AT3G48830

Belongs to the tRNA nucleotidyltransferase poly(A) polymerase family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Forward (+)
18103141 .. 18106460
3320 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G48830.1

Sequence Viewer

Length: 1560 bp
ATGGCGGTTTTAAGTGTGGGTTTCTTCGCTTGCAGATCCCATTTTCCTGTTCTTCCCCTGTTTTACTGTTTCTCGAAGGTTCAGCTCAACACTGTTGCTGCTGCAATGGAGACTGTGGATGACAAAGACAGTGATCATCATCATGACAAGGGTTCTAATAAGACGACACCAGAGTGGAAGAAATTGAATTCAAAAGACCTTGGGATAACCACTTCTATGATTTCAAAGCCTACACGAATAGTGCTAAATGGCCTTAAGAGTAAAGGATATGATGTTTACCTTGTGGGAGGCTGTGTACGCGATCTTATTTTGAAGCGGACGCCAAAAGACTTCGATATACTCACTTCTGCGGAACTTAGAGAGGTTGTTCGGAGTTTCTCAAGATGTGAAATAATTGGAAAAAAATTTCCTATATGTCATGTGCACATTGGGAATGATATGATAGAGGTTTCGAGTTTTAGCACCTCTGCTCAAAATTCTCTAAGAAACACAAGAACGGGTTCTGGAAAATCTAATGGTTCCTATGACGAGGACAGTATCCGTTTCAATAACTGCTTGCAGCGTGATTTCACAATTAATGGGTTGATGTTTGATCCATATGCCAAAGTTATATATGACTATCTTGGGGGAATAGAAGACATTAAAAAAGCTAAGGTACGGACAGTGTTTCATGCTGGCACATCATTTCAAGAGGACAGTGCCAGGATTCTTCGTGGAACAAGAATTGCTGCGCGTTTAGGTTTTACAATTTCCAAGGAAACAGCTCATTTCTTAAAGAACCTTTCCTTCCTAGTACAAAGACTCCACAGGGGAAGAATCTTGTTGGAAATGAATTACATGTTAGCGTATGGATCAGCAGAAGCTTCTTTACGATTGTTGTGGAAATTTGGGATACTAGAAATTCTTTTACCAATTCAGGCAGCATATCTCGTTCGCACTGGTTTCAAGAGACGCGACAAAAGGAGTAACTTGCTTCTGTCTCTCTTCGGAAATTTGGATAAATTGTTGGCTCCTGATAAACCTTGCCACAGCAGCTTATGGCTAACAATCTTGGCTCTTCACAAAGCACTTGCTGATCAACCTCGATATCCTTCAGTGGTAGCCGCGTTTAGCCTTGCTGTCCACAATGGTGGAGATGTTTTAGAAGCTGTAAAAAATACCAGGAAAGTCACAAAGCCACATAATAGAAGCTTCTTTGAGCTACTGGAGCCAGAGGAAATGGACTCCCAAACCTTGTTGGATGAAGTCATGGATTTTGATTCATCTATCAAAGAAGCCTTGGGACAGATGACTGATGGGAGGTTTATTTCCAAGGCTATGGCAGCGTACCCTCAGGCCCCATATTCCGATATGGTTTTCATACCGTTGCAATTGTACCTAGATGCAAGACGAATATTCGAGTGTGTGAAAGAAAATGGGCAGAAGGGATTTGTGCCTAAGCAAGACAGTAAAATTGATTATACCTCATTATCTTCAGGCAACCTTCCAGAAGTTAGACACGTATTTGCTAGGGTTGTTTTCGACACAGTGTTTCCGTTAAACCCACCTCAAGAGTTGTAG

Protein Analysis

519

Amino Acids

58.46

Weight (kDa)

9.09

Isoelectric Point (pI)

40.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PolyA_pol PF01743 92 - 220 1.8e-24 Poly A polymerase head domain
PolyA_pol_RNAbd PF12627 247 - 309 1.2e-13 Probable RNA and SrmB- binding site of polymerase A
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 4 cut(s) 300, 733, 954, 1106
AciI CCGC 4 cut(s) 5, 316, 350, 1104
AclWI GGATC 3 cut(s) 30, 587, 859
AcsI RAATTY 6 cut(s) 187, 404, 475, 884, 900, 991
AcuI CTGAAG 2 cut(s) 1077, 1458
AcyI GRCGYC 1 cut(s) 320
AfaI GTAC 5 cut(s) 297, 657, 795, 1328, 1376
AflII CTTAAG 1 cut(s) 254
AflIII ACRYGT 2 cut(s) 837, 1498
AgsI TTSAA 7 cut(s) 187, 192, 225, 313, 547, 689, 946
AjnI CCWGG 2 cut(s) 701, 1160
AleI CACNNNNGTG 2 cut(s) 172, 1128
AluBI AGCT 8 cut(s) 85, 650, 764, 863, 1035, 1148, 1191, 1201
AluI AGCT 8 cut(s) 85, 650, 764, 863, 1035, 1148, 1191, 1201
Alw21I GWGCWC 1 cut(s) 426
Alw26I GTCTC 3 cut(s) 104, 943, 984
Alw44I GTGCAC 1 cut(s) 422
AlwI GGATC 3 cut(s) 30, 587, 859
AoxI GGCC 2 cut(s) 250, 1335
ApaLI GTGCAC 1 cut(s) 422
ApeKI GCWGC 7 cut(s) 98, 101, 559, 728, 920, 1032, 1322
ApoI RAATTY 6 cut(s) 187, 404, 475, 884, 900, 991
AseI ATTAAT 1 cut(s) 576
Asp700I GAANNNNTTC 1 cut(s) 499
AspLEI GCGC 1 cut(s) 733
AspS9I GGNCC 1 cut(s) 1336
AxyI CCTNAGG 1 cut(s) 1332
BaeGI GKGCMC 1 cut(s) 426
BarI GAAGNNNNNNTAC 2 cut(s) 852, 884
BbsI GAAGAC 1 cut(s) 642
Bbv12I GWGCWC 1 cut(s) 426
BbvI GCAGC 7 cut(s) 85, 88, 571, 715, 932, 1044, 1334
BccI CCATC 1 cut(s) 1289
BciT130I CCWGG 2 cut(s) 703, 1162
BciVI GTATCC 2 cut(s) 548, 885
BclI TGATCA 2 cut(s) 133, 1075
BcoDI GTCTC 3 cut(s) 104, 943, 984
BfaI CTAG 4 cut(s) 791, 896, 1379, 1509
BfrI CTTAAG 1 cut(s) 254
BfuI GTATCC 2 cut(s) 548, 885
BisI GCNGC 8 cut(s) 99, 102, 560, 729, 921, 1033, 1104, 1323
BlsI GCNGC 8 cut(s) 100, 103, 561, 730, 922, 1034, 1105, 1324
Bme1390I CCNGG 2 cut(s) 703, 1162
BmgT120I GGNCC 1 cut(s) 1336
BmiI GGNNCC 4 cut(s) 520, 1011, 1209, 1338
BmrFI CCNGG 2 cut(s) 703, 1162
BmsI GCATC 1 cut(s) 1372
BpiI GAAGAC 1 cut(s) 642
BpmI CTGGAG 1 cut(s) 1226
Bpu10I CCTNAGC 2 cut(s) 651, 1437
BpuEI CTTGAG 2 cut(s) 364, 1533
BsaAI YACGTR 1 cut(s) 1501
BsaBI GATNNNNATC 1 cut(s) 138
BsaHI GRCGYC 1 cut(s) 320
BsaJI CCNNGG 4 cut(s) 199, 753, 1278, 1311
BsaXI ACNNNNNCTCC 4 cut(s) 279, 309, 786, 816
Bse1I ACTGG 2 cut(s) 943, 1209
Bse21I CCTNAGG 1 cut(s) 1332
Bse3DI GCAATG 1 cut(s) 111
Bse8I GATNNNNATC 1 cut(s) 138
BseBI CCWGG 2 cut(s) 703, 1162
BseDI CCNNGG 4 cut(s) 199, 753, 1278, 1311
BseGI GGATG 2 cut(s) 124, 1246
BseJI GATNNNNATC 1 cut(s) 138
BseMI GCAATG 1 cut(s) 111
BseMII CTCAG 1 cut(s) 1346
BseNI ACTGG 2 cut(s) 943, 1209
BseSI GKGCMC 1 cut(s) 426
BseXI GCAGC 7 cut(s) 85, 88, 571, 715, 932, 1044, 1334
Bsh1236I CGCG 4 cut(s) 300, 733, 954, 1106
BshFI GGCC 2 cut(s) 252, 1337
BsiHKAI GWGCWC 1 cut(s) 426
BslFI GGGAC 1 cut(s) 1296
BsmAI GTCTC 3 cut(s) 104, 943, 984
BsmBI CGTCTC 1 cut(s) 943
BsmFI GGGAC 1 cut(s) 1296
BsnI GGCC 2 cut(s) 252, 1337
Bsp1286I GDGCHC 1 cut(s) 426
Bsp143I GATC 6 cut(s) 35, 133, 301, 592, 851, 1075
BspACI CCGC 4 cut(s) 5, 316, 350, 1104
BspANI GGCC 2 cut(s) 252, 1337
BspCNI CTCAG 1 cut(s) 1345
BspFNI CGCG 4 cut(s) 300, 733, 954, 1106
BspHI TCATGA 1 cut(s) 142
BspLI GGNNCC 4 cut(s) 520, 1011, 1209, 1338
BspPI GGATC 3 cut(s) 30, 587, 859
BspQI GCTCTTC 1 cut(s) 1062
BspTI CTTAAG 1 cut(s) 254
BsrDI GCAATG 1 cut(s) 111
BsrI ACTGG 2 cut(s) 943, 1209
BssECI CCNNGG 4 cut(s) 199, 753, 1278, 1311
BssMI GATC 6 cut(s) 35, 133, 301, 592, 851, 1075
BssNI GRCGYC 1 cut(s) 320
BssT1I CCWWGG 4 cut(s) 199, 753, 1278, 1311
Bst2UI CCWGG 2 cut(s) 703, 1162
Bst6I CTCTTC 2 cut(s) 989, 1062
BstACI GRCGYC 1 cut(s) 320
BstAFI CTTAAG 1 cut(s) 254
BstBAI YACGTR 1 cut(s) 1501
BstC8I GCNNGC 3 cut(s) 31, 557, 676
BstDEI CTNAG 5 cut(s) 356, 482, 651, 1332, 1437
BstF5I GGATG 2 cut(s) 124, 1246
BstFNI CGCG 4 cut(s) 300, 733, 954, 1106
BstHHI GCGC 1 cut(s) 733
BstKTI GATC 6 cut(s) 38, 136, 304, 595, 854, 1078
BstMAI GTCTC 3 cut(s) 104, 943, 984
BstMBI GATC 6 cut(s) 35, 133, 301, 592, 851, 1075
BstMWI GCNNNNNNNGC 4 cut(s) 297, 1032, 1207, 1322
BstNI CCWGG 2 cut(s) 703, 1162
BstNSI RCATGY 1 cut(s) 841
BstSCI CCNGG 2 cut(s) 701, 1160
BstSLI GKGCMC 1 cut(s) 426
BstUI CGCG 4 cut(s) 300, 733, 954, 1106
BstV1I GCAGC 7 cut(s) 85, 88, 571, 715, 932, 1044, 1334
BstV2I GAAGAC 1 cut(s) 642
BstX2I RGATCY 1 cut(s) 35
BstXI CCANNNNNNTGG 2 cut(s) 1130, 1318
BstYI RGATCY 1 cut(s) 35
Bsu36I CCTNAGG 1 cut(s) 1332
BsuI GTATCC 2 cut(s) 548, 885
BsuRI GGCC 2 cut(s) 252, 1337
BtsCI GGATG 2 cut(s) 124, 1246
BtsIMutI CAGTG 7 cut(s) 90, 136, 669, 703, 936, 1101, 1533
Cac8I GCNNGC 3 cut(s) 31, 557, 676
CciI TCATGA 1 cut(s) 142
CfoI GCGC 1 cut(s) 733
Cfr13I GGNCC 1 cut(s) 1336
CseI GACGC 2 cut(s) 328, 960
Csp6I GTAC 5 cut(s) 296, 656, 794, 1327, 1375
CviAII CATG 5 cut(s) 143, 419, 671, 838, 1249
CviQI GTAC 5 cut(s) 296, 656, 794, 1327, 1375
DdeI CTNAG 5 cut(s) 356, 482, 651, 1332, 1437
DpnI GATC 6 cut(s) 37, 135, 303, 594, 853, 1077
DpnII GATC 6 cut(s) 35, 133, 301, 592, 851, 1075
Eam1104I CTCTTC 2 cut(s) 989, 1062
EarI CTCTTC 2 cut(s) 989, 1062
Eco130I CCWWGG 4 cut(s) 199, 753, 1278, 1311
Eco32I GATATC 1 cut(s) 1088
Eco57I CTGAAG 2 cut(s) 1077, 1458
Eco81I CCTNAGG 1 cut(s) 1332
EcoO109I RGGNCCY 1 cut(s) 1336
EcoRI GAATTC 1 cut(s) 187
EcoRII CCWGG 2 cut(s) 701, 1160
EcoRV GATATC 1 cut(s) 1088
EcoT14I CCWWGG 4 cut(s) 199, 753, 1278, 1311
ErhI CCWWGG 4 cut(s) 199, 753, 1278, 1311
Esp3I CGTCTC 1 cut(s) 943
FaeI CATG 5 cut(s) 146, 422, 674, 841, 1252
FaqI GGGAC 1 cut(s) 1296
FatI CATG 5 cut(s) 142, 418, 670, 837, 1248
FauNDI CATATG 1 cut(s) 598
FbaI TGATCA 2 cut(s) 133, 1075
Fnu4HI GCNGC 8 cut(s) 99, 102, 560, 729, 921, 1033, 1104, 1323
FokI GGATG 2 cut(s) 131, 1253
Fsp4HI GCNGC 8 cut(s) 99, 102, 560, 729, 921, 1033, 1104, 1323
FspBI CTAG 4 cut(s) 791, 896, 1379, 1509
GlaI GCGC 1 cut(s) 732
GluI GCNGC 8 cut(s) 99, 102, 560, 729, 921, 1033, 1104, 1323
GsuI CTGGAG 1 cut(s) 1226
HaeIII GGCC 2 cut(s) 252, 1337
HgaI GACGC 2 cut(s) 328, 960
HhaI GCGC 1 cut(s) 733
Hin1I GRCGYC 1 cut(s) 320
Hin1II CATG 5 cut(s) 146, 422, 674, 841, 1252
Hin6I GCGC 1 cut(s) 731
HinP1I GCGC 1 cut(s) 731
HindIII AAGCTT 2 cut(s) 861, 1189
HinfI GANTC 5 cut(s) 706, 801, 816, 1223, 1259
Hpy166II GTNNAC 4 cut(s) 277, 296, 424, 1123
Hpy188I TCNGA 3 cut(s) 372, 989, 1348
Hpy188III TCNNGA 9 cut(s) 73, 143, 381, 504, 689, 946, 1013, 1487, 1550
Hpy8I GTNNAC 4 cut(s) 277, 296, 424, 1123
HpyAV CCTTC 5 cut(s) 70, 796, 1101, 1417, 1493
HpyCH4IV ACGT 1 cut(s) 1500
HpyCH4V TGCA 6 cut(s) 33, 104, 424, 559, 1369, 1385
HpyF10VI GCNNNNNNNGC 4 cut(s) 297, 1032, 1207, 1322
HpyF3I CTNAG 5 cut(s) 356, 482, 651, 1332, 1437
HpySE526I ACGT 1 cut(s) 1500
Hsp92I GRCGYC 1 cut(s) 320
Hsp92II CATG 5 cut(s) 146, 422, 674, 841, 1252
HspAI GCGC 1 cut(s) 731
Ksp22I TGATCA 2 cut(s) 133, 1075
Kzo9I GATC 6 cut(s) 35, 133, 301, 592, 851, 1075
LguI GCTCTTC 1 cut(s) 1062
LmnI GCTCC 2 cut(s) 1015, 1207
Lsp1109I GCAGC 7 cut(s) 85, 88, 571, 715, 932, 1044, 1334
LweI GCATC 1 cut(s) 1372
MaeI CTAG 4 cut(s) 791, 896, 1379, 1509
MaeII ACGT 1 cut(s) 1500
MaeIII GTNAC 2 cut(s) 965, 1168
MalI GATC 6 cut(s) 37, 135, 303, 594, 853, 1077
MboI GATC 6 cut(s) 35, 133, 301, 592, 851, 1075
MboII GAAGA 9 cut(s) 16, 44, 190, 647, 701, 825, 976, 1049, 1464
MfeI CAATTG 1 cut(s) 1370
MflI RGATCY 1 cut(s) 35
MhlI GDGCHC 1 cut(s) 426
MlyI GAGTC 2 cut(s) 795, 1217
MmeI TCCRAC 2 cut(s) 804, 1218
MroXI GAANNNNTTC 1 cut(s) 499
MseI TTAA 6 cut(s) 11, 255, 576, 642, 773, 1538
MslI CAYNNNNRTG 4 cut(s) 141, 172, 215, 1128
MspCI CTTAAG 1 cut(s) 254
MspR9I CCNGG 2 cut(s) 703, 1162
MunI CAATTG 1 cut(s) 1370
MvaI CCWGG 2 cut(s) 703, 1162
MvnI CGCG 4 cut(s) 300, 733, 954, 1106
MwoI GCNNNNNNNGC 4 cut(s) 297, 1032, 1207, 1322
NdeI CATATG 1 cut(s) 598
NdeII GATC 6 cut(s) 35, 133, 301, 592, 851, 1075
NlaIII CATG 5 cut(s) 146, 422, 674, 841, 1252
NlaIV GGNNCC 4 cut(s) 520, 1011, 1209, 1338
NmuCI GTSAC 1 cut(s) 1168
NspI RCATGY 1 cut(s) 841
OliI CACNNNNGTG 2 cut(s) 172, 1128
PagI TCATGA 1 cut(s) 142
PciI ACATGT 1 cut(s) 837
PciSI GCTCTTC 1 cut(s) 1062
PdmI GAANNNNTTC 1 cut(s) 499
PfeI GAWTC 3 cut(s) 706, 816, 1259
PkrI GCNGC 8 cut(s) 100, 103, 561, 730, 922, 1034, 1105, 1324
PleI GAGTC 2 cut(s) 795, 1217
PpsI GAGTC 2 cut(s) 795, 1217
Ppu21I YACGTR 1 cut(s) 1501
PscI ACATGT 1 cut(s) 837
PshBI ATTAAT 1 cut(s) 576
Psp6I CCWGG 2 cut(s) 701, 1160
PspGI CCWGG 2 cut(s) 701, 1160
PspN4I GGNNCC 4 cut(s) 520, 1011, 1209, 1338
PspPI GGNCC 1 cut(s) 1336
PsuI RGATCY 1 cut(s) 35
RsaI GTAC 5 cut(s) 297, 657, 795, 1328, 1376
RsaNI GTAC 5 cut(s) 296, 656, 794, 1327, 1375
RseI CAYNNNNRTG 4 cut(s) 141, 172, 215, 1128
SapI GCTCTTC 1 cut(s) 1062
SaqAI TTAA 6 cut(s) 11, 255, 576, 642, 773, 1538
SatI GCNGC 8 cut(s) 99, 102, 560, 729, 921, 1033, 1104, 1323
Sau3AI GATC 6 cut(s) 35, 133, 301, 592, 851, 1075
Sau96I GGNCC 1 cut(s) 1336
SchI GAGTC 2 cut(s) 795, 1217
ScrFI CCNGG 2 cut(s) 703, 1162
SduI GDGCHC 1 cut(s) 426
SfaNI GCATC 1 cut(s) 1372
SmiMI CAYNNNNRTG 4 cut(s) 141, 172, 215, 1128
SmlI CTYRAG 3 cut(s) 254, 379, 1548
SmoI CTYRAG 3 cut(s) 254, 379, 1548
SsiI CCGC 4 cut(s) 5, 316, 350, 1104
SspI AATATT 1 cut(s) 1395
SspMI CTAG 4 cut(s) 791, 896, 1379, 1509
StyD4I CCNGG 2 cut(s) 701, 1160
StyI CCWWGG 4 cut(s) 199, 753, 1278, 1311
TaiI ACGT 1 cut(s) 1503
TaqI TCGA 6 cut(s) 74, 333, 452, 1084, 1398, 1521
TatI WGTACW 1 cut(s) 793
TauI GCSGC 1 cut(s) 1106
TfiI GAWTC 3 cut(s) 706, 816, 1259
Tru1I TTAA 6 cut(s) 11, 255, 576, 642, 773, 1538
Tru9I TTAA 6 cut(s) 11, 255, 576, 642, 773, 1538
TscAI CASTG 7 cut(s) 97, 136, 669, 703, 943, 1101, 1533
TseFI GTSAC 1 cut(s) 1168
TseI GCWGC 7 cut(s) 98, 101, 559, 728, 920, 1032, 1322
Tsp45I GTSAC 1 cut(s) 1168
TspDTI ATGAA 5 cut(s) 659, 845, 1251, 1257, 1348
TspGWI ACGGA 3 cut(s) 530, 673, 1524
TspRI CASTG 7 cut(s) 97, 136, 669, 703, 943, 1101, 1533
Vha464I CTTAAG 1 cut(s) 254
VneI GTGCAC 1 cut(s) 422
VspI ATTAAT 1 cut(s) 576
XapI RAATTY 6 cut(s) 187, 404, 475, 884, 900, 991
XceI RCATGY 1 cut(s) 841
XmnI GAANNNNTTC 1 cut(s) 499
XspI CTAG 4 cut(s) 791, 896, 1379, 1509
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.