Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005734.1

Orthogroup ID

OG0003159

Physical Location & Seq

Genomic Coordinates Reverse (-)

9326 .. 14523

Gene Structure 5198 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005734.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

atgccctgcatttttctgctgttttacagaattgccttggcgcctgtcgtgctgctcagtgctacgtgtgtttgctttacgcaacgacagcacggagaaaaaagtgcttcgttcaaatacttggtccgccattctactaaatccgactcctacgcatcttccagctccggcgccgacaaatctcccgattctaaggatccttggtgtttgaatttctatgcgtacaaggccacattcagacaaagcatatatagtccttttggtttgctgctactgaataatcaaccaagttcagatcagttttctaggggaaagctaatagatgcatcccgatttttacacaaagagaaggacatggagcgtggcttctcctggtcaggaaatcccattggaaagtatagaggcaaaaggatgaggatagactacttcatagctgcagagcaactcaaagataggattgtttcatgtgagatgcacgggcaagggatgaattacaagaagaagacgttcgcacagatgcaaaagtgtggacattcctcctcaggcctcgatcaggcagtggtttcaggtgatatagaaggagccattcaaaagaagacgtccgcacagatgcaaaagtgtgaacattcctcctcaggcctcgatcaggcagtggtttcaggcgctgcggttgccgaacgaatactttggacatcccggacagcgtcactatcaaggcgacaactcagctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003906 GO:0004518 GO:0004519 GO:0004520 GO:0004527 GO:0004529 GO:0004536 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006284 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008296 GO:0008309 GO:0008311 GO:0008408 GO:0009507 GO:0009536 GO:0009987 GO:0016787 GO:0016788 GO:0016796 GO:0016889 GO:0016894 GO:0016895 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:0090305 GO:0140097 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Exo_endo_phos

Protein Analysis

243

Amino Acids

27.13

Weight (kDa)

9.56

Isoelectric Point (pI)

41.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003159)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48425
fragaria_vesca	FvH4_5g07080 FvH4_5g07080 FvH4_5g07080
malus_domestica	MD14G1165700.v1.1
prunus_persica	Prupe.5G159400_v2.0.a1
pyrus_communis	pycom14g13820
rosa_chinensis	RchiOBHm_Chr3g0465631 RchiOBHm_Chr7g0191471
rosa_laevigata	RLG00000004446
rosa_multiflora	Rmu_sc0000550.1_g000024 Rmu_sc0002661.1_g000010 Rmu_sc0003226.1_g000026 Rmu_sc0005734.1_g000004 Rmu_sc0022975.1_g000001 Rmu_sc0031859.1_g000001
rosa_roxburghii	Rroxscaffold_157G00438410 Rroxscaffold_2G00098620 Rroxscaffold_3G00263770 Rroxscaffold_5G00347080 Rroxscaffold_5G00349220 Rroxscaffold_7G00194680
rosa_rugosa	Rorug05G0345200 Rorug06G0510500
rosa_samantha	Rh2AG501600 Rh2CG487600 Rh3BG139700 Rh3BG143200 Rh3DG144500 Rh5BG061000 Rh7AG118600 Rh7BG012100 Rh7BG120600 Rh7CG123400 Rh7DG121500
rosa_wichuraiana	Rw2G044070 Rw7G026230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	602
AccB1I	GGYRCC	2 cut(s)	40, 170
AciI	CCGC	3 cut(s)	127, 603, 668
AclWI	GGATC	2 cut(s)	191, 204
AcsI	RAATTY	1 cut(s)	211
AcyI	GRCGYC	3 cut(s)	41, 171, 599
AfaI	GTAC	1 cut(s)	224
AfiI	CCNNNNNNNGG	2 cut(s)	553, 646
AflIII	ACRYGT	1 cut(s)	65
AgsI	TTSAA	3 cut(s)	115, 211, 590
AjnI	CCWGG	1 cut(s)	371
AluBI	AGCT	4 cut(s)	165, 316, 434, 729
AluI	AGCT	4 cut(s)	165, 316, 434, 729
AlwI	GGATC	2 cut(s)	191, 204
AlwNI	CAGNNNCTG	1 cut(s)	665
AoxI	GGCC	3 cut(s)	228, 544, 637
ApeKI	GCWGC	4 cut(s)	52, 268, 434, 665
ApoI	RAATTY	1 cut(s)	211
ArsI	GACNNNNNNTTYG	2 cut(s)	108, 140
Asp700I	GAANNNNTTC	1 cut(s)	506
AspLEI	GCGC	3 cut(s)	43, 173, 665
AspS9I	GGNCC	1 cut(s)	124
AsuC2I	CCSGG	1 cut(s)	697
AsuHPI	GGTGA	1 cut(s)	581
AvaII	GGWCC	1 cut(s)	124
AxyI	CCTNAGG	2 cut(s)	541, 634
BamHI	GGATCC	1 cut(s)	196
BanI	GGYRCC	2 cut(s)	40, 170
BbsI	GAAGAC	2 cut(s)	509, 602
BbvI	GCAGC	4 cut(s)	39, 255, 421, 652
BciT130I	CCWGG	1 cut(s)	373
BcnI	CCSGG	1 cut(s)	697
BfaI	CTAG	1 cut(s)	306
BfmI	CTRYAG	1 cut(s)	435
BfoI	RGCGCY	3 cut(s)	44, 174, 666
BisI	GCNGC	4 cut(s)	53, 269, 435, 666
BlsI	GCNGC	4 cut(s)	54, 270, 436, 667
Bme1390I	CCNGG	2 cut(s)	373, 697
Bme18I	GGWCC	1 cut(s)	124
BmgT120I	GGNCC	1 cut(s)	124
BmiI	GGNNCC	4 cut(s)	42, 172, 198, 583
BmrFI	CCNGG	2 cut(s)	373, 697
BmsI	GCATC	6 cut(s)	164, 313, 335, 462, 507, 600
BpiI	GAAGAC	2 cut(s)	509, 602
BpuMI	CCSGG	1 cut(s)	697
BsaAI	YACGTR	1 cut(s)	66
BsaHI	GRCGYC	3 cut(s)	41, 171, 599
BsaJI	CCNNGG	2 cut(s)	36, 200
Bsc4I	CCNNNNNNNGG	2 cut(s)	553, 646
Bse21I	CCTNAGG	2 cut(s)	541, 634
BseBI	CCWGG	1 cut(s)	373
BseDI	CCNNGG	2 cut(s)	36, 200
BseGI	GGATG	4 cut(s)	326, 417, 492, 692
BseLI	CCNNNNNNNGG	2 cut(s)	553, 646
BseMII	CTCAG	3 cut(s)	70, 555, 648
BseRI	GAGGAG	2 cut(s)	529, 622
BseXI	GCAGC	4 cut(s)	39, 255, 421, 652
BshFI	GGCC	3 cut(s)	230, 546, 639
BshNI	GGYRCC	2 cut(s)	40, 170
BsiSI	CCGG	2 cut(s)	168, 697
BslI	CCNNNNNNNGG	2 cut(s)	553, 646
BsnI	GGCC	3 cut(s)	230, 546, 639
Bsp143I	GATC	4 cut(s)	196, 295, 550, 643
BspACI	CCGC	3 cut(s)	127, 603, 668
BspANI	GGCC	3 cut(s)	230, 546, 639
BspCNI	CTCAG	3 cut(s)	69, 554, 647
BspLI	GGNNCC	4 cut(s)	42, 172, 198, 583
BspMAI	CTGCAG	1 cut(s)	439
BspPI	GGATC	2 cut(s)	191, 204
BspT107I	GGYRCC	2 cut(s)	40, 170
BssECI	CCNNGG	2 cut(s)	36, 200
BssMI	GATC	4 cut(s)	196, 295, 550, 643
BssNI	GRCGYC	3 cut(s)	41, 171, 599
BssT1I	CCWWGG	2 cut(s)	36, 200
Bst2UI	CCWGG	1 cut(s)	373
BstACI	GRCGYC	3 cut(s)	41, 171, 599
BstBAI	YACGTR	1 cut(s)	66
BstDEI	CTNAG	5 cut(s)	56, 192, 541, 634, 725
BstENI	CCTNNNNNAGG	2 cut(s)	551, 644
BstF5I	GGATG	4 cut(s)	326, 417, 492, 692
BstH2I	RGCGCY	3 cut(s)	44, 174, 666
BstHHI	GCGC	3 cut(s)	43, 173, 665
BstKTI	GATC	4 cut(s)	199, 298, 553, 646
BstMBI	GATC	4 cut(s)	196, 295, 550, 643
BstMWI	GCNNNNNNNGC	4 cut(s)	49, 88, 227, 671
BstNI	CCWGG	1 cut(s)	373
BstSCI	CCNGG	2 cut(s)	371, 695
BstSFI	CTRYAG	1 cut(s)	435
BstV1I	GCAGC	4 cut(s)	39, 255, 421, 652
BstV2I	GAAGAC	2 cut(s)	509, 602
BstX2I	RGATCY	1 cut(s)	196
BstYI	RGATCY	1 cut(s)	196
Bsu36I	CCTNAGG	2 cut(s)	541, 634
BsuRI	GGCC	3 cut(s)	230, 546, 639
BtsCI	GGATG	4 cut(s)	326, 417, 492, 692
BtsI	GCAGTG	2 cut(s)	564, 657
BtsIMutI	CAGTG	3 cut(s)	64, 564, 657
CaiI	CAGNNNCTG	1 cut(s)	665
CfoI	GCGC	3 cut(s)	43, 173, 665
Cfr13I	GGNCC	1 cut(s)	124
CseI	GACGC	1 cut(s)	693
Csp6I	GTAC	1 cut(s)	223
CviAII	CATG	2 cut(s)	355, 465
CviJI	RGCY	9 cut(s)	165, 230, 316, 366, 434, 546, 584, 639, 729
CviKI_1	RGCY	9 cut(s)	165, 230, 316, 366, 434, 546, 584, 639, 729
CviQI	GTAC	1 cut(s)	223
DdeI	CTNAG	5 cut(s)	56, 192, 541, 634, 725
DinI	GGCGCC	2 cut(s)	42, 172
DpnI	GATC	4 cut(s)	198, 297, 552, 645
DpnII	GATC	4 cut(s)	196, 295, 550, 643
EciI	GGCGGA	1 cut(s)	116
Eco130I	CCWWGG	2 cut(s)	36, 200
Eco147I	AGGCCT	2 cut(s)	546, 639
Eco47I	GGWCC	1 cut(s)	124
Eco81I	CCTNAGG	2 cut(s)	541, 634
EcoNI	CCTNNNNNAGG	2 cut(s)	551, 644
EcoRII	CCWGG	1 cut(s)	371
EcoT14I	CCWWGG	2 cut(s)	36, 200
EcoT22I	ATGCAT	1 cut(s)	328
EgeI	GGCGCC	2 cut(s)	42, 172
EheI	GGCGCC	2 cut(s)	42, 172
ErhI	CCWWGG	2 cut(s)	36, 200
FaeI	CATG	2 cut(s)	358, 468
FaiI	YATR	9 cut(s)	219, 248, 250, 252, 356, 399, 431, 466, 575
FatI	CATG	2 cut(s)	354, 464
Fnu4HI	GCNGC	4 cut(s)	53, 269, 435, 666
FokI	GGATG	4 cut(s)	313, 424, 499, 679
Fsp4HI	GCNGC	4 cut(s)	53, 269, 435, 666
FspBI	CTAG	1 cut(s)	306
GlaI	GCGC	3 cut(s)	42, 172, 664
GluI	GCNGC	4 cut(s)	53, 269, 435, 666
HaeII	RGCGCY	3 cut(s)	44, 174, 666
HaeIII	GGCC	3 cut(s)	230, 546, 639
HapII	CCGG	2 cut(s)	168, 697
HgaI	GACGC	1 cut(s)	693
HhaI	GCGC	3 cut(s)	43, 173, 665
Hin1I	GRCGYC	3 cut(s)	41, 171, 599
Hin1II	CATG	2 cut(s)	358, 468
Hin6I	GCGC	3 cut(s)	41, 171, 663
HinP1I	GCGC	3 cut(s)	41, 171, 663
HinfI	GANTC	2 cut(s)	146, 188
HpaII	CCGG	2 cut(s)	168, 697
HphI	GGTGA	1 cut(s)	581
Hpy166II	GTNNAC	2 cut(s)	530, 623
Hpy188I	TCNGA	3 cut(s)	145, 239, 295
Hpy188III	TCNNGA	3 cut(s)	185, 330, 378
Hpy8I	GTNNAC	2 cut(s)	530, 623
HpyAV	CCTTC	2 cut(s)	343, 572
HpyCH4IV	ACGT	3 cut(s)	65, 506, 599
HpyCH4V	TGCA	6 cut(s)	9, 326, 437, 475, 520, 613
HpyF10VI	GCNNNNNNNGC	4 cut(s)	49, 88, 227, 671
HpyF3I	CTNAG	5 cut(s)	56, 192, 541, 634, 725
HpySE526I	ACGT	3 cut(s)	65, 506, 599
Hsp92I	GRCGYC	3 cut(s)	41, 171, 599
Hsp92II	CATG	2 cut(s)	358, 468
HspAI	GCGC	3 cut(s)	41, 171, 663
KasI	GGCGCC	2 cut(s)	40, 170
Kzo9I	GATC	4 cut(s)	196, 295, 550, 643
LmnI	GCTCC	3 cut(s)	170, 358, 581
Lsp1109I	GCAGC	4 cut(s)	39, 255, 421, 652
LweI	GCATC	6 cut(s)	164, 313, 335, 462, 507, 600
MaeI	CTAG	1 cut(s)	306
MaeII	ACGT	3 cut(s)	65, 506, 599
MaeIII	GTNAC	1 cut(s)	705
MalI	GATC	4 cut(s)	198, 297, 552, 645
MboI	GATC	4 cut(s)	196, 295, 550, 643
MboII	GAAGA	4 cut(s)	150, 511, 514, 607
MflI	RGATCY	1 cut(s)	196
MluCI	AATT	3 cut(s)	30, 211, 490
Mly113I	GGCGCC	2 cut(s)	41, 171
MlyI	GAGTC	1 cut(s)	140
MmeI	TCCRAC	1 cut(s)	168
MnlI	CCTC	8 cut(s)	395, 408, 547, 550, 557, 640, 643, 650
Mph1103I	ATGCAT	1 cut(s)	328
MroXI	GAANNNNTTC	1 cut(s)	506
MspA1I	CMGCKG	1 cut(s)	729
MspI	CCGG	2 cut(s)	168, 697
MspR9I	CCNGG	2 cut(s)	373, 697
MvaI	CCWGG	1 cut(s)	373
MwoI	GCNNNNNNNGC	4 cut(s)	49, 88, 227, 671
NarI	GGCGCC	2 cut(s)	41, 171
NciI	CCSGG	1 cut(s)	697
NdeII	GATC	4 cut(s)	196, 295, 550, 643
NlaIII	CATG	2 cut(s)	358, 468
NlaIV	GGNNCC	4 cut(s)	42, 172, 198, 583
NmuCI	GTSAC	1 cut(s)	705
NsiI	ATGCAT	1 cut(s)	328
PceI	AGGCCT	2 cut(s)	546, 639
PdmI	GAANNNNTTC	1 cut(s)	506
PfeI	GAWTC	1 cut(s)	188
PflFI	GACNNNGTC	1 cut(s)	703
PfoI	TCCNGGA	1 cut(s)	695
PkrI	GCNGC	4 cut(s)	54, 270, 436, 667
PleI	GAGTC	1 cut(s)	140
PluTI	GGCGCC	2 cut(s)	44, 174
PpsI	GAGTC	1 cut(s)	140
Ppu21I	YACGTR	1 cut(s)	66
Psp6I	CCWGG	1 cut(s)	371
PspGI	CCWGG	1 cut(s)	371
PspN4I	GGNNCC	4 cut(s)	42, 172, 198, 583
PspPI	GGNCC	1 cut(s)	124
PstI	CTGCAG	1 cut(s)	439
PstNI	CAGNNNCTG	1 cut(s)	665
PsuI	RGATCY	1 cut(s)	196
PsyI	GACNNNGTC	1 cut(s)	703
PvuII	CAGCTG	1 cut(s)	729
RsaI	GTAC	1 cut(s)	224
RsaNI	GTAC	1 cut(s)	223
SatI	GCNGC	4 cut(s)	53, 269, 435, 666
Sau3AI	GATC	4 cut(s)	196, 295, 550, 643
Sau96I	GGNCC	1 cut(s)	124
SchI	GAGTC	1 cut(s)	140
ScrFI	CCNGG	2 cut(s)	373, 697
SetI	ASST	8 cut(s)	68, 167, 318, 436, 509, 571, 602, 731
SfaNI	GCATC	6 cut(s)	164, 313, 335, 462, 507, 600
SfcI	CTRYAG	1 cut(s)	435
SfoI	GGCGCC	2 cut(s)	42, 172
SinI	GGWCC	1 cut(s)	124
Sse9I	AATT	3 cut(s)	30, 211, 490
SseBI	AGGCCT	2 cut(s)	546, 639
SsiI	CCGC	3 cut(s)	127, 603, 668
SspDI	GGCGCC	2 cut(s)	40, 170
SspMI	CTAG	1 cut(s)	306
StuI	AGGCCT	2 cut(s)	546, 639
StyD4I	CCNGG	2 cut(s)	371, 695
StyI	CCWWGG	2 cut(s)	36, 200
TaiI	ACGT	3 cut(s)	68, 509, 602
TaqI	TCGA	2 cut(s)	549, 642
TasI	AATT	3 cut(s)	30, 211, 490
TfiI	GAWTC	1 cut(s)	188
TscAI	CASTG	3 cut(s)	64, 564, 657
TseFI	GTSAC	1 cut(s)	705
TseI	GCWGC	4 cut(s)	52, 268, 434, 665
Tsp45I	GTSAC	1 cut(s)	705
TspDTI	ATGAA	3 cut(s)	418, 453, 503
TspGWI	ACGGA	1 cut(s)	108
TspRI	CASTG	3 cut(s)	64, 564, 657
Tth111I	GACNNNGTC	1 cut(s)	703
VpaK11BI	GGWCC	1 cut(s)	124
XagI	CCTNNNNNAGG	2 cut(s)	551, 644
XapI	RAATTY	1 cut(s)	211
XmnI	GAANNNNTTC	1 cut(s)	506
XspI	CTAG	1 cut(s)	306
ZraI	GACGTC	1 cut(s)	600
Zsp2I	ATGCAT	1 cut(s)	328

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.