Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003226.1

Orthogroup ID

OG0003159

Physical Location & Seq

Genomic Coordinates Forward (+)

124298 .. 127324

Gene Structure 3027 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003226.1_g000026.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

atgagactcttttacggcgcacatgatatgcacactgatccttggtgtttgaatttctatgcgtacaaggccacattcagacaaagcatagatagtccttttggtttgctgctactgaataatcaaccaagttcagatcagttttctaggggaaagctaatagatgcataccgatttttacacaaagagaaggacatggagcgtggcttctcctggtcaggaaatcccattggaaagtatagaggcaaaaggatgaggatagactacttcatagctgcagagcaactcaaagataggattgtttcctgtgagatgcacgggcaagggatgaattacaaggcagtagaagacgccccattcttccgtgaccttctcattcgattgctgccagaacaatccaggtcgtttctgctcctactcttttccacaattttggccctgccgttcagtcgttctagaatctgcgtagtgtatggatttgttgcgtggcttctagagaaagcacagtggaaagagagagagactccatcgagtgcagccactagccagacacaaacggttcattctacattcggttttgttctcggatacagacgcagcgtgaagaaacccctgaggttgtttttgtgttctgtgtttgatagagagagagagaaattagatccagagatagagagagacggagaaggagagacagcgaaagagaatcagagaggaggcccatcgggatttcgtcaaggttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003906 GO:0004518 GO:0004519 GO:0004520 GO:0004527 GO:0004529 GO:0004536 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006284 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008296 GO:0008309 GO:0008311 GO:0008408 GO:0009507 GO:0009536 GO:0009987 GO:0016787 GO:0016788 GO:0016796 GO:0016889 GO:0016894 GO:0016895 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:0090305 GO:0140097 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Exo_endo_phos

Protein Analysis

247

Amino Acids

28.66

Weight (kDa)

9.35

Isoelectric Point (pI)

47.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003159)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48425
fragaria_vesca	FvH4_5g07080 FvH4_5g07080 FvH4_5g07080
malus_domestica	MD14G1165700.v1.1
prunus_persica	Prupe.5G159400_v2.0.a1
pyrus_communis	pycom14g13820
rosa_chinensis	RchiOBHm_Chr3g0465631 RchiOBHm_Chr7g0191471
rosa_laevigata	RLG00000004446
rosa_multiflora	Rmu_sc0000550.1_g000024 Rmu_sc0002661.1_g000010 Rmu_sc0003226.1_g000026 Rmu_sc0005734.1_g000004 Rmu_sc0022975.1_g000001 Rmu_sc0031859.1_g000001
rosa_roxburghii	Rroxscaffold_157G00438410 Rroxscaffold_2G00098620 Rroxscaffold_3G00263770 Rroxscaffold_5G00347080 Rroxscaffold_5G00349220 Rroxscaffold_7G00194680
rosa_rugosa	Rorug05G0345200 Rorug06G0510500
rosa_samantha	Rh2AG501600 Rh2CG487600 Rh3BG139700 Rh3BG143200 Rh3DG144500 Rh5BG061000 Rh7AG118600 Rh7BG012100 Rh7BG120600 Rh7CG123400 Rh7DG121500
rosa_wichuraiana	Rw2G044070 Rw7G026230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	32, 656
AcsI	RAATTY	1 cut(s)	52
AcyI	GRCGYC	1 cut(s)	351
AfaI	GTAC	1 cut(s)	65
AgsI	TTSAA	1 cut(s)	52
AjnI	CCWGG	2 cut(s)	212, 398
AluBI	AGCT	2 cut(s)	157, 275
AluI	AGCT	2 cut(s)	157, 275
Alw26I	GTCTC	3 cut(s)	515, 672, 686
AlwI	GGATC	2 cut(s)	32, 656
AoxI	GGCC	3 cut(s)	69, 435, 718
ApeKI	GCWGC	5 cut(s)	109, 275, 385, 536, 597
ApoI	RAATTY	1 cut(s)	52
AspLEI	GCGC	1 cut(s)	20
AspS9I	GGNCC	2 cut(s)	436, 719
AxyI	CCTNAGG	1 cut(s)	614
BbsI	GAAGAC	1 cut(s)	354
BbvI	GCAGC	5 cut(s)	96, 262, 372, 548, 609
BccI	CCATC	2 cut(s)	535, 730
BceAI	ACGGC	2 cut(s)	31, 427
BciT130I	CCWGG	2 cut(s)	214, 400
BciVI	GTATCC	1 cut(s)	581
BcoDI	GTCTC	3 cut(s)	515, 672, 686
BfaI	CTAG	4 cut(s)	147, 456, 494, 543
BfmI	CTRYAG	1 cut(s)	276
BfuI	GTATCC	1 cut(s)	581
BisI	GCNGC	5 cut(s)	110, 276, 386, 537, 598
BlsI	GCNGC	5 cut(s)	111, 277, 387, 538, 599
Bme1390I	CCNGG	2 cut(s)	214, 400
BmgT120I	GGNCC	2 cut(s)	436, 719
BmrFI	CCNGG	2 cut(s)	214, 400
BmsI	GCATC	2 cut(s)	154, 303
BpiI	GAAGAC	1 cut(s)	354
BplI	GAGNNNNNCTC	2 cut(s)	508, 540
BsaHI	GRCGYC	1 cut(s)	351
BsaJI	CCNNGG	1 cut(s)	41
Bse21I	CCTNAGG	1 cut(s)	614
BseBI	CCWGG	2 cut(s)	214, 400
BseDI	CCNNGG	1 cut(s)	41
BseGI	GGATG	2 cut(s)	258, 333
BseMII	CTCAG	1 cut(s)	605
BseRI	GAGGAG	1 cut(s)	729
BseXI	GCAGC	5 cut(s)	96, 262, 372, 548, 609
BsgI	GTGCAG	1 cut(s)	555
BshFI	GGCC	3 cut(s)	71, 437, 720
BsmAI	GTCTC	3 cut(s)	515, 672, 686
BsmBI	CGTCTC	1 cut(s)	672
BsnI	GGCC	3 cut(s)	71, 437, 720
Bsp143I	GATC	3 cut(s)	37, 136, 661
BspANI	GGCC	3 cut(s)	71, 437, 720
BspCNI	CTCAG	1 cut(s)	606
BspMAI	CTGCAG	1 cut(s)	280
BspPI	GGATC	2 cut(s)	32, 656
BssECI	CCNNGG	1 cut(s)	41
BssMI	GATC	3 cut(s)	37, 136, 661
BssNI	GRCGYC	1 cut(s)	351
BssT1I	CCWWGG	1 cut(s)	41
Bst2UI	CCWGG	2 cut(s)	214, 400
Bst4CI	ACNGT	2 cut(s)	507, 559
BstACI	GRCGYC	1 cut(s)	351
BstDEI	CTNAG	1 cut(s)	614
BstF5I	GGATG	2 cut(s)	258, 333
BstHHI	GCGC	1 cut(s)	20
BstKTI	GATC	3 cut(s)	40, 139, 664
BstMAI	GTCTC	3 cut(s)	515, 672, 686
BstMBI	GATC	3 cut(s)	37, 136, 661
BstMWI	GCNNNNNNNGC	1 cut(s)	68
BstNI	CCWGG	2 cut(s)	214, 400
BstSCI	CCNGG	2 cut(s)	212, 398
BstSFI	CTRYAG	1 cut(s)	276
BstV1I	GCAGC	5 cut(s)	96, 262, 372, 548, 609
BstV2I	GAAGAC	1 cut(s)	354
BstX2I	RGATCY	1 cut(s)	661
BstXI	CCANNNNNNTGG	1 cut(s)	433
BstYI	RGATCY	1 cut(s)	661
Bsu36I	CCTNAGG	1 cut(s)	614
BsuI	GTATCC	1 cut(s)	581
BsuRI	GGCC	3 cut(s)	71, 437, 720
BtsCI	GGATG	2 cut(s)	258, 333
BtsIMutI	CAGTG	2 cut(s)	33, 512
CfoI	GCGC	1 cut(s)	20
Cfr13I	GGNCC	2 cut(s)	436, 719
CseI	GACGC	2 cut(s)	359, 603
Csp6I	GTAC	1 cut(s)	64
CviAII	CATG	2 cut(s)	23, 196
CviJI	RGCY	9 cut(s)	71, 157, 207, 275, 437, 490, 539, 546, 720
CviKI_1	RGCY	9 cut(s)	71, 157, 207, 275, 437, 490, 539, 546, 720
CviQI	GTAC	1 cut(s)	64
DdeI	CTNAG	1 cut(s)	614
DpnI	GATC	3 cut(s)	39, 138, 663
DpnII	GATC	3 cut(s)	37, 136, 661
Eco130I	CCWWGG	1 cut(s)	41
Eco81I	CCTNAGG	1 cut(s)	614
EcoRII	CCWGG	2 cut(s)	212, 398
EcoT14I	CCWWGG	1 cut(s)	41
EcoT22I	ATGCAT	1 cut(s)	169
ErhI	CCWWGG	1 cut(s)	41
Esp3I	CGTCTC	1 cut(s)	672
FaeI	CATG	2 cut(s)	26, 199
FaiI	YATR	9 cut(s)	24, 29, 60, 89, 169, 197, 240, 272, 474
FatI	CATG	2 cut(s)	22, 195
Fnu4HI	GCNGC	5 cut(s)	110, 276, 386, 537, 598
FokI	GGATG	2 cut(s)	265, 340
Fsp4HI	GCNGC	5 cut(s)	110, 276, 386, 537, 598
FspBI	CTAG	4 cut(s)	147, 456, 494, 543
GlaI	GCGC	1 cut(s)	19
GluI	GCNGC	5 cut(s)	110, 276, 386, 537, 598
HaeIII	GGCC	3 cut(s)	71, 437, 720
HgaI	GACGC	2 cut(s)	359, 603
HhaI	GCGC	1 cut(s)	20
Hin1I	GRCGYC	1 cut(s)	351
Hin1II	CATG	2 cut(s)	26, 199
Hin6I	GCGC	1 cut(s)	18
HinP1I	GCGC	1 cut(s)	18
HinfI	GANTC	4 cut(s)	6, 459, 523, 706
Hpy188I	TCNGA	4 cut(s)	80, 136, 587, 711
Hpy188III	TCNNGA	5 cut(s)	219, 456, 494, 665, 726
HpyAV	CCTTC	3 cut(s)	184, 380, 680
HpyCH4III	ACNGT	2 cut(s)	507, 559
HpyCH4V	TGCA	5 cut(s)	31, 167, 278, 316, 536
HpyF10VI	GCNNNNNNNGC	1 cut(s)	68
HpyF3I	CTNAG	1 cut(s)	614
Hsp92I	GRCGYC	1 cut(s)	351
Hsp92II	CATG	2 cut(s)	26, 199
HspAI	GCGC	1 cut(s)	18
Kzo9I	GATC	3 cut(s)	37, 136, 661
LmnI	GCTCC	2 cut(s)	199, 417
Lsp1109I	GCAGC	5 cut(s)	96, 262, 372, 548, 609
LweI	GCATC	2 cut(s)	154, 303
MaeI	CTAG	4 cut(s)	147, 456, 494, 543
MaeIII	GTNAC	1 cut(s)	365
MalI	GATC	3 cut(s)	39, 138, 663
MboI	GATC	3 cut(s)	37, 136, 661
MboII	GAAGA	3 cut(s)	352, 359, 616
MflI	RGATCY	1 cut(s)	661
MluCI	AATT	4 cut(s)	52, 331, 429, 656
MlyI	GAGTC	1 cut(s)	517
MnlI	CCTC	5 cut(s)	236, 249, 609, 707, 710
Mph1103I	ATGCAT	1 cut(s)	169
MspR9I	CCNGG	2 cut(s)	214, 400
MvaI	CCWGG	2 cut(s)	214, 400
MwoI	GCNNNNNNNGC	1 cut(s)	68
NdeII	GATC	3 cut(s)	37, 136, 661
NlaIII	CATG	2 cut(s)	26, 199
NmuCI	GTSAC	1 cut(s)	365
NsiI	ATGCAT	1 cut(s)	169
PfeI	GAWTC	2 cut(s)	459, 706
PkrI	GCNGC	5 cut(s)	111, 277, 387, 538, 599
PleI	GAGTC	1 cut(s)	517
PpsI	GAGTC	1 cut(s)	517
Psp6I	CCWGG	2 cut(s)	212, 398
PspGI	CCWGG	2 cut(s)	212, 398
PspPI	GGNCC	2 cut(s)	436, 719
PstI	CTGCAG	1 cut(s)	280
PsuI	RGATCY	1 cut(s)	661
RsaI	GTAC	1 cut(s)	65
RsaNI	GTAC	1 cut(s)	64
SatI	GCNGC	5 cut(s)	110, 276, 386, 537, 598
Sau3AI	GATC	3 cut(s)	37, 136, 661
Sau96I	GGNCC	2 cut(s)	436, 719
SchI	GAGTC	1 cut(s)	517
ScrFI	CCNGG	2 cut(s)	214, 400
SetI	ASST	6 cut(s)	159, 277, 372, 404, 620, 742
SfaNI	GCATC	2 cut(s)	154, 303
SfcI	CTRYAG	1 cut(s)	276
Sse9I	AATT	4 cut(s)	52, 331, 429, 656
SspMI	CTAG	4 cut(s)	147, 456, 494, 543
StyD4I	CCNGG	2 cut(s)	212, 398
StyI	CCWWGG	1 cut(s)	41
TaaI	ACNGT	2 cut(s)	507, 559
TaqI	TCGA	2 cut(s)	379, 530
TasI	AATT	4 cut(s)	52, 331, 429, 656
TfiI	GAWTC	2 cut(s)	459, 706
TscAI	CASTG	2 cut(s)	40, 512
TseFI	GTSAC	1 cut(s)	365
TseI	GCWGC	5 cut(s)	109, 275, 385, 536, 597
Tsp45I	GTSAC	1 cut(s)	365
TspDTI	ATGAA	3 cut(s)	259, 344, 551
TspGWI	ACGGA	2 cut(s)	353, 696
TspRI	CASTG	2 cut(s)	40, 512
XapI	RAATTY	1 cut(s)	52
XbaI	TCTAGA	2 cut(s)	455, 493
XspI	CTAG	4 cut(s)	147, 456, 494, 543
Zsp2I	ATGCAT	1 cut(s)	169

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.