DNA-(apurinic or apyrimidinic site)
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G48425 |
| fragaria_vesca | FvH4_5g07080 FvH4_5g07080 FvH4_5g07080 |
| malus_domestica | MD14G1165700.v1.1 |
| prunus_persica | Prupe.5G159400_v2.0.a1 |
| pyrus_communis | pycom14g13820 |
| rosa_chinensis | RchiOBHm_Chr3g0465631 RchiOBHm_Chr7g0191471 |
| rosa_laevigata | RLG00000004446 |
| rosa_multiflora | Rmu_sc0000550.1_g000024 Rmu_sc0002661.1_g000010 Rmu_sc0003226.1_g000026 Rmu_sc0005734.1_g000004 Rmu_sc0022975.1_g000001 Rmu_sc0031859.1_g000001 |
| rosa_roxburghii | Rroxscaffold_157G00438410 Rroxscaffold_2G00098620 Rroxscaffold_3G00263770 Rroxscaffold_5G00347080 Rroxscaffold_5G00349220 Rroxscaffold_7G00194680 |
| rosa_rugosa | Rorug05G0345200 Rorug06G0510500 |
| rosa_samantha | Rh2AG501600 Rh2CG487600 Rh3BG139700 Rh3BG143200 Rh3DG144500 Rh5BG061000 Rh7AG118600 Rh7BG012100 Rh7BG120600 Rh7CG123400 Rh7DG121500 |
| rosa_wichuraiana | Rw2G044070 Rw7G026230 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 363 |
| AccB1I | GGYRCC | 1 cut(s) | 363 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 623 |
| AccII | CGCG | 1 cut(s) | 228 |
| AcsI | RAATTY | 1 cut(s) | 100 |
| AcuI | CTGAAG | 1 cut(s) | 382 |
| AfaI | GTAC | 1 cut(s) | 365 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 623 |
| AflIII | ACRYGT | 2 cut(s) | 68, 226 |
| AgsI | TTSAA | 3 cut(s) | 29, 76, 292 |
| AjiI | CACGTC | 1 cut(s) | 69 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 603, 635 |
| AluBI | AGCT | 3 cut(s) | 409, 527, 614 |
| AluI | AGCT | 3 cut(s) | 409, 527, 614 |
| Ama87I | CYCGRG | 1 cut(s) | 379 |
| AoxI | GGCC | 1 cut(s) | 591 |
| ApeKI | GCWGC | 1 cut(s) | 527 |
| ApoI | RAATTY | 1 cut(s) | 100 |
| Asp718I | GGTACC | 1 cut(s) | 363 |
| AsuHPI | GGTGA | 1 cut(s) | 147 |
| AsuII | TTCGAA | 1 cut(s) | 222 |
| AvaI | CYCGRG | 1 cut(s) | 379 |
| BanI | GGYRCC | 1 cut(s) | 363 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 356, 388 |
| BbsI | GAAGAC | 1 cut(s) | 646 |
| BbvI | GCAGC | 1 cut(s) | 514 |
| BfaI | CTAG | 2 cut(s) | 81, 93 |
| BfmI | CTRYAG | 2 cut(s) | 358, 528 |
| BisI | GCNGC | 1 cut(s) | 528 |
| BlsI | GCNGC | 1 cut(s) | 529 |
| BmeT110I | CYCGRG | 1 cut(s) | 379 |
| BmgBI | CACGTC | 1 cut(s) | 69 |
| BmiI | GGNNCC | 1 cut(s) | 365 |
| BmsI | GCATC | 3 cut(s) | 352, 406, 555 |
| BpiI | GAAGAC | 1 cut(s) | 646 |
| BpmI | CTGGAG | 1 cut(s) | 600 |
| Bpu14I | TTCGAA | 1 cut(s) | 222 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 623 |
| Bse1I | ACTGG | 3 cut(s) | 192, 594, 617 |
| BseGI | GGATG | 3 cut(s) | 510, 585, 604 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 623 |
| BseNI | ACTGG | 3 cut(s) | 192, 594, 617 |
| BseRI | GAGGAG | 1 cut(s) | 367 |
| BseXI | GCAGC | 1 cut(s) | 514 |
| Bsh1236I | CGCG | 1 cut(s) | 228 |
| BshFI | GGCC | 1 cut(s) | 593 |
| BshNI | GGYRCC | 1 cut(s) | 363 |
| BsiHKCI | CYCGRG | 1 cut(s) | 379 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 623 |
| BsnI | GGCC | 1 cut(s) | 593 |
| BsoBI | CYCGRG | 1 cut(s) | 379 |
| Bsp119I | TTCGAA | 1 cut(s) | 222 |
| Bsp143I | GATC | 1 cut(s) | 628 |
| BspANI | GGCC | 1 cut(s) | 593 |
| BspFNI | CGCG | 1 cut(s) | 228 |
| BspLI | GGNNCC | 1 cut(s) | 365 |
| BspMAI | CTGCAG | 1 cut(s) | 532 |
| BspT104I | TTCGAA | 1 cut(s) | 222 |
| BspT107I | GGYRCC | 1 cut(s) | 363 |
| BsrI | ACTGG | 3 cut(s) | 192, 594, 617 |
| BssMI | GATC | 1 cut(s) | 628 |
| Bst4CI | ACNGT | 3 cut(s) | 118, 268, 390 |
| BstBI | TTCGAA | 1 cut(s) | 222 |
| BstF5I | GGATG | 3 cut(s) | 510, 585, 604 |
| BstFNI | CGCG | 1 cut(s) | 228 |
| BstKTI | GATC | 1 cut(s) | 631 |
| BstMBI | GATC | 1 cut(s) | 628 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 93 |
| BstNSI | RCATGY | 1 cut(s) | 640 |
| BstSFI | CTRYAG | 2 cut(s) | 358, 528 |
| BstUI | CGCG | 1 cut(s) | 228 |
| BstV1I | GCAGC | 1 cut(s) | 514 |
| BstV2I | GAAGAC | 1 cut(s) | 646 |
| BsuRI | GGCC | 1 cut(s) | 593 |
| BtrI | CACGTC | 1 cut(s) | 69 |
| BtsCI | GGATG | 3 cut(s) | 510, 585, 604 |
| BtsIMutI | CAGTG | 1 cut(s) | 114 |
| Csp6I | GTAC | 1 cut(s) | 364 |
| CviAII | CATG | 5 cut(s) | 52, 186, 448, 558, 637 |
| CviJI | RGCY | 9 cut(s) | 87, 96, 184, 384, 409, 459, 527, 593, 614 |
| CviKI_1 | RGCY | 9 cut(s) | 87, 96, 184, 384, 409, 459, 527, 593, 614 |
| CviQI | GTAC | 1 cut(s) | 364 |
| DpnI | GATC | 1 cut(s) | 630 |
| DpnII | GATC | 1 cut(s) | 628 |
| Eco57I | CTGAAG | 1 cut(s) | 382 |
| Eco88I | CYCGRG | 1 cut(s) | 379 |
| EcoT22I | ATGCAT | 2 cut(s) | 6, 421 |
| FaeI | CATG | 5 cut(s) | 55, 189, 451, 561, 640 |
| FatI | CATG | 5 cut(s) | 51, 185, 447, 557, 636 |
| FauNDI | CATATG | 1 cut(s) | 310 |
| Fnu4HI | GCNGC | 1 cut(s) | 528 |
| FokI | GGATG | 3 cut(s) | 517, 591, 592 |
| Fsp4HI | GCNGC | 1 cut(s) | 528 |
| FspBI | CTAG | 2 cut(s) | 81, 93 |
| GluI | GCNGC | 1 cut(s) | 528 |
| GsuI | CTGGAG | 1 cut(s) | 600 |
| HaeIII | GGCC | 1 cut(s) | 593 |
| Hin1II | CATG | 5 cut(s) | 55, 189, 451, 561, 640 |
| HinfI | GANTC | 1 cut(s) | 305 |
| HphI | GGTGA | 1 cut(s) | 147 |
| Hpy166II | GTNNAC | 1 cut(s) | 271 |
| Hpy188I | TCNGA | 3 cut(s) | 164, 348, 662 |
| Hpy188III | TCNNGA | 2 cut(s) | 471, 608 |
| Hpy8I | GTNNAC | 1 cut(s) | 271 |
| Hpy99I | CGWCG | 1 cut(s) | 390 |
| HpyAV | CCTTC | 5 cut(s) | 120, 268, 285, 382, 436 |
| HpyCH4III | ACNGT | 3 cut(s) | 118, 268, 390 |
| HpyCH4IV | ACGT | 1 cut(s) | 68 |
| HpyCH4V | TGCA | 7 cut(s) | 4, 281, 297, 343, 419, 530, 568 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 93 |
| HpySE526I | ACGT | 1 cut(s) | 68 |
| Hsp92II | CATG | 5 cut(s) | 55, 189, 451, 561, 640 |
| KpnI | GGTACC | 1 cut(s) | 367 |
| Kzo9I | GATC | 1 cut(s) | 628 |
| LmnI | GCTCC | 2 cut(s) | 451, 619 |
| LpnPI | CCDG | 7 cut(s) | 194, 205, 385, 456, 607, 621, 630 |
| Lsp1109I | GCAGC | 1 cut(s) | 514 |
| LweI | GCATC | 3 cut(s) | 352, 406, 555 |
| MaeI | CTAG | 2 cut(s) | 81, 93 |
| MaeII | ACGT | 1 cut(s) | 68 |
| MalI | GATC | 1 cut(s) | 630 |
| MboI | GATC | 1 cut(s) | 628 |
| MboII | GAAGA | 4 cut(s) | 200, 229, 646, 649 |
| MluCI | AATT | 2 cut(s) | 100, 583 |
| MluI | ACGCGT | 1 cut(s) | 226 |
| MnlI | CCTC | 3 cut(s) | 342, 388, 501 |
| Mph1103I | ATGCAT | 2 cut(s) | 6, 421 |
| MslI | CAYNNNNRTG | 1 cut(s) | 336 |
| MvnI | CGCG | 1 cut(s) | 228 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 93 |
| NdeI | CATATG | 1 cut(s) | 310 |
| NdeII | GATC | 1 cut(s) | 628 |
| NlaIII | CATG | 5 cut(s) | 55, 189, 451, 561, 640 |
| NlaIV | GGNNCC | 1 cut(s) | 365 |
| NsiI | ATGCAT | 2 cut(s) | 6, 421 |
| NspI | RCATGY | 1 cut(s) | 640 |
| NspV | TTCGAA | 1 cut(s) | 222 |
| PaeR7I | CTCGAG | 1 cut(s) | 379 |
| PfeI | GAWTC | 1 cut(s) | 305 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 623 |
| PkrI | GCNGC | 1 cut(s) | 529 |
| PspN4I | GGNNCC | 1 cut(s) | 365 |
| PspXI | VCTCGAGB | 1 cut(s) | 379 |
| PstI | CTGCAG | 1 cut(s) | 532 |
| RsaI | GTAC | 1 cut(s) | 365 |
| RsaNI | GTAC | 1 cut(s) | 364 |
| RseI | CAYNNNNRTG | 1 cut(s) | 336 |
| SatI | GCNGC | 1 cut(s) | 528 |
| Sau3AI | GATC | 1 cut(s) | 628 |
| SetI | ASST | 8 cut(s) | 71, 82, 94, 160, 365, 411, 529, 616 |
| SfaNI | GCATC | 3 cut(s) | 352, 406, 555 |
| SfcI | CTRYAG | 2 cut(s) | 358, 528 |
| Sfr274I | CTCGAG | 1 cut(s) | 379 |
| SfuI | TTCGAA | 1 cut(s) | 222 |
| SlaI | CTCGAG | 1 cut(s) | 379 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 336 |
| SmlI | CTYRAG | 1 cut(s) | 379 |
| SmoI | CTYRAG | 1 cut(s) | 379 |
| Sse9I | AATT | 2 cut(s) | 100, 583 |
| SspI | AATATT | 2 cut(s) | 219, 285 |
| SspMI | CTAG | 2 cut(s) | 81, 93 |
| TaaI | ACNGT | 3 cut(s) | 118, 268, 390 |
| TaiI | ACGT | 1 cut(s) | 71 |
| TaqI | TCGA | 2 cut(s) | 222, 380 |
| TasI | AATT | 2 cut(s) | 100, 583 |
| TfiI | GAWTC | 1 cut(s) | 305 |
| TscAI | CASTG | 1 cut(s) | 121 |
| TseI | GCWGC | 1 cut(s) | 527 |
| TspDTI | ATGAA | 5 cut(s) | 297, 320, 511, 546, 596 |
| TspGWI | ACGGA | 1 cut(s) | 121 |
| TspRI | CASTG | 1 cut(s) | 121 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 623 |
| XapI | RAATTY | 1 cut(s) | 100 |
| XceI | RCATGY | 1 cut(s) | 640 |
| XhoI | CTCGAG | 1 cut(s) | 379 |
| XspI | CTAG | 2 cut(s) | 81, 93 |
| Zsp2I | ATGCAT | 2 cut(s) | 6, 421 |