Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0003159

Physical Location & Seq

Genomic Coordinates Reverse (-)

5038021 .. 5039531

Gene Structure 1511 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG061000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 231 bp

ATGACGGGAGTCTCGACTACGTACGTGGGGTTTATTGAGAAGGAAAATGATTTAATCCCTATGGGAAAGCTAATAGATGCATACCGATTTTTACACAAAGAGAAGGACATGGAGCGTGGCTTCTCCTGGTCAGGAAATCCCATTGGAAAGCAAGACCATATGGTTCATGCACATAAGAACTTGCCGTTGAAAATAAATTGGATTACTGTTGTGTTGGTCGAGTTGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003906 GO:0004518 GO:0004519 GO:0004520 GO:0004527 GO:0004529 GO:0004536 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006284 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008296 GO:0008309 GO:0008311 GO:0008408 GO:0009507 GO:0009536 GO:0009987 GO:0016787 GO:0016788 GO:0016796 GO:0016889 GO:0016894 GO:0016895 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:0090305 GO:0140097 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Exo_endo_phos

Protein Analysis

76

Amino Acids

8.77

Weight (kDa)

8.06

Isoelectric Point (pI)

12.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003159)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48425
fragaria_vesca	FvH4_5g07080 FvH4_5g07080 FvH4_5g07080
malus_domestica	MD14G1165700.v1.1
prunus_persica	Prupe.5G159400_v2.0.a1
pyrus_communis	pycom14g13820
rosa_chinensis	RchiOBHm_Chr3g0465631 RchiOBHm_Chr7g0191471
rosa_laevigata	RLG00000004446
rosa_multiflora	Rmu_sc0000550.1_g000024 Rmu_sc0002661.1_g000010 Rmu_sc0003226.1_g000026 Rmu_sc0005734.1_g000004 Rmu_sc0022975.1_g000001 Rmu_sc0031859.1_g000001
rosa_roxburghii	Rroxscaffold_157G00438410 Rroxscaffold_2G00098620 Rroxscaffold_3G00263770 Rroxscaffold_5G00347080 Rroxscaffold_5G00349220 Rroxscaffold_7G00194680
rosa_rugosa	Rorug05G0345200 Rorug06G0510500
rosa_samantha	Rh2AG501600 Rh2CG487600 Rh3BG139700 Rh3BG143200 Rh3DG144500 Rh5BG061000 Rh7AG118600 Rh7BG012100 Rh7BG120600 Rh7CG123400 Rh7DG121500
rosa_wichuraiana	Rw2G044070 Rw7G026230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	23
AgsI	TTSAA	2 cut(s)	190, 226
AjnI	CCWGG	1 cut(s)	125
AluBI	AGCT	1 cut(s)	70
AluI	AGCT	1 cut(s)	70
Alw26I	GTCTC	1 cut(s)	16
BceAI	ACGGC	1 cut(s)	169
BciT130I	CCWGG	1 cut(s)	127
BcoDI	GTCTC	1 cut(s)	16
Bme1390I	CCNGG	1 cut(s)	127
BmrFI	CCNGG	1 cut(s)	127
BmsI	GCATC	1 cut(s)	67
BoxI	GACNNNNGTC	1 cut(s)	8
BsaAI	YACGTR	2 cut(s)	21, 25
BseBI	CCWGG	1 cut(s)	127
BsiWI	CGTACG	1 cut(s)	21
BsmAI	GTCTC	1 cut(s)	16
Bst2UI	CCWGG	1 cut(s)	127
Bst4CI	ACNGT	1 cut(s)	208
BstBAI	YACGTR	2 cut(s)	21, 25
BstMAI	GTCTC	1 cut(s)	16
BstNI	CCWGG	1 cut(s)	127
BstPAI	GACNNNNGTC	1 cut(s)	8
BstSCI	CCNGG	1 cut(s)	125
BstSNI	TACGTA	1 cut(s)	21
Csp6I	GTAC	1 cut(s)	22
CviAII	CATG	2 cut(s)	109, 167
CviJI	RGCY	2 cut(s)	70, 120
CviKI_1	RGCY	2 cut(s)	70, 120
CviQI	GTAC	1 cut(s)	22
Eco105I	TACGTA	1 cut(s)	21
EcoRII	CCWGG	1 cut(s)	125
EcoT22I	ATGCAT	1 cut(s)	82
FaeI	CATG	2 cut(s)	112, 170
FaiI	YATR	7 cut(s)	62, 82, 110, 159, 161, 168, 174
FatI	CATG	2 cut(s)	108, 166
FauNDI	CATATG	1 cut(s)	159
Hin1II	CATG	2 cut(s)	112, 170
HinfI	GANTC	1 cut(s)	9
Hpy188III	TCNNGA	2 cut(s)	13, 132
HpyAV	CCTTC	2 cut(s)	34, 97
HpyCH4III	ACNGT	1 cut(s)	208
HpyCH4IV	ACGT	2 cut(s)	20, 24
HpyCH4V	TGCA	2 cut(s)	80, 170
HpySE526I	ACGT	2 cut(s)	20, 24
Hsp92II	CATG	2 cut(s)	112, 170
LmnI	GCTCC	1 cut(s)	112
LpnPI	CCDG	3 cut(s)	112, 117, 139
LweI	GCATC	1 cut(s)	67
MaeII	ACGT	2 cut(s)	20, 24
MluCI	AATT	1 cut(s)	196
MlyI	GAGTC	1 cut(s)	18
Mph1103I	ATGCAT	1 cut(s)	82
MseI	TTAA	1 cut(s)	53
MspR9I	CCNGG	1 cut(s)	127
MvaI	CCWGG	1 cut(s)	127
NdeI	CATATG	1 cut(s)	159
NlaIII	CATG	2 cut(s)	112, 170
NsiI	ATGCAT	1 cut(s)	82
PcsI	WCGNNNNNNNCGW	1 cut(s)	11
Pfl23II	CGTACG	1 cut(s)	21
PleI	GAGTC	1 cut(s)	17
PpsI	GAGTC	1 cut(s)	17
Ppu21I	YACGTR	2 cut(s)	21, 25
PshAI	GACNNNNGTC	1 cut(s)	8
Psp6I	CCWGG	1 cut(s)	125
PspGI	CCWGG	1 cut(s)	125
PspLI	CGTACG	1 cut(s)	21
RsaI	GTAC	1 cut(s)	23
RsaNI	GTAC	1 cut(s)	22
SaqAI	TTAA	1 cut(s)	53
SchI	GAGTC	1 cut(s)	18
ScrFI	CCNGG	1 cut(s)	127
SetI	ASST	3 cut(s)	23, 27, 72
SfaNI	GCATC	1 cut(s)	67
SnaBI	TACGTA	1 cut(s)	21
Sse9I	AATT	1 cut(s)	196
StyD4I	CCNGG	1 cut(s)	125
TaaI	ACNGT	1 cut(s)	208
TaiI	ACGT	2 cut(s)	23, 27
TaqI	TCGA	2 cut(s)	14, 219
TasI	AATT	1 cut(s)	196
Tru1I	TTAA	1 cut(s)	53
Tru9I	TTAA	1 cut(s)	53
TspDTI	ATGAA	1 cut(s)	155
Zsp2I	ATGCAT	1 cut(s)	82

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.