Rw0G010940

Belongs to the tRNA nucleotidyltransferase poly(A) polymerase family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00473
Physical Location & Seq
Reverse (-)
1968 .. 7096
5129 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G010940.1

Sequence Viewer

Length: 1389 bp
ATGGAAGAACCACAAGGAACTAGGCCTCGTTTGGTTCACGGAAAGGAAAGTAATTCATTTCAGCATTCGAGTAACAGATACAGGACAAAGAGCATGACCGACCACCCCAAGAAGGCCCAAATCCAAACGAAGTTGGTTTTTGATGTCATAAGTTCTAGCTTAACATTTTCTTGGTGCCAAGTAGTTGGAAGGCGGTTTCCTATATGTCATGTGCACATTGGTGATACGGTAGTGGAGGAGGGTTATTTTGTTTCCAGTTTTAGCATCAGTGCACGAAGCTTTGGTAGGAACTCAAGTAGTGATTTTAAAAAACCTGTACGCTGTGATGACAAGGATTTTATGCGTTGGAGCAATTGTTTGAAGCGTGACTTTATAATTAACGGGTTGATGTTTGATCCTTATGCAAGGATAGTGTATGACTACTTGGGAGGAATAGAAGATCTTAGAAAAGCTAAAGTCCAAACTGTTGTACCAGCAAGTACTTCATTTCGAGAGGATTGTGCTCGCATTCTACGTGCCATAAGAATTGCTGCTCGTTTAGGATTCCGTATTTCAAAGGAAACAGCTAATTCTATTAAAAATTTATCCTACTCAATTCTTAGTTGGATTACTCATTCAGTACTTCATACTTTAGGGATGGATCCTCATGGAAATGAATTATATGATGGCGTATGGGCTGAAGCTTCCCTCCGATTATTATGGAAATTTGGACTTCTGGAACTACTTCTACCCATCCAGGCAGCATATTTTGTTCTCCATGGATTGCGAAGACGAGACAAAAGGTCTAACATGGTTTTGTCCCTTTTTTCTAACTTGGATAAACTTCTTGCACCTGTCAAGCCGTGCCACAGTAGCTTATGGATTGCAATCTTAGCATTGCATAAAGCACTCTCCGAACAACCTCGAGATGCGTTGGTGGTTGCTGCATTTACCCTTGCTGTTCACAATGGTGGAGATATGTCAGAAGCAGTGGACATAACCAGGACTATCACTAAACCACATGATGGTAGCTTTCATGAATTATTAGAACCGAAGAGTGTGGACTCTGAAGCATATAACAAAGAGGTTAAGGATCTTGAGGCATCTTTTAGGCTGGCACTCGATCATATGACTGATGAGCAAATTGTCTCAGAGGCCATGGCAGCGTACCCACAAGCACTGTTTCCTGATCTGGTATTTATACCATGGGGATTATCTTTGAGGGTCTCCCAGATTTTCAACTGTGTAAAAGTGGGTGGGAAGCTGGGATTTGTGGCAAAGCAAGGCAGCAAGATTGACTACGAGTCATTAGCTCAGGGCAGCCTGCCAGATGTTCGGCATATTTTGCAAGATTCGTGTTTGATACCATCTATCCTCTTTAGACTAGATCTTGATCATTCTCGTCTATGA

Protein Analysis

462

Amino Acids

52.14

Weight (kDa)

8.77

Isoelectric Point (pI)

43.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 374
AccB1I GGYRCC 1 cut(s) 174
AccB7I CCANNNNNTGG 1 cut(s) 1004
AciI CCGC 1 cut(s) 193
AclWI GGATC 4 cut(s) 389, 635, 648, 1080
AcsI RAATTY 2 cut(s) 580, 704
AcuI CTGAAG 2 cut(s) 699, 1068
AfaI GTAC 5 cut(s) 318, 471, 481, 621, 1148
AfiI CCNNNNNNNGG 2 cut(s) 112, 1004
AgsI TTSAA 3 cut(s) 361, 555, 1219
AhdI GACNNNNNGTC 2 cut(s) 781, 1282
AjnI CCWGG 2 cut(s) 735, 980
AleI CACNNNNGTG 2 cut(s) 219, 948
AluBI AGCT 9 cut(s) 159, 279, 452, 566, 683, 855, 1011, 1243, 1292
AluI AGCT 9 cut(s) 159, 279, 452, 566, 683, 855, 1011, 1243, 1292
Alw21I GWGCWC 3 cut(s) 216, 274, 505
Alw26I GTCTC 3 cut(s) 768, 1132, 1210
Alw44I GTGCAC 2 cut(s) 212, 270
AlwI GGATC 4 cut(s) 389, 635, 648, 1080
Ama87I CYCGRG 1 cut(s) 903
AoxI GGCC 3 cut(s) 23, 114, 1134
ApaLI GTGCAC 2 cut(s) 212, 270
ApeKI GCWGC 6 cut(s) 530, 740, 923, 1142, 1266, 1299
ApoI RAATTY 2 cut(s) 580, 704
Asp700I GAANNNNTTC 1 cut(s) 723
AspS9I GGNCC 1 cut(s) 115
AsuHPI GGTGA 1 cut(s) 233
AvaI CYCGRG 1 cut(s) 903
BaeGI GKGCMC 2 cut(s) 216, 274
BaeI ACNNNNGTAYC 4 cut(s) 216, 249, 453, 486
BamHI GGATCC 1 cut(s) 640
BanI GGYRCC 1 cut(s) 174
BbsI GAAGAC 1 cut(s) 775
Bbv12I GWGCWC 3 cut(s) 216, 274, 505
BbvI GCAGC 6 cut(s) 517, 752, 910, 1154, 1278, 1311
BccI CCATC 5 cut(s) 631, 659, 740, 998, 1354
BceAI ACGGC 1 cut(s) 826
BciT130I CCWGG 2 cut(s) 737, 982
BclI TGATCA 1 cut(s) 1372
BcoDI GTCTC 3 cut(s) 768, 1132, 1210
BfaI CTAG 3 cut(s) 21, 156, 1364
BglII AGATCT 2 cut(s) 439, 1366
BisI GCNGC 6 cut(s) 531, 741, 924, 1143, 1267, 1300
BlsI GCNGC 6 cut(s) 532, 742, 925, 1144, 1268, 1301
BmcAI AGTACT 2 cut(s) 481, 621
Bme1390I CCNGG 2 cut(s) 737, 982
BmeRI GACNNNNNGTC 2 cut(s) 781, 1282
BmeT110I CYCGRG 1 cut(s) 903
BmgT120I GGNCC 1 cut(s) 115
BmiI GGNNCC 2 cut(s) 176, 642
BmrFI CCNGG 2 cut(s) 737, 982
BmsI GCATC 3 cut(s) 273, 898, 1091
BpiI GAAGAC 1 cut(s) 775
Bpu10I CCTNAGC 1 cut(s) 1293
BpuEI CTTGAG 2 cut(s) 277, 1097
BsaAI YACGTR 1 cut(s) 515
BsaBI GATNNNNATC 2 cut(s) 866, 1371
BsaI GGTCTC 1 cut(s) 1210
BsaJI CCNNGG 3 cut(s) 757, 1137, 1184
BsaXI ACNNNNNCTCC 2 cut(s) 340, 370
Bsc4I CCNNNNNNNGG 2 cut(s) 112, 1004
Bse1I ACTGG 1 cut(s) 255
Bse3DI GCAATG 1 cut(s) 875
Bse8I GATNNNNATC 2 cut(s) 866, 1371
BseBI CCWGG 2 cut(s) 737, 982
BseDI CCNNGG 3 cut(s) 757, 1137, 1184
BseGI GGATG 2 cut(s) 642, 732
BseJI GATNNNNATC 2 cut(s) 866, 1371
BseLI CCNNNNNNNGG 2 cut(s) 112, 1004
BseMI GCAATG 1 cut(s) 875
BseMII CTCAG 2 cut(s) 1143, 1307
BseNI ACTGG 1 cut(s) 255
BseRI GAGGAG 1 cut(s) 251
BseSI GKGCMC 2 cut(s) 216, 274
BseXI GCAGC 6 cut(s) 517, 752, 910, 1154, 1278, 1311
BseYI CCCAGC 1 cut(s) 1243
BshFI GGCC 3 cut(s) 25, 116, 1136
BshNI GGYRCC 1 cut(s) 174
BsiHKAI GWGCWC 3 cut(s) 216, 274, 505
BsiHKCI CYCGRG 1 cut(s) 903
BslFI GGGAC 1 cut(s) 784
BslI CCNNNNNNNGG 2 cut(s) 112, 1004
BsmAI GTCTC 3 cut(s) 768, 1132, 1210
BsmFI GGGAC 1 cut(s) 784
BsmI GAATGC 2 cut(s) 64, 507
BsnI GGCC 3 cut(s) 25, 116, 1136
Bso31I GGTCTC 1 cut(s) 1210
BsoBI CYCGRG 1 cut(s) 903
Bsp1286I GDGCHC 3 cut(s) 216, 274, 505
Bsp143I GATC 8 cut(s) 394, 439, 640, 1072, 1102, 1168, 1366, 1372
Bsp19I CCATGG 3 cut(s) 757, 1137, 1184
BspACI CCGC 1 cut(s) 193
BspANI GGCC 3 cut(s) 25, 116, 1136
BspCNI CTCAG 2 cut(s) 1142, 1306
BspHI TCATGA 1 cut(s) 1015
BspLI GGNNCC 2 cut(s) 176, 642
BspPI GGATC 4 cut(s) 389, 635, 648, 1080
BspT107I GGYRCC 1 cut(s) 174
BspTNI GGTCTC 1 cut(s) 1210
BsrDI GCAATG 1 cut(s) 875
BsrI ACTGG 1 cut(s) 255
BssECI CCNNGG 3 cut(s) 757, 1137, 1184
BssMI GATC 8 cut(s) 394, 439, 640, 1072, 1102, 1168, 1366, 1372
BssT1I CCWWGG 3 cut(s) 757, 1137, 1184
Bst2UI CCWGG 2 cut(s) 737, 982
Bst4CI ACNGT 5 cut(s) 229, 466, 851, 1161, 1223
Bst6I CTCTTC 1 cut(s) 1028
BstAPI GCANNNNNTGC 1 cut(s) 1324
BstBAI YACGTR 1 cut(s) 515
BstC8I GCNNGC 3 cut(s) 505, 1095, 1304
BstDEI CTNAG 5 cut(s) 443, 599, 871, 1129, 1293
BstDSI CCRYGG 3 cut(s) 757, 1137, 1184
BstF5I GGATG 2 cut(s) 642, 732
BstKTI GATC 8 cut(s) 397, 442, 643, 1075, 1105, 1171, 1369, 1375
BstMAI GTCTC 3 cut(s) 768, 1132, 1210
BstMBI GATC 8 cut(s) 394, 439, 640, 1072, 1102, 1168, 1366, 1372
BstMWI GCNNNNNNNGC 4 cut(s) 852, 872, 1142, 1324
BstNI CCWGG 2 cut(s) 737, 982
BstSCI CCNGG 2 cut(s) 735, 980
BstSLI GKGCMC 2 cut(s) 216, 274
BstV1I GCAGC 6 cut(s) 517, 752, 910, 1154, 1278, 1311
BstV2I GAAGAC 1 cut(s) 775
BstX2I RGATCY 4 cut(s) 439, 640, 1072, 1366
BstXI CCANNNNNNTGG 1 cut(s) 185
BstYI RGATCY 4 cut(s) 439, 640, 1072, 1366
BsuRI GGCC 3 cut(s) 25, 116, 1136
BtgI CCRYGG 3 cut(s) 757, 1137, 1184
BtsCI GGATG 2 cut(s) 642, 732
BtsI GCAGTG 1 cut(s) 975
BtsIMutI CAGTG 3 cut(s) 274, 975, 1157
Cac8I GCNNGC 3 cut(s) 505, 1095, 1304
CciI TCATGA 1 cut(s) 1015
Cfr13I GGNCC 1 cut(s) 115
Csp6I GTAC 5 cut(s) 317, 470, 480, 620, 1147
CviAII CATG 9 cut(s) 94, 209, 647, 758, 790, 1001, 1016, 1138, 1185
CviQI GTAC 5 cut(s) 317, 470, 480, 620, 1147
DdeI CTNAG 5 cut(s) 443, 599, 871, 1129, 1293
DpnI GATC 8 cut(s) 396, 441, 642, 1074, 1104, 1170, 1368, 1374
DpnII GATC 8 cut(s) 394, 439, 640, 1072, 1102, 1168, 1366, 1372
DraI TTTAAA 1 cut(s) 307
DriI GACNNNNNGTC 2 cut(s) 781, 1282
Eam1104I CTCTTC 1 cut(s) 1028
Eam1105I GACNNNNNGTC 2 cut(s) 781, 1282
EarI CTCTTC 1 cut(s) 1028
Eco130I CCWWGG 3 cut(s) 757, 1137, 1184
Eco147I AGGCCT 1 cut(s) 25
Eco31I GGTCTC 1 cut(s) 1210
Eco57I CTGAAG 2 cut(s) 699, 1068
Eco88I CYCGRG 1 cut(s) 903
EcoRII CCWGG 2 cut(s) 735, 980
EcoT14I CCWWGG 3 cut(s) 757, 1137, 1184
ErhI CCWWGG 3 cut(s) 757, 1137, 1184
FaeI CATG 9 cut(s) 97, 212, 650, 761, 793, 1004, 1019, 1141, 1188
FalI AAGNNNNNCTT 2 cut(s) 353, 385
FaqI GGGAC 1 cut(s) 784
FatI CATG 9 cut(s) 93, 208, 646, 757, 789, 1000, 1015, 1137, 1184
FauNDI CATATG 1 cut(s) 1107
FbaI TGATCA 1 cut(s) 1372
Fnu4HI GCNGC 6 cut(s) 531, 741, 924, 1143, 1267, 1300
FokI GGATG 2 cut(s) 649, 719
Fsp4HI GCNGC 6 cut(s) 531, 741, 924, 1143, 1267, 1300
FspBI CTAG 3 cut(s) 21, 156, 1364
GluI GCNGC 6 cut(s) 531, 741, 924, 1143, 1267, 1300
GsaI CCCAGC 1 cut(s) 1247
HaeIII GGCC 3 cut(s) 25, 116, 1136
Hin1II CATG 9 cut(s) 97, 212, 650, 761, 793, 1004, 1019, 1141, 1188
HindIII AAGCTT 2 cut(s) 277, 681
HinfI GANTC 4 cut(s) 543, 1043, 1283, 1331
HphI GGTGA 1 cut(s) 233
Hpy166II GTNNAC 6 cut(s) 37, 214, 272, 943, 973, 1042
Hpy188I TCNGA 5 cut(s) 692, 895, 964, 1048, 1132
Hpy188III TCNNGA 7 cut(s) 491, 716, 905, 1016, 1076, 1166, 1370
Hpy8I GTNNAC 6 cut(s) 37, 214, 272, 943, 973, 1042
HpyAV CCTTC 2 cut(s) 106, 183
HpyCH4III ACNGT 5 cut(s) 229, 466, 851, 1161, 1223
HpyCH4IV ACGT 1 cut(s) 514
HpyCH4V TGCA 8 cut(s) 214, 272, 404, 830, 866, 880, 926, 1327
HpyF10VI GCNNNNNNNGC 4 cut(s) 852, 872, 1142, 1324
HpyF3I CTNAG 5 cut(s) 443, 599, 871, 1129, 1293
HpySE526I ACGT 1 cut(s) 514
Hsp92II CATG 9 cut(s) 97, 212, 650, 761, 793, 1004, 1019, 1141, 1188
Ksp22I TGATCA 1 cut(s) 1372
Kzo9I GATC 8 cut(s) 394, 439, 640, 1072, 1102, 1168, 1366, 1372
LmnI GCTCC 1 cut(s) 348
Lsp1109I GCAGC 6 cut(s) 517, 752, 910, 1154, 1278, 1311
LweI GCATC 3 cut(s) 273, 898, 1091
MaeI CTAG 3 cut(s) 21, 156, 1364
MaeII ACGT 1 cut(s) 514
MaeIII GTNAC 2 cut(s) 71, 365
MalI GATC 8 cut(s) 396, 441, 642, 1074, 1104, 1170, 1368, 1374
MboI GATC 8 cut(s) 394, 439, 640, 1072, 1102, 1168, 1366, 1372
MboII GAAGA 4 cut(s) 17, 449, 780, 1045
MfeI CAATTG 1 cut(s) 352
MflI RGATCY 4 cut(s) 439, 640, 1072, 1366
MhlI GDGCHC 3 cut(s) 216, 274, 505
MlyI GAGTC 2 cut(s) 1037, 1292
MmeI TCCRAC 3 cut(s) 166, 326, 584
MroXI GAANNNNTTC 1 cut(s) 723
MseI TTAA 5 cut(s) 161, 306, 378, 576, 1068
MslI CAYNNNNRTG 3 cut(s) 219, 651, 948
MspR9I CCNGG 2 cut(s) 737, 982
MunI CAATTG 1 cut(s) 352
Mva1269I GAATGC 2 cut(s) 64, 507
MvaI CCWGG 2 cut(s) 737, 982
MwoI GCNNNNNNNGC 4 cut(s) 852, 872, 1142, 1324
NcoI CCATGG 3 cut(s) 757, 1137, 1184
NdeI CATATG 1 cut(s) 1107
NdeII GATC 8 cut(s) 394, 439, 640, 1072, 1102, 1168, 1366, 1372
NlaIII CATG 9 cut(s) 97, 212, 650, 761, 793, 1004, 1019, 1141, 1188
NlaIV GGNNCC 2 cut(s) 176, 642
NmuCI GTSAC 1 cut(s) 365
OliI CACNNNNGTG 2 cut(s) 219, 948
PaeR7I CTCGAG 1 cut(s) 903
PagI TCATGA 1 cut(s) 1015
PceI AGGCCT 1 cut(s) 25
PcsI WCGNNNNNNNCGW 1 cut(s) 511
PctI GAATGC 2 cut(s) 64, 507
PdmI GAANNNNTTC 1 cut(s) 723
PfeI GAWTC 2 cut(s) 543, 1331
PflMI CCANNNNNTGG 1 cut(s) 1004
PkrI GCNGC 6 cut(s) 532, 742, 925, 1144, 1268, 1301
PleI GAGTC 2 cut(s) 1037, 1291
PpsI GAGTC 2 cut(s) 1037, 1291
Ppu21I YACGTR 1 cut(s) 515
PsiI TTATAA 1 cut(s) 374
Psp6I CCWGG 2 cut(s) 735, 980
PspFI CCCAGC 1 cut(s) 1243
PspGI CCWGG 2 cut(s) 735, 980
PspN4I GGNNCC 2 cut(s) 176, 642
PspPI GGNCC 1 cut(s) 115
PsrI GAACNNNNNNTAC 2 cut(s) 711, 743
PsuI RGATCY 4 cut(s) 439, 640, 1072, 1366
RsaI GTAC 5 cut(s) 318, 471, 481, 621, 1148
RsaNI GTAC 5 cut(s) 317, 470, 480, 620, 1147
RseI CAYNNNNRTG 3 cut(s) 219, 651, 948
SaqAI TTAA 5 cut(s) 161, 306, 378, 576, 1068
SatI GCNGC 6 cut(s) 531, 741, 924, 1143, 1267, 1300
Sau3AI GATC 8 cut(s) 394, 439, 640, 1072, 1102, 1168, 1366, 1372
Sau96I GGNCC 1 cut(s) 115
ScaI AGTACT 2 cut(s) 481, 621
SchI GAGTC 2 cut(s) 1037, 1292
ScrFI CCNGG 2 cut(s) 737, 982
SduI GDGCHC 3 cut(s) 216, 274, 505
SfaNI GCATC 3 cut(s) 273, 898, 1091
Sfr274I CTCGAG 1 cut(s) 903
SlaI CTCGAG 1 cut(s) 903
SmiMI CAYNNNNRTG 3 cut(s) 219, 651, 948
SmlI CTYRAG 3 cut(s) 292, 903, 1076
SmoI CTYRAG 3 cut(s) 292, 903, 1076
SseBI AGGCCT 1 cut(s) 25
SsiI CCGC 1 cut(s) 193
SspMI CTAG 3 cut(s) 21, 156, 1364
StuI AGGCCT 1 cut(s) 25
StyD4I CCNGG 2 cut(s) 735, 980
StyI CCWWGG 3 cut(s) 757, 1137, 1184
TaaI ACNGT 5 cut(s) 229, 466, 851, 1161, 1223
TaiI ACGT 1 cut(s) 517
TaqI TCGA 4 cut(s) 68, 490, 904, 1101
TaqII GACCGA 1 cut(s) 113
TatI WGTACW 2 cut(s) 479, 619
TfiI GAWTC 2 cut(s) 543, 1331
Tru1I TTAA 5 cut(s) 161, 306, 378, 576, 1068
Tru9I TTAA 5 cut(s) 161, 306, 378, 576, 1068
TscAI CASTG 3 cut(s) 274, 975, 1164
TseFI GTSAC 1 cut(s) 365
TseI GCWGC 6 cut(s) 530, 740, 923, 1142, 1266, 1299
Tsp45I GTSAC 1 cut(s) 365
TspDTI ATGAA 6 cut(s) 45, 474, 614, 669, 1004, 1032
TspGWI ACGGA 2 cut(s) 54, 536
TspRI CASTG 3 cut(s) 274, 975, 1164
Van91I CCANNNNNTGG 1 cut(s) 1004
VneI GTGCAC 2 cut(s) 212, 270
XapI RAATTY 2 cut(s) 580, 704
XhoI CTCGAG 1 cut(s) 903
XmnI GAANNNNTTC 1 cut(s) 723
XspI CTAG 3 cut(s) 21, 156, 1364
ZrmI AGTACT 2 cut(s) 481, 621
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.