Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0001230

Physical Location & Seq

Genomic Coordinates Reverse (-)

24217086 .. 24219600

Gene Structure 2515 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1149300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGTGCACATTGGTGATACAGTTATTGAGTGATTTCAGGAAACCAAATCACTGTGATGACAAGGATTATATGCGTTGGAGGAATTGTTCGCAGCGTGACTTTACAATTAATGGGTTGATGTTTGATCCTTATGCAAGGATAGTGTACGACTACATGGAAGGCATTGAAGATATTAGAAAAGCTAAAGTCCAAACCGTGATACCTGCAAGTACTTCTTTTCGAGAGGATTGTGCTTGCATTCTACGTGCAATAAGAATTGCTGCCCGTTTAGGATTTTGTATTTCCAAGGAAACAGTTCATTCTGTTAGGAGTTTATCTTATTCAATTCTTAGGCTTGATAAGGGAAGGCTTCTCATGGAAATGAACTACATGCTAGCGTATGGTTATGCTGAAGCCTCTTTAAGGTTATTATGGAAATTTGGACTCCTAGAACTACTTCTTCCTATCCAGGCAGCATATTTTGTTCGCCATGGTTTTCGTAGACGCGACAAAAGAACTAACATGCTTTTGTCCCTTTTTTCTAACTTGGATAAACTTCTTTCGCGTGACAAGCCATGCCACAGTAGCTTATGGGTTGCAATCTTAGCATTCCACAATGCACTATCCGAACAACCTCGGGATCCGTTGGTGGTTGCTGCACTTAGCCTTGCAATTCACAATGGTGGAGATATGTTAGAAGCAGTAAGCATAGCCAAGAAAGTCACTAAAGTACATGCTGTTGGCTTCCACGAATTATTAGAAAGTCAGAATTTGAACCCTCGAGCATTGAGAGATGAAGTTAAGAATCTCGCAGCATCTCTTACATGTGCCCTCAATAATATGACTGATGAGCAAATAGTCTCTCAGGCAATGGCAGGGTACCCACAAGCACCAGATTCGGATCTGGTACTTATCCCATGGGGGTTATCTTTGAGAGTCTGCCGGATTTTTAGCTGCTTAACGTCGGGCGCAGAGAGGGGATTCATCCCGAGGCAGGGCAGCAAGATTGATTACGAGTCGTTAGCTCAGGGAGCCCTGCCAGAAGTACGGCATATTTTCGCAGGAGTTGTGTTTGATACCATATATCCTCTTAAGCCTAAATCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004652 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006276 GO:0006378 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016740 GO:0016772 GO:0016779 GO:0031123 GO:0031124 GO:0034641 GO:0043170 GO:0043412 GO:0043631 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0070566 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PolyA_pol PolyA_pol_RNAbd

Protein Analysis

362

Amino Acids

40.82

Weight (kDa)

8.94

Isoelectric Point (pI)

40.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PolyA_pol	PF01743	29 - 63	1e-05	Poly A polymerase head domain
PolyA_pol_RNAbd	PF12627	91 - 152	1.1e-14	Probable RNA and SrmB- binding site of polymerase A

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001230)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28090 AT1G28090 AT1G28090 AT1G28090 AT1G28090 AT3G48830 AT5G23690
fragaria_vesca	FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09270
malus_domestica	MD06G1133100.v1.1 MD14G1149300.v1.1 MD14G1149500.v1.1
prunus_persica	Prupe.5G144000_v2.0.a1 Prupe.5G144300_v2.0.a1
pyrus_communis	pycom06g12450 pycom14g12410
rosa_chinensis	RchiOBHm_Chr3g0469071 RchiOBHm_Chr7g0189011
rosa_laevigata	RLG00000004641 RLG00000024375 RLG00000024379 RLG00000024383 RLG00000024385
rosa_multiflora	Rmu_sc0000302.1_g000052 Rmu_sc0000326.1_g000001 Rmu_sc0007139.1_g000009 Rmu_sc0016080.1_g000004
rosa_roxburghii	Rroxscaffold_3G00265860
rosa_rugosa	Rorug03G0099300 Rorug06G0495400 Rorug06G0495500
rosa_samantha	Rh3AG148200 Rh3AG148500 Rh3BG171000 Rh3BG171100 Rh3BG171500 Rh7AG100100 Rh7BG102400 Rh7CG104000 Rh7DG102100
rosa_wichuraiana	Rw0G010940 Rw0G014560 Rw0G014590 Rw7G008650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	211
Acc65I	GGTACC	1 cut(s)	858
AccB1I	GGYRCC	1 cut(s)	858
AccI	GTMKAC	1 cut(s)	481
AccII	CGCG	2 cut(s)	486, 544
AclWI	GGATC	4 cut(s)	119, 614, 627, 888
AcsI	RAATTY	2 cut(s)	416, 748
AcuI	CTGAAG	1 cut(s)	411
AfaI	GTAC	6 cut(s)	146, 211, 711, 860, 888, 1026
AfiI	CCNNNNNNNGG	3 cut(s)	402, 973, 974
AflII	CTTAAG	1 cut(s)	1070
AflIII	ACRYGT	1 cut(s)	803
AgsI	TTSAA	3 cut(s)	167, 324, 754
AjnI	CCWGG	1 cut(s)	447
AleI	CACNNNNGTG	2 cut(s)	11, 660
AloI	GAACNNNNNNTCC	2 cut(s)	70, 102
AluBI	AGCT	4 cut(s)	182, 567, 933, 1004
AluI	AGCT	4 cut(s)	182, 567, 933, 1004
Alw21I	GWGCWC	1 cut(s)	8
Alw26I	GTCTC	1 cut(s)	844
Alw44I	GTGCAC	1 cut(s)	4
AlwI	GGATC	4 cut(s)	119, 614, 627, 888
Ama87I	CYCGRG	3 cut(s)	615, 759, 967
ApaLI	GTGCAC	1 cut(s)	4
ApeKI	GCWGC	7 cut(s)	91, 260, 452, 635, 791, 933, 978
ApoI	RAATTY	2 cut(s)	416, 748
AseI	ATTAAT	1 cut(s)	108
Asp700I	GAANNNNTTC	2 cut(s)	294, 435
Asp718I	GGTACC	1 cut(s)	858
AspLEI	GCGC	1 cut(s)	950
AsuHPI	GGTGA	1 cut(s)	25
AsuNHI	GCTAGC	1 cut(s)	373
AvaI	CYCGRG	3 cut(s)	615, 759, 967
BaeGI	GKGCMC	2 cut(s)	8, 811
BamHI	GGATCC	1 cut(s)	619
BanI	GGYRCC	1 cut(s)	858
BanII	GRGCYC	1 cut(s)	1015
Bbv12I	GWGCWC	1 cut(s)	8
BbvI	GCAGC	7 cut(s)	103, 247, 464, 622, 803, 920, 990
BceAI	ACGGC	1 cut(s)	1043
BcgI	CGANNNNNNTGC	2 cut(s)	858, 892
BciT130I	CCWGG	1 cut(s)	449
BcoDI	GTCTC	1 cut(s)	844
BfaI	CTAG	2 cut(s)	374, 428
BfrI	CTTAAG	1 cut(s)	1070
BfuAI	ACCTGC	1 cut(s)	211
BisI	GCNGC	7 cut(s)	92, 261, 453, 636, 792, 934, 979
BlsI	GCNGC	7 cut(s)	93, 262, 454, 637, 793, 935, 980
BmcAI	AGTACT	1 cut(s)	211
Bme1390I	CCNGG	1 cut(s)	449
BmeT110I	CYCGRG	3 cut(s)	615, 759, 967
BmiI	GGNNCC	3 cut(s)	621, 860, 1012
BmrFI	CCNGG	1 cut(s)	449
BmsI	GCATC	1 cut(s)	803
BmtI	GCTAGC	1 cut(s)	377
Bpu10I	CCTNAGC	1 cut(s)	1005
BsaAI	YACGTR	1 cut(s)	245
BsaBI	GATNNNNATC	1 cut(s)	879
BsaJI	CCNNGG	5 cut(s)	285, 469, 614, 896, 968
BsaXI	ACNNNNNCTCC	2 cut(s)	70, 100
Bsc4I	CCNNNNNNNGG	3 cut(s)	402, 973, 974
Bse3DI	GCAATG	1 cut(s)	855
Bse8I	GATNNNNATC	1 cut(s)	879
BseBI	CCWGG	1 cut(s)	449
BseDI	CCNNGG	5 cut(s)	285, 469, 614, 896, 968
BseGI	GGATG	1 cut(s)	963
BseJI	GATNNNNATC	1 cut(s)	879
BseLI	CCNNNNNNNGG	3 cut(s)	402, 973, 974
BseMI	GCAATG	1 cut(s)	855
BseMII	CTCAG	2 cut(s)	857, 1019
BseSI	GKGCMC	2 cut(s)	8, 811
BseXI	GCAGC	7 cut(s)	103, 247, 464, 622, 803, 920, 990
BsgI	GTGCAG	1 cut(s)	621
Bsh1236I	CGCG	2 cut(s)	486, 544
BshNI	GGYRCC	1 cut(s)	858
BsiHKAI	GWGCWC	1 cut(s)	8
BsiHKCI	CYCGRG	3 cut(s)	615, 759, 967
BsiSI	CCGG	1 cut(s)	922
BslFI	GGGAC	1 cut(s)	496
BslI	CCNNNNNNNGG	3 cut(s)	402, 973, 974
BsmAI	GTCTC	1 cut(s)	844
BsmFI	GGGAC	1 cut(s)	496
BsmI	GAATGC	2 cut(s)	237, 587
BsoBI	CYCGRG	3 cut(s)	615, 759, 967
Bsp1286I	GDGCHC	3 cut(s)	8, 811, 1015
Bsp143I	GATC	3 cut(s)	124, 619, 880
Bsp19I	CCATGG	2 cut(s)	469, 896
BspCNI	CTCAG	2 cut(s)	856, 1018
BspFNI	CGCG	2 cut(s)	486, 544
BspLI	GGNNCC	3 cut(s)	621, 860, 1012
BspMI	ACCTGC	1 cut(s)	211
BspOI	GCTAGC	1 cut(s)	377
BspPI	GGATC	4 cut(s)	119, 614, 627, 888
BspT107I	GGYRCC	1 cut(s)	858
BspTI	CTTAAG	1 cut(s)	1070
BsrDI	GCAATG	1 cut(s)	855
BssECI	CCNNGG	5 cut(s)	285, 469, 614, 896, 968
BssMI	GATC	3 cut(s)	124, 619, 880
BssT1I	CCWWGG	3 cut(s)	285, 469, 896
Bst2UI	CCWGG	1 cut(s)	449
Bst4CI	ACNGT	5 cut(s)	21, 53, 196, 295, 563
BstAFI	CTTAAG	1 cut(s)	1070
BstBAI	YACGTR	1 cut(s)	245
BstC8I	GCNNGC	2 cut(s)	235, 375
BstDEI	CTNAG	5 cut(s)	329, 583, 641, 843, 1005
BstDSI	CCRYGG	2 cut(s)	469, 896
BstENI	CCTNNNNNAGG	1 cut(s)	400
BstF5I	GGATG	1 cut(s)	963
BstFNI	CGCG	2 cut(s)	486, 544
BstHHI	GCGC	1 cut(s)	950
BstKTI	GATC	3 cut(s)	127, 622, 883
BstMAI	GTCTC	1 cut(s)	844
BstMBI	GATC	3 cut(s)	124, 619, 880
BstMWI	GCNNNNNNNGC	4 cut(s)	550, 564, 584, 1010
BstNI	CCWGG	1 cut(s)	449
BstNSI	RCATGY	4 cut(s)	373, 505, 716, 807
BstSCI	CCNGG	1 cut(s)	447
BstSLI	GKGCMC	2 cut(s)	8, 811
BstUI	CGCG	2 cut(s)	486, 544
BstV1I	GCAGC	7 cut(s)	103, 247, 464, 622, 803, 920, 990
BstX2I	RGATCY	2 cut(s)	619, 880
BstYI	RGATCY	2 cut(s)	619, 880
BtgI	CCRYGG	2 cut(s)	469, 896
BtsCI	GGATG	1 cut(s)	963
BtsIMutI	CAGTG	1 cut(s)	49
BveI	ACCTGC	1 cut(s)	211
Cac8I	GCNNGC	2 cut(s)	235, 375
CfoI	GCGC	1 cut(s)	950
CseI	GACGC	1 cut(s)	492
Csp6I	GTAC	6 cut(s)	145, 210, 710, 859, 887, 1025
CviAII	CATG	9 cut(s)	154, 355, 370, 470, 502, 555, 713, 804, 897
CviQI	GTAC	6 cut(s)	145, 210, 710, 859, 887, 1025
DdeI	CTNAG	5 cut(s)	329, 583, 641, 843, 1005
DpnI	GATC	3 cut(s)	126, 621, 882
DpnII	GATC	3 cut(s)	124, 619, 880
Eco130I	CCWWGG	3 cut(s)	285, 469, 896
Eco24I	GRGCYC	1 cut(s)	1015
Eco57I	CTGAAG	1 cut(s)	411
Eco88I	CYCGRG	3 cut(s)	615, 759, 967
EcoNI	CCTNNNNNAGG	1 cut(s)	400
EcoRII	CCWGG	1 cut(s)	447
EcoT14I	CCWWGG	3 cut(s)	285, 469, 896
EcoT38I	GRGCYC	1 cut(s)	1015
ErhI	CCWWGG	3 cut(s)	285, 469, 896
FaeI	CATG	9 cut(s)	157, 358, 373, 473, 505, 558, 716, 807, 900
FalI	AAGNNNNNCTT	2 cut(s)	199, 231
FaqI	GGGAC	1 cut(s)	496
FatI	CATG	9 cut(s)	153, 354, 369, 469, 501, 554, 712, 803, 896
FblI	GTMKAC	1 cut(s)	481
Fnu4HI	GCNGC	7 cut(s)	92, 261, 453, 636, 792, 934, 979
FokI	GGATG	1 cut(s)	950
FriOI	GRGCYC	1 cut(s)	1015
Fsp4HI	GCNGC	7 cut(s)	92, 261, 453, 636, 792, 934, 979
FspBI	CTAG	2 cut(s)	374, 428
GlaI	GCGC	1 cut(s)	949
GluI	GCNGC	7 cut(s)	92, 261, 453, 636, 792, 934, 979
HapII	CCGG	1 cut(s)	922
HgaI	GACGC	1 cut(s)	492
HhaI	GCGC	1 cut(s)	950
Hin1II	CATG	9 cut(s)	157, 358, 373, 473, 505, 558, 716, 807, 900
Hin6I	GCGC	1 cut(s)	948
HinP1I	GCGC	1 cut(s)	948
HinfI	GANTC	6 cut(s)	423, 784, 875, 915, 960, 995
HpaII	CCGG	1 cut(s)	922
HphI	GGTGA	1 cut(s)	25
Hpy166II	GTNNAC	3 cut(s)	6, 145, 482
Hpy188I	TCNGA	3 cut(s)	607, 747, 880
Hpy188III	TCNNGA	5 cut(s)	37, 221, 617, 967, 1083
Hpy8I	GTNNAC	3 cut(s)	6, 145, 482
Hpy99I	CGWCG	1 cut(s)	946
HpyAV	CCTTC	2 cut(s)	152, 339
HpyCH4III	ACNGT	5 cut(s)	21, 53, 196, 295, 563
HpyCH4IV	ACGT	2 cut(s)	244, 941
HpyCH4V	TGCA	9 cut(s)	6, 134, 206, 237, 248, 578, 599, 638, 650
HpyF10VI	GCNNNNNNNGC	4 cut(s)	550, 564, 584, 1010
HpyF3I	CTNAG	5 cut(s)	329, 583, 641, 843, 1005
HpySE526I	ACGT	2 cut(s)	244, 941
Hsp92II	CATG	9 cut(s)	157, 358, 373, 473, 505, 558, 716, 807, 900
HspAI	GCGC	1 cut(s)	948
KpnI	GGTACC	1 cut(s)	862
Kzo9I	GATC	3 cut(s)	124, 619, 880
LmnI	GCTCC	1 cut(s)	1010
Lsp1109I	GCAGC	7 cut(s)	103, 247, 464, 622, 803, 920, 990
LweI	GCATC	1 cut(s)	803
MaeI	CTAG	2 cut(s)	374, 428
MaeII	ACGT	2 cut(s)	244, 941
MaeIII	GTNAC	3 cut(s)	95, 545, 700
MalI	GATC	3 cut(s)	126, 621, 882
MboI	GATC	3 cut(s)	124, 619, 880
MboII	GAAGA	2 cut(s)	179, 431
MflI	RGATCY	2 cut(s)	619, 880
MhlI	GDGCHC	3 cut(s)	8, 811, 1015
MluCI	AATT	8 cut(s)	82, 105, 255, 324, 416, 651, 731, 748
MlyI	GAGTC	3 cut(s)	417, 924, 1004
MmeI	TCCRAC	1 cut(s)	56
MnlI	CCTC	9 cut(s)	72, 217, 406, 624, 768, 821, 948, 963, 1077
MroXI	GAANNNNTTC	2 cut(s)	294, 435
MseI	TTAA	5 cut(s)	108, 401, 780, 938, 1071
MslI	CAYNNNNRTG	4 cut(s)	11, 54, 359, 660
MspCI	CTTAAG	1 cut(s)	1070
MspI	CCGG	1 cut(s)	922
MspR9I	CCNGG	1 cut(s)	449
Mva1269I	GAATGC	2 cut(s)	237, 587
MvaI	CCWGG	1 cut(s)	449
MvnI	CGCG	2 cut(s)	486, 544
MwoI	GCNNNNNNNGC	4 cut(s)	550, 564, 584, 1010
NcoI	CCATGG	2 cut(s)	469, 896
NdeII	GATC	3 cut(s)	124, 619, 880
NheI	GCTAGC	1 cut(s)	373
NlaIII	CATG	9 cut(s)	157, 358, 373, 473, 505, 558, 716, 807, 900
NlaIV	GGNNCC	3 cut(s)	621, 860, 1012
NmuCI	GTSAC	3 cut(s)	95, 545, 700
NspI	RCATGY	4 cut(s)	373, 505, 716, 807
OliI	CACNNNNGTG	2 cut(s)	11, 660
PaeR7I	CTCGAG	1 cut(s)	759
PciI	ACATGT	1 cut(s)	803
PctI	GAATGC	2 cut(s)	237, 587
PdmI	GAANNNNTTC	2 cut(s)	294, 435
PfeI	GAWTC	3 cut(s)	784, 875, 960
PkrI	GCNGC	7 cut(s)	93, 262, 454, 637, 793, 935, 980
PleI	GAGTC	3 cut(s)	417, 923, 1003
PpsI	GAGTC	3 cut(s)	417, 923, 1003
Ppu21I	YACGTR	1 cut(s)	245
PscI	ACATGT	1 cut(s)	803
PshBI	ATTAAT	1 cut(s)	108
Psp6I	CCWGG	1 cut(s)	447
PspGI	CCWGG	1 cut(s)	447
PspN4I	GGNNCC	3 cut(s)	621, 860, 1012
PspXI	VCTCGAGB	1 cut(s)	759
PsuI	RGATCY	2 cut(s)	619, 880
RsaI	GTAC	6 cut(s)	146, 211, 711, 860, 888, 1026
RsaNI	GTAC	6 cut(s)	145, 210, 710, 859, 887, 1025
RseI	CAYNNNNRTG	4 cut(s)	11, 54, 359, 660
SaqAI	TTAA	5 cut(s)	108, 401, 780, 938, 1071
SatI	GCNGC	7 cut(s)	92, 261, 453, 636, 792, 934, 979
Sau3AI	GATC	3 cut(s)	124, 619, 880
ScaI	AGTACT	1 cut(s)	211
SchI	GAGTC	3 cut(s)	417, 924, 1004
ScrFI	CCNGG	1 cut(s)	449
SduI	GDGCHC	3 cut(s)	8, 811, 1015
SetI	ASST	9 cut(s)	184, 205, 247, 407, 569, 616, 935, 944, 1006
SfaNI	GCATC	1 cut(s)	803
Sfr274I	CTCGAG	1 cut(s)	759
SlaI	CTCGAG	1 cut(s)	759
SmiMI	CAYNNNNRTG	4 cut(s)	11, 54, 359, 660
SmlI	CTYRAG	2 cut(s)	759, 1070
SmoI	CTYRAG	2 cut(s)	759, 1070
Sse9I	AATT	8 cut(s)	82, 105, 255, 324, 416, 651, 731, 748
SspMI	CTAG	2 cut(s)	374, 428
StyD4I	CCNGG	1 cut(s)	447
StyI	CCWWGG	3 cut(s)	285, 469, 896
TaaI	ACNGT	5 cut(s)	21, 53, 196, 295, 563
TaiI	ACGT	2 cut(s)	247, 944
TaqI	TCGA	2 cut(s)	220, 760
TasI	AATT	8 cut(s)	82, 105, 255, 324, 416, 651, 731, 748
TatI	WGTACW	2 cut(s)	209, 709
TfiI	GAWTC	3 cut(s)	784, 875, 960
Tru1I	TTAA	5 cut(s)	108, 401, 780, 938, 1071
Tru9I	TTAA	5 cut(s)	108, 401, 780, 938, 1071
TscAI	CASTG	1 cut(s)	56
TseFI	GTSAC	3 cut(s)	95, 545, 700
TseI	GCWGC	7 cut(s)	91, 260, 452, 635, 791, 933, 978
Tsp45I	GTSAC	3 cut(s)	95, 545, 700
TspDTI	ATGAA	4 cut(s)	287, 377, 789, 952
TspGWI	ACGGA	1 cut(s)	612
TspRI	CASTG	1 cut(s)	56
Vha464I	CTTAAG	1 cut(s)	1070
VneI	GTGCAC	1 cut(s)	4
VspI	ATTAAT	1 cut(s)	108
XagI	CCTNNNNNAGG	1 cut(s)	400
XapI	RAATTY	2 cut(s)	416, 748
XceI	RCATGY	4 cut(s)	373, 505, 716, 807
XhoI	CTCGAG	1 cut(s)	759
XmiI	GTMKAC	1 cut(s)	481
XmnI	GAANNNNTTC	2 cut(s)	294, 435
XspI	CTAG	2 cut(s)	374, 428
ZrmI	AGTACT	1 cut(s)	211

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.