Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0001230

Physical Location & Seq

Genomic Coordinates Reverse (-)

24225659 .. 24226475

Gene Structure 817 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1149500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGGTAATTTCGAGCTTCGGAATCGCTTGCCGGCCCCATTTCTGCCTCCGTACTCCTCCGTTTCACTGCATCGGCAAGGTGCAATTGAACTTAGTCGCCGCCATGGAAGCTCTTGATGAACCGGGGTGCCTGTTTAAGGACAACAAAAGCAGTAATTCTGCCAATGGAAGAAAAAATGTTAAGGCGCCGGTGTGGAAGAAGCTGAATTCCAAAGAACTTGGCATTACTACTTCAATGATCGACAAGCCTACCCGAAAAGTTCTTAATGGGCTAAAGCGAAAGGGATATGAGGTATACCTTGTAGGAGGTTGTGTAAGGGATCTTATATTGAACCGTACGCCAAAGGACTTCGACATAATAACTAAAGGATATGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004652 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006276 GO:0006378 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016740 GO:0016772 GO:0016779 GO:0031123 GO:0031124 GO:0034641 GO:0043170 GO:0043412 GO:0043631 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0070566 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PolyA_pol PolyA_pol_RNAbd

Protein Analysis

126

Amino Acids

13.9

Weight (kDa)

9.71

Isoelectric Point (pI)

21.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PolyA_pol	PF01743	98 - 122	1.1e-07	Poly A polymerase head domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001230)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28090 AT1G28090 AT1G28090 AT1G28090 AT1G28090 AT3G48830 AT5G23690
fragaria_vesca	FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09270
malus_domestica	MD06G1133100.v1.1 MD14G1149300.v1.1 MD14G1149500.v1.1
prunus_persica	Prupe.5G144000_v2.0.a1 Prupe.5G144300_v2.0.a1
pyrus_communis	pycom06g12450 pycom14g12410
rosa_chinensis	RchiOBHm_Chr3g0469071 RchiOBHm_Chr7g0189011
rosa_laevigata	RLG00000004641 RLG00000024375 RLG00000024379 RLG00000024383 RLG00000024385
rosa_multiflora	Rmu_sc0000302.1_g000052 Rmu_sc0000326.1_g000001 Rmu_sc0007139.1_g000009 Rmu_sc0016080.1_g000004
rosa_roxburghii	Rroxscaffold_3G00265860
rosa_rugosa	Rorug03G0099300 Rorug06G0495400 Rorug06G0495500
rosa_samantha	Rh3AG148200 Rh3AG148500 Rh3BG171000 Rh3BG171100 Rh3BG171500 Rh7AG100100 Rh7BG102400 Rh7CG104000 Rh7DG102100
rosa_wichuraiana	Rw0G010940 Rw0G014560 Rw0G014590 Rw7G008650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	126, 184
AccI	GTMKAC	1 cut(s)	294
AciI	CCGC	1 cut(s)	99
AclWI	GGATC	1 cut(s)	327
AcsI	RAATTY	1 cut(s)	205
AcyI	GRCGYC	1 cut(s)	185
AfaI	GTAC	2 cut(s)	52, 337
AfiI	CCNNNNNNNGG	1 cut(s)	136
AgsI	TTSAA	3 cut(s)	88, 234, 331
AluBI	AGCT	3 cut(s)	15, 110, 202
AluI	AGCT	3 cut(s)	15, 110, 202
AlwI	GGATC	1 cut(s)	327
AoxI	GGCC	1 cut(s)	32
ApoI	RAATTY	1 cut(s)	205
AspLEI	GCGC	1 cut(s)	187
AspS9I	GGNCC	1 cut(s)	33
AsuC2I	CCSGG	1 cut(s)	123
BanI	GGYRCC	2 cut(s)	126, 184
BcnI	CCSGG	1 cut(s)	123
BfoI	RGCGCY	1 cut(s)	188
BisI	GCNGC	1 cut(s)	99
BlsI	GCNGC	1 cut(s)	100
Bme1390I	CCNGG	1 cut(s)	123
BmgT120I	GGNCC	1 cut(s)	33
BmiI	GGNNCC	3 cut(s)	35, 128, 186
BmrFI	CCNGG	1 cut(s)	123
BmsI	GCATC	1 cut(s)	78
BpuMI	CCSGG	1 cut(s)	123
BsaHI	GRCGYC	1 cut(s)	185
BsaJI	CCNNGG	2 cut(s)	102, 122
BsaXI	ACNNNNNCTCC	2 cut(s)	297, 327
Bsc4I	CCNNNNNNNGG	1 cut(s)	136
Bse118I	RCCGGY	2 cut(s)	30, 187
BseDI	CCNNGG	2 cut(s)	102, 122
BseLI	CCNNNNNNNGG	1 cut(s)	136
BseRI	GAGGAG	1 cut(s)	45
BshFI	GGCC	1 cut(s)	34
BshNI	GGYRCC	2 cut(s)	126, 184
BsiSI	CCGG	3 cut(s)	31, 122, 188
BsiWI	CGTACG	1 cut(s)	335
BslI	CCNNNNNNNGG	1 cut(s)	136
BsnI	GGCC	1 cut(s)	34
Bsp143I	GATC	2 cut(s)	237, 319
Bsp19I	CCATGG	1 cut(s)	102
BspACI	CCGC	1 cut(s)	99
BspANI	GGCC	1 cut(s)	34
BspLI	GGNNCC	3 cut(s)	35, 128, 186
BspPI	GGATC	1 cut(s)	327
BspT107I	GGYRCC	2 cut(s)	126, 184
BsrFI	RCCGGY	2 cut(s)	30, 187
BssAI	RCCGGY	2 cut(s)	30, 187
BssECI	CCNNGG	2 cut(s)	102, 122
BssMI	GATC	2 cut(s)	237, 319
BssNAI	GTATAC	1 cut(s)	295
BssNI	GRCGYC	1 cut(s)	185
BssT1I	CCWWGG	1 cut(s)	102
Bst1107I	GTATAC	1 cut(s)	295
Bst4CI	ACNGT	1 cut(s)	335
BstACI	GRCGYC	1 cut(s)	185
BstC8I	GCNNGC	2 cut(s)	28, 32
BstDEI	CTNAG	1 cut(s)	91
BstDSI	CCRYGG	1 cut(s)	102
BstENI	CCTNNNNNAGG	1 cut(s)	134
BstH2I	RGCGCY	1 cut(s)	188
BstHHI	GCGC	1 cut(s)	187
BstKTI	GATC	2 cut(s)	240, 322
BstMBI	GATC	2 cut(s)	237, 319
BstMWI	GCNNNNNNNGC	1 cut(s)	107
BstSCI	CCNGG	1 cut(s)	121
BstX2I	RGATCY	1 cut(s)	319
BstYI	RGATCY	1 cut(s)	319
BstZ17I	GTATAC	1 cut(s)	295
BsuRI	GGCC	1 cut(s)	34
BtgI	CCRYGG	1 cut(s)	102
BtsI	GCAGTG	1 cut(s)	64
BtsIMutI	CAGTG	1 cut(s)	64
Cac8I	GCNNGC	2 cut(s)	28, 32
CfoI	GCGC	1 cut(s)	187
Cfr10I	RCCGGY	2 cut(s)	30, 187
Cfr13I	GGNCC	1 cut(s)	33
Csp6I	GTAC	2 cut(s)	51, 336
CviAII	CATG	1 cut(s)	103
CviJI	RGCY	6 cut(s)	15, 34, 110, 202, 247, 271
CviKI_1	RGCY	6 cut(s)	15, 34, 110, 202, 247, 271
CviQI	GTAC	2 cut(s)	51, 336
DdeI	CTNAG	1 cut(s)	91
DinI	GGCGCC	1 cut(s)	186
DpnI	GATC	2 cut(s)	239, 321
DpnII	GATC	2 cut(s)	237, 319
Eco130I	CCWWGG	1 cut(s)	102
EcoNI	CCTNNNNNAGG	1 cut(s)	134
EcoRI	GAATTC	1 cut(s)	205
EcoT14I	CCWWGG	1 cut(s)	102
EgeI	GGCGCC	1 cut(s)	186
EheI	GGCGCC	1 cut(s)	186
ErhI	CCWWGG	1 cut(s)	102
FaeI	CATG	1 cut(s)	106
FaiI	YATR	7 cut(s)	104, 288, 295, 326, 356, 372, 376
FatI	CATG	1 cut(s)	102
FblI	GTMKAC	1 cut(s)	294
Fnu4HI	GCNGC	1 cut(s)	99
Fsp4HI	GCNGC	1 cut(s)	99
GlaI	GCGC	1 cut(s)	186
GluI	GCNGC	1 cut(s)	99
HaeII	RGCGCY	1 cut(s)	188
HaeIII	GGCC	1 cut(s)	34
HapII	CCGG	3 cut(s)	31, 122, 188
HhaI	GCGC	1 cut(s)	187
Hin1I	GRCGYC	1 cut(s)	185
Hin1II	CATG	1 cut(s)	106
Hin6I	GCGC	1 cut(s)	185
HinP1I	GCGC	1 cut(s)	185
HinfI	GANTC	1 cut(s)	21
HpaII	CCGG	3 cut(s)	31, 122, 188
Hpy166II	GTNNAC	1 cut(s)	295
Hpy188I	TCNGA	1 cut(s)	20
Hpy188III	TCNNGA	1 cut(s)	113
Hpy8I	GTNNAC	1 cut(s)	295
HpyCH4III	ACNGT	1 cut(s)	335
HpyCH4V	TGCA	2 cut(s)	69, 82
HpyF10VI	GCNNNNNNNGC	1 cut(s)	107
HpyF3I	CTNAG	1 cut(s)	91
Hsp92I	GRCGYC	1 cut(s)	185
Hsp92II	CATG	1 cut(s)	106
HspAI	GCGC	1 cut(s)	185
KasI	GGCGCC	1 cut(s)	184
KroI	GCCGGC	1 cut(s)	30
KroNI	GCCGGC	1 cut(s)	32
Kzo9I	GATC	2 cut(s)	237, 319
LpnPI	CCDG	4 cut(s)	44, 135, 143, 201
LweI	GCATC	1 cut(s)	78
MalI	GATC	2 cut(s)	239, 321
MboI	GATC	2 cut(s)	237, 319
MboII	GAAGA	2 cut(s)	180, 208
MfeI	CAATTG	1 cut(s)	83
MflI	RGATCY	1 cut(s)	319
MluCI	AATT	4 cut(s)	6, 83, 154, 205
Mly113I	GGCGCC	1 cut(s)	185
MnlI	CCTC	4 cut(s)	56, 66, 283, 299
MroNI	GCCGGC	1 cut(s)	30
MseI	TTAA	3 cut(s)	135, 180, 264
MspI	CCGG	3 cut(s)	31, 122, 188
MspR9I	CCNGG	1 cut(s)	123
MunI	CAATTG	1 cut(s)	83
MwoI	GCNNNNNNNGC	1 cut(s)	107
NaeI	GCCGGC	1 cut(s)	32
NarI	GGCGCC	1 cut(s)	185
NciI	CCSGG	1 cut(s)	123
NcoI	CCATGG	1 cut(s)	102
NdeII	GATC	2 cut(s)	237, 319
NgoMIV	GCCGGC	1 cut(s)	30
NlaIII	CATG	1 cut(s)	106
NlaIV	GGNNCC	3 cut(s)	35, 128, 186
PdiI	GCCGGC	1 cut(s)	32
PfeI	GAWTC	1 cut(s)	21
Pfl23II	CGTACG	1 cut(s)	335
PkrI	GCNGC	1 cut(s)	100
PluTI	GGCGCC	1 cut(s)	188
PspLI	CGTACG	1 cut(s)	335
PspN4I	GGNNCC	3 cut(s)	35, 128, 186
PspPI	GGNCC	1 cut(s)	33
PsuI	RGATCY	1 cut(s)	319
RsaI	GTAC	2 cut(s)	52, 337
RsaNI	GTAC	2 cut(s)	51, 336
SaqAI	TTAA	3 cut(s)	135, 180, 264
SatI	GCNGC	1 cut(s)	99
Sau3AI	GATC	2 cut(s)	237, 319
Sau96I	GGNCC	1 cut(s)	33
ScrFI	CCNGG	1 cut(s)	123
SetI	ASST	7 cut(s)	17, 81, 112, 204, 294, 300, 310
SfaNI	GCATC	1 cut(s)	78
SfoI	GGCGCC	1 cut(s)	186
SgrAI	CRCCGGYG	1 cut(s)	187
Sse9I	AATT	4 cut(s)	6, 83, 154, 205
SsiI	CCGC	1 cut(s)	99
SspDI	GGCGCC	1 cut(s)	184
StyD4I	CCNGG	1 cut(s)	121
StyI	CCWWGG	1 cut(s)	102
TaaI	ACNGT	1 cut(s)	335
TaqI	TCGA	3 cut(s)	11, 240, 351
TasI	AATT	4 cut(s)	6, 83, 154, 205
TauI	GCSGC	1 cut(s)	101
TfiI	GAWTC	1 cut(s)	21
Tru1I	TTAA	3 cut(s)	135, 180, 264
Tru9I	TTAA	3 cut(s)	135, 180, 264
TscAI	CASTG	1 cut(s)	71
TspDTI	ATGAA	1 cut(s)	132
TspGWI	ACGGA	2 cut(s)	38, 48
TspRI	CASTG	1 cut(s)	71
XagI	CCTNNNNNAGG	1 cut(s)	134
XapI	RAATTY	1 cut(s)	205
XmiI	GTMKAC	1 cut(s)	294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.