Rh3BG171100

Belongs to the tRNA nucleotidyltransferase poly(A) polymerase family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
Physical Location & Seq
Forward (+)
14650630 .. 14650974
345 bp
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UTR
Exon/CDS
Intron
Rh3BG171100.1

Sequence Viewer

Length: 225 bp
ATGGCAGCGTACCCACAAGCACTGTTTCCTGATCTGGTATTTATACCATGGGGATTATCTTTGAGGGTCTCCCAGATTTTCAGCTGTGTAAAAGTGGGTGGGAAGCTGGGATTTGTGGCAAAGCAAGGCAGCAAGATTGACTACGAGTCATTAGCTCAGGGCAGCCTGCCAGATGTTCGGCATATTTTTGCAAGATTCGTGTTTGATACCATCTATCCTCTTTAG

Protein Analysis

74

Amino Acids

8.22

Weight (kDa)

8.93

Isoelectric Point (pI)

35.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 11
AhdI GACNNNNNGTC 1 cut(s) 145
AluBI AGCT 3 cut(s) 84, 106, 155
AluI AGCT 3 cut(s) 84, 106, 155
Alw26I GTCTC 1 cut(s) 73
ApeKI GCWGC 3 cut(s) 5, 129, 162
BbvI GCAGC 3 cut(s) 17, 141, 174
BccI CCATC 1 cut(s) 218
BcoDI GTCTC 1 cut(s) 73
BisI GCNGC 3 cut(s) 6, 130, 163
BlsI GCNGC 3 cut(s) 7, 131, 164
BmeRI GACNNNNNGTC 1 cut(s) 145
Bpu10I CCTNAGC 1 cut(s) 156
BsaI GGTCTC 1 cut(s) 73
BsaJI CCNNGG 1 cut(s) 47
BseDI CCNNGG 1 cut(s) 47
BseMII CTCAG 1 cut(s) 170
BseXI GCAGC 3 cut(s) 17, 141, 174
BseYI CCCAGC 1 cut(s) 106
BsmAI GTCTC 1 cut(s) 73
Bso31I GGTCTC 1 cut(s) 73
Bsp143I GATC 1 cut(s) 31
Bsp19I CCATGG 1 cut(s) 47
BspCNI CTCAG 1 cut(s) 169
BspTNI GGTCTC 1 cut(s) 73
BssECI CCNNGG 1 cut(s) 47
BssMI GATC 1 cut(s) 31
BssT1I CCWWGG 1 cut(s) 47
Bst4CI ACNGT 1 cut(s) 24
BstC8I GCNNGC 1 cut(s) 167
BstDEI CTNAG 1 cut(s) 156
BstDSI CCRYGG 1 cut(s) 47
BstKTI GATC 1 cut(s) 34
BstMAI GTCTC 1 cut(s) 73
BstMBI GATC 1 cut(s) 31
BstV1I GCAGC 3 cut(s) 17, 141, 174
BtgI CCRYGG 1 cut(s) 47
BtsIMutI CAGTG 1 cut(s) 20
Cac8I GCNNGC 1 cut(s) 167
Csp6I GTAC 1 cut(s) 10
CviAII CATG 1 cut(s) 48
CviJI RGCY 4 cut(s) 84, 106, 155, 165
CviKI_1 RGCY 4 cut(s) 84, 106, 155, 165
CviQI GTAC 1 cut(s) 10
DdeI CTNAG 1 cut(s) 156
DpnI GATC 1 cut(s) 33
DpnII GATC 1 cut(s) 31
DriI GACNNNNNGTC 1 cut(s) 145
Eam1105I GACNNNNNGTC 1 cut(s) 145
Eco130I CCWWGG 1 cut(s) 47
Eco31I GGTCTC 1 cut(s) 73
EcoT14I CCWWGG 1 cut(s) 47
ErhI CCWWGG 1 cut(s) 47
FaeI CATG 1 cut(s) 51
FaiI YATR 3 cut(s) 44, 49, 183
FatI CATG 1 cut(s) 47
Fnu4HI GCNGC 3 cut(s) 6, 130, 163
Fsp4HI GCNGC 3 cut(s) 6, 130, 163
GluI GCNGC 3 cut(s) 6, 130, 163
GsaI CCCAGC 1 cut(s) 110
Hin1II CATG 1 cut(s) 51
HinfI GANTC 2 cut(s) 146, 195
Hpy188III TCNNGA 1 cut(s) 29
HpyCH4III ACNGT 1 cut(s) 24
HpyCH4V TGCA 1 cut(s) 191
HpyF3I CTNAG 1 cut(s) 156
Hsp92II CATG 1 cut(s) 51
Kzo9I GATC 1 cut(s) 31
LpnPI CCDG 7 cut(s) 20, 42, 86, 92, 143, 179, 183
Lsp1109I GCAGC 3 cut(s) 17, 141, 174
MalI GATC 1 cut(s) 33
MboI GATC 1 cut(s) 31
MlyI GAGTC 1 cut(s) 155
MnlI CCTC 1 cut(s) 57
MspA1I CMGCKG 1 cut(s) 84
NcoI CCATGG 1 cut(s) 47
NdeII GATC 1 cut(s) 31
NlaIII CATG 1 cut(s) 51
PfeI GAWTC 1 cut(s) 195
PkrI GCNGC 3 cut(s) 7, 131, 164
PleI GAGTC 1 cut(s) 154
PpsI GAGTC 1 cut(s) 154
PspFI CCCAGC 1 cut(s) 106
PvuII CAGCTG 1 cut(s) 84
RsaI GTAC 1 cut(s) 11
RsaNI GTAC 1 cut(s) 10
SatI GCNGC 3 cut(s) 6, 130, 163
Sau3AI GATC 1 cut(s) 31
SchI GAGTC 1 cut(s) 155
SetI ASST 3 cut(s) 86, 108, 157
StyI CCWWGG 1 cut(s) 47
TaaI ACNGT 1 cut(s) 24
TfiI GAWTC 1 cut(s) 195
TscAI CASTG 1 cut(s) 27
TseI GCWGC 3 cut(s) 5, 129, 162
TspRI CASTG 1 cut(s) 27
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.