttttctaggggaaagctaatagatgcataccgatttttacacaaaaagaaggacatggagcgtggcttcacctggtcaggaaatcccattggaaagtatagaggcaaaaggatgaggatagactacttcatagctgcagagcaactcaaagataggattgtttcatgtgagatgcacgggcaagggatgaattacaaggttggctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003906 GO:0004518 GO:0004519 GO:0004520 GO:0004527 GO:0004529 GO:0004536 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006284 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008296 GO:0008309 GO:0008311 GO:0008408 GO:0009507 GO:0009536 GO:0009987 GO:0016787 GO:0016788 GO:0016796 GO:0016889 GO:0016894 GO:0016895 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:0090305 GO:0140097 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Exo_endo_phos

Protein Analysis

120

Amino Acids

13.73

Weight (kDa)

9.63

Isoelectric Point (pI)

34.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003159)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48425
fragaria_vesca	FvH4_5g07080 FvH4_5g07080 FvH4_5g07080
malus_domestica	MD14G1165700.v1.1
prunus_persica	Prupe.5G159400_v2.0.a1
pyrus_communis	pycom14g13820
rosa_chinensis	RchiOBHm_Chr3g0465631 RchiOBHm_Chr7g0191471
rosa_laevigata	RLG00000004446
rosa_multiflora	Rmu_sc0000550.1_g000024 Rmu_sc0002661.1_g000010 Rmu_sc0003226.1_g000026 Rmu_sc0005734.1_g000004 Rmu_sc0022975.1_g000001 Rmu_sc0031859.1_g000001
rosa_roxburghii	Rroxscaffold_157G00438410 Rroxscaffold_2G00098620 Rroxscaffold_3G00263770 Rroxscaffold_5G00347080 Rroxscaffold_5G00349220 Rroxscaffold_7G00194680
rosa_rugosa	Rorug05G0345200 Rorug06G0510500
rosa_samantha	Rh2AG501600 Rh2CG487600 Rh3BG139700 Rh3BG143200 Rh3DG144500 Rh5BG061000 Rh7AG118600 Rh7BG012100 Rh7BG120600 Rh7CG123400 Rh7DG121500
rosa_wichuraiana	Rw2G044070 Rw7G026230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	26
AcyI	GRCGYC	1 cut(s)	27
AfaI	GTAC	1 cut(s)	80
AgsI	TTSAA	1 cut(s)	67
AjnI	CCWGG	1 cut(s)	227
AluBI	AGCT	3 cut(s)	21, 172, 290
AluI	AGCT	3 cut(s)	21, 172, 290
AoxI	GGCC	1 cut(s)	84
ApeKI	GCWGC	2 cut(s)	124, 290
AspLEI	GCGC	1 cut(s)	29
AsuHPI	GGTGA	1 cut(s)	217
BanI	GGYRCC	1 cut(s)	26
BbvI	GCAGC	2 cut(s)	111, 277
BciT130I	CCWGG	1 cut(s)	229
BfaI	CTAG	2 cut(s)	5, 162
BfmI	CTRYAG	1 cut(s)	291
BfoI	RGCGCY	1 cut(s)	30
BisI	GCNGC	2 cut(s)	125, 291
BlsI	GCNGC	2 cut(s)	126, 292
Bme1390I	CCNGG	1 cut(s)	229
BmiI	GGNNCC	1 cut(s)	28
BmrFI	CCNGG	1 cut(s)	229
BmsI	GCATC	2 cut(s)	169, 318
BsaHI	GRCGYC	1 cut(s)	27
BseBI	CCWGG	1 cut(s)	229
BseGI	GGATG	2 cut(s)	273, 348
BseXI	GCAGC	2 cut(s)	111, 277
BshFI	GGCC	1 cut(s)	86
BshNI	GGYRCC	1 cut(s)	26
BsiSI	CCGG	1 cut(s)	24
BsnI	GGCC	1 cut(s)	86
Bsp143I	GATC	1 cut(s)	151
BspANI	GGCC	1 cut(s)	86
BspLI	GGNNCC	1 cut(s)	28
BspMAI	CTGCAG	1 cut(s)	295
BspT107I	GGYRCC	1 cut(s)	26
BssMI	GATC	1 cut(s)	151
BssNI	GRCGYC	1 cut(s)	27
Bst2UI	CCWGG	1 cut(s)	229
BstACI	GRCGYC	1 cut(s)	27
BstDEI	CTNAG	1 cut(s)	48
BstF5I	GGATG	2 cut(s)	273, 348
BstH2I	RGCGCY	1 cut(s)	30
BstHHI	GCGC	1 cut(s)	29
BstKTI	GATC	1 cut(s)	154
BstMBI	GATC	1 cut(s)	151
BstMWI	GCNNNNNNNGC	1 cut(s)	83
BstNI	CCWGG	1 cut(s)	229
BstSCI	CCNGG	1 cut(s)	227
BstSFI	CTRYAG	1 cut(s)	291
BstV1I	GCAGC	2 cut(s)	111, 277
BsuRI	GGCC	1 cut(s)	86
BtsCI	GGATG	2 cut(s)	273, 348
CfoI	GCGC	1 cut(s)	29
CsiI	ACCWGGT	1 cut(s)	227
Csp6I	GTAC	1 cut(s)	79
CviAII	CATG	2 cut(s)	211, 321
CviJI	RGCY	6 cut(s)	21, 86, 172, 222, 290, 360
CviKI_1	RGCY	6 cut(s)	21, 86, 172, 222, 290, 360
CviQI	GTAC	1 cut(s)	79
DdeI	CTNAG	1 cut(s)	48
DinI	GGCGCC	1 cut(s)	28
DpnI	GATC	1 cut(s)	153
DpnII	GATC	1 cut(s)	151
EcoRII	CCWGG	1 cut(s)	227
EcoT22I	ATGCAT	1 cut(s)	184
EgeI	GGCGCC	1 cut(s)	28
EheI	GGCGCC	1 cut(s)	28
FaeI	CATG	2 cut(s)	214, 324
FaiI	YATR	9 cut(s)	75, 104, 106, 108, 184, 212, 255, 287, 322
FatI	CATG	2 cut(s)	210, 320
Fnu4HI	GCNGC	2 cut(s)	125, 291
FokI	GGATG	2 cut(s)	280, 355
Fsp4HI	GCNGC	2 cut(s)	125, 291
FspBI	CTAG	2 cut(s)	5, 162
GlaI	GCGC	1 cut(s)	28
GluI	GCNGC	2 cut(s)	125, 291
HaeII	RGCGCY	1 cut(s)	30
HaeIII	GGCC	1 cut(s)	86
HapII	CCGG	1 cut(s)	24
HhaI	GCGC	1 cut(s)	29
Hin1I	GRCGYC	1 cut(s)	27
Hin1II	CATG	2 cut(s)	214, 324
Hin6I	GCGC	1 cut(s)	27
HinP1I	GCGC	1 cut(s)	27
HinfI	GANTC	2 cut(s)	44, 53
HpaII	CCGG	1 cut(s)	24
HphI	GGTGA	1 cut(s)	217
Hpy188I	TCNGA	2 cut(s)	95, 151
Hpy188III	TCNNGA	2 cut(s)	41, 234
HpyAV	CCTTC	1 cut(s)	199
HpyCH4V	TGCA	3 cut(s)	182, 293, 331
HpyF10VI	GCNNNNNNNGC	1 cut(s)	83
HpyF3I	CTNAG	1 cut(s)	48
Hsp92I	GRCGYC	1 cut(s)	27
Hsp92II	CATG	2 cut(s)	214, 324
HspAI	GCGC	1 cut(s)	27
KasI	GGCGCC	1 cut(s)	26
Kzo9I	GATC	1 cut(s)	151
LmnI	GCTCC	2 cut(s)	26, 214
LpnPI	CCDG	5 cut(s)	31, 37, 214, 219, 241
Lsp1109I	GCAGC	2 cut(s)	111, 277
LweI	GCATC	2 cut(s)	169, 318
MabI	ACCWGGT	1 cut(s)	227
MaeI	CTAG	2 cut(s)	5, 162
MalI	GATC	1 cut(s)	153
MboI	GATC	1 cut(s)	151
MboII	GAAGA	1 cut(s)	6
MluCI	AATT	2 cut(s)	67, 346
Mly113I	GGCGCC	1 cut(s)	27
MnlI	CCTC	2 cut(s)	251, 264
Mph1103I	ATGCAT	1 cut(s)	184
MspI	CCGG	1 cut(s)	24
MspR9I	CCNGG	1 cut(s)	229
MvaI	CCWGG	1 cut(s)	229
MwoI	GCNNNNNNNGC	1 cut(s)	83
NarI	GGCGCC	1 cut(s)	27
NdeII	GATC	1 cut(s)	151
NlaIII	CATG	2 cut(s)	214, 324
NlaIV	GGNNCC	1 cut(s)	28
NsiI	ATGCAT	1 cut(s)	184
PfeI	GAWTC	2 cut(s)	44, 53
PkrI	GCNGC	2 cut(s)	126, 292
PluTI	GGCGCC	1 cut(s)	30
Psp6I	CCWGG	1 cut(s)	227
PspGI	CCWGG	1 cut(s)	227
PspN4I	GGNNCC	1 cut(s)	28
PstI	CTGCAG	1 cut(s)	295
RsaI	GTAC	1 cut(s)	80
RsaNI	GTAC	1 cut(s)	79
SatI	GCNGC	2 cut(s)	125, 291
Sau3AI	GATC	1 cut(s)	151
ScrFI	CCNGG	1 cut(s)	229
SetI	ASST	5 cut(s)	23, 174, 230, 292, 357
SexAI	ACCWGGT	1 cut(s)	227
SfaNI	GCATC	2 cut(s)	169, 318
SfcI	CTRYAG	1 cut(s)	291
SfoI	GGCGCC	1 cut(s)	28
Sse9I	AATT	2 cut(s)	67, 346
SspDI	GGCGCC	1 cut(s)	26
SspMI	CTAG	2 cut(s)	5, 162
StyD4I	CCNGG	1 cut(s)	227
TasI	AATT	2 cut(s)	67, 346
TfiI	GAWTC	2 cut(s)	44, 53
TseI	GCWGC	2 cut(s)	124, 290
TspDTI	ATGAA	3 cut(s)	274, 309, 359
XspI	CTAG	2 cut(s)	5, 162
Zsp2I	ATGCAT	1 cut(s)	184

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.