Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001230

Physical Location & Seq

Genomic Coordinates Reverse (-)

61241241 .. 61242751

Gene Structure 1511 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0495400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGGCCACCGTGCTTCTTCTACACCCAACCCCAAATTTCCTCTCATCAATCCCTCCAACCCCAAATCCCAGACTTCACCACTACCGCACCAAAATACCCTTCTCGTCGTCGTCGTCGTTCCGAAACGGCGGCCCAGCAGAAACAGAGTGCCCTGTTCCGCTGGAGCAGCAGCCCATAAACGAGTACCAGAACCTCTCCACCTCCTTCCCCTTCTCGTGGGCCTCCGGCGACCTCGTCGAGTACTGCTCTCGCCTGATCGCCACCGGCGCCTCCTTCGCGCTCTTCGTGGGCCTCCCCGTCGCCTCCTTCGGCGTCTTGGGGGCCCAATCGGAGCCGCTCAAGCAGTCCCTCTACGCAGTTTCCAGTGGGTTTTTGGTGGTCACTCTCGCCGTGGTGAGGATGTACCTCGGTTGGGCTTACGTCGGCAACCGCTTGCTTAGTGCCACTGTTGAATACGAAGAGACTGGGTGGTATGATGGTCAGATATGGGTTAAGACTGCTGAAGTTTTGGCGCGTGATCGGCTTCTCGGTTCATTTTCTGTGAAGCCTGTGCTGAGCAGATTGAAGTTAACGCTGGTGACTCTTGCAGCATCGATACTTGCATGTGTGCTCGTCCTTCTTTACATTGATGGAGGCCAAATCCAAGAAGCCGAGAATCGCGTTATACGTGGAGTTTACAACGATGATTCTGCAAGATCGTTTGAGCCCGATGCGTTTTGTGGTGGTGATCCTGGTCCTCCCCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004652 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006276 GO:0006378 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016740 GO:0016772 GO:0016779 GO:0031123 GO:0031124 GO:0034641 GO:0043170 GO:0043412 GO:0043631 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0070566 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PolyA_pol PolyA_pol_RNAbd

Protein Analysis

248

Amino Acids

26.98

Weight (kDa)

5.4

Isoelectric Point (pI)

42.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CGLD27-like	PF06799	50 - 193	2.1e-53	Conserved in the green lineage and diatoms 27

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001230)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28090 AT1G28090 AT1G28090 AT1G28090 AT1G28090 AT3G48830 AT5G23690
fragaria_vesca	FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09270
malus_domestica	MD06G1133100.v1.1 MD14G1149300.v1.1 MD14G1149500.v1.1
prunus_persica	Prupe.5G144000_v2.0.a1 Prupe.5G144300_v2.0.a1
pyrus_communis	pycom06g12450 pycom14g12410
rosa_chinensis	RchiOBHm_Chr3g0469071 RchiOBHm_Chr7g0189011
rosa_laevigata	RLG00000004641 RLG00000024375 RLG00000024379 RLG00000024383 RLG00000024385
rosa_multiflora	Rmu_sc0000302.1_g000052 Rmu_sc0000326.1_g000001 Rmu_sc0007139.1_g000009 Rmu_sc0016080.1_g000004
rosa_roxburghii	Rroxscaffold_3G00265860
rosa_rugosa	Rorug03G0099300 Rorug06G0495400 Rorug06G0495500
rosa_samantha	Rh3AG148200 Rh3AG148500 Rh3BG171000 Rh3BG171100 Rh3BG171500 Rh7AG100100 Rh7BG102400 Rh7CG104000 Rh7DG102100
rosa_wichuraiana	Rw0G010940 Rw0G014560 Rw0G014590 Rw7G008650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	266
AccBSI	CCGCTC	1 cut(s)	337
AccII	CGCG	3 cut(s)	278, 514, 660
AciI	CCGC	5 cut(s)	85, 129, 158, 335, 430
AclWI	GGATC	1 cut(s)	722
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	34
AcuI	CTGAAG	1 cut(s)	522
AcyI	GRCGYC	2 cut(s)	267, 312
AfaI	GTAC	3 cut(s)	185, 242, 404
AfiI	CCNNNNNNNGG	3 cut(s)	216, 396, 412
AgsI	TTSAA	2 cut(s)	452, 565
AjnI	CCWGG	1 cut(s)	730
AjuI	GAANNNNNNNTTGG	2 cut(s)	83, 115
Alw21I	GWGCWC	1 cut(s)	612
Alw26I	GTCTC	1 cut(s)	455
AlwI	GGATC	1 cut(s)	722
AoxI	GGCC	6 cut(s)	3, 130, 219, 289, 321, 634
ApaI	GGGCCC	1 cut(s)	325
ApeKI	GCWGC	3 cut(s)	166, 169, 587
ApoI	RAATTY	1 cut(s)	34
AspLEI	GCGC	3 cut(s)	269, 280, 514
AspS9I	GGNCC	6 cut(s)	131, 219, 289, 321, 322, 734
AsuHPI	GGTGA	4 cut(s)	68, 406, 589, 737
AvaII	GGWCC	1 cut(s)	734
BaeGI	GKGCMC	2 cut(s)	152, 325
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	266
BanII	GRGCYC	2 cut(s)	325, 708
BauI	CACGAG	1 cut(s)	214
Bbv12I	GWGCWC	1 cut(s)	612
BbvI	GCAGC	3 cut(s)	178, 181, 599
BccI	CCATC	2 cut(s)	470, 623
BceAI	ACGGC	2 cut(s)	142, 374
BcgI	CGANNNNNNTGC	2 cut(s)	671, 705
BciT130I	CCWGG	1 cut(s)	732
BcoDI	GTCTC	1 cut(s)	455
BfoI	RGCGCY	1 cut(s)	270
BisI	GCNGC	5 cut(s)	130, 167, 170, 335, 588
BlpI	GCTNAGC	1 cut(s)	554
BlsI	GCNGC	5 cut(s)	131, 168, 171, 336, 589
BmcAI	AGTACT	1 cut(s)	242
Bme1390I	CCNGG	1 cut(s)	732
Bme18I	GGWCC	1 cut(s)	734
BmgT120I	GGNCC	6 cut(s)	131, 219, 289, 321, 322, 734
BmiI	GGNNCC	4 cut(s)	268, 322, 323, 333
BmrFI	CCNGG	1 cut(s)	732
BmrI	ACTGGG	1 cut(s)	474
BmsI	GCATC	2 cut(s)	599, 700
BmuI	ACTGGG	1 cut(s)	474
BplI	GAGNNNNNCTC	2 cut(s)	230, 262
BpmI	CTGGAG	1 cut(s)	182
Bpu1102I	GCTNAGC	1 cut(s)	554
BpuEI	CTTGAG	1 cut(s)	323
Bsa29I	ATCGAT	1 cut(s)	593
BsaAI	YACGTR	1 cut(s)	668
BsaHI	GRCGYC	2 cut(s)	267, 312
BsaJI	CCNNGG	2 cut(s)	390, 406
Bsc4I	CCNNNNNNNGG	3 cut(s)	216, 396, 412
Bse118I	RCCGGY	1 cut(s)	263
Bse1I	ACTGG	2 cut(s)	363, 469
BseBI	CCWGG	1 cut(s)	732
BseCI	ATCGAT	1 cut(s)	593
BseDI	CCNNGG	2 cut(s)	390, 406
BseGI	GGATG	1 cut(s)	405
BseLI	CCNNNNNNNGG	3 cut(s)	216, 396, 412
BseMII	CTCAG	1 cut(s)	545
BseNI	ACTGG	2 cut(s)	363, 469
BseSI	GKGCMC	2 cut(s)	152, 325
BseXI	GCAGC	3 cut(s)	178, 181, 599
BseYI	CCCAGC	1 cut(s)	133
Bsh1236I	CGCG	3 cut(s)	278, 514, 660
BshFI	GGCC	6 cut(s)	5, 132, 221, 291, 323, 636
BshNI	GGYRCC	1 cut(s)	266
BshVI	ATCGAT	1 cut(s)	593
BsiHKAI	GWGCWC	1 cut(s)	612
BsiSI	CCGG	2 cut(s)	225, 264
BslFI	GGGAC	1 cut(s)	331
BslI	CCNNNNNNNGG	3 cut(s)	216, 396, 412
BsmAI	GTCTC	1 cut(s)	455
BsmFI	GGGAC	1 cut(s)	331
BsnI	GGCC	6 cut(s)	5, 132, 221, 291, 323, 636
Bsp120I	GGGCCC	1 cut(s)	321
Bsp1286I	GDGCHC	4 cut(s)	152, 325, 612, 708
Bsp143I	GATC	4 cut(s)	255, 517, 695, 727
Bsp1720I	GCTNAGC	1 cut(s)	554
BspACI	CCGC	5 cut(s)	85, 129, 158, 335, 430
BspANI	GGCC	6 cut(s)	5, 132, 221, 291, 323, 636
BspCNI	CTCAG	1 cut(s)	546
BspDI	ATCGAT	1 cut(s)	593
BspFNI	CGCG	3 cut(s)	278, 514, 660
BspLI	GGNNCC	4 cut(s)	268, 322, 323, 333
BspPI	GGATC	1 cut(s)	722
BspQI	GCTCTTC	1 cut(s)	287
BspT107I	GGYRCC	1 cut(s)	266
BsrBI	CCGCTC	1 cut(s)	337
BsrFI	RCCGGY	1 cut(s)	263
BsrI	ACTGG	2 cut(s)	363, 469
BssAI	RCCGGY	1 cut(s)	263
BssECI	CCNNGG	2 cut(s)	390, 406
BssMI	GATC	4 cut(s)	255, 517, 695, 727
BssNI	GRCGYC	2 cut(s)	267, 312
BssSI	CACGAG	1 cut(s)	214
Bst2BI	CACGAG	1 cut(s)	214
Bst2UI	CCWGG	1 cut(s)	732
Bst4CI	ACNGT	2 cut(s)	10, 448
Bst6I	CTCTTC	2 cut(s)	287, 453
BstACI	GRCGYC	2 cut(s)	267, 312
BstBAI	YACGTR	1 cut(s)	668
BstC8I	GCNNGC	1 cut(s)	434
BstDEI	CTNAG	2 cut(s)	437, 554
BstDSI	CCRYGG	1 cut(s)	390
BstF5I	GGATG	1 cut(s)	405
BstFNI	CGCG	3 cut(s)	278, 514, 660
BstH2I	RGCGCY	1 cut(s)	270
BstHHI	GCGC	3 cut(s)	269, 280, 514
BstKTI	GATC	4 cut(s)	258, 520, 698, 730
BstMAI	GTCTC	1 cut(s)	455
BstMBI	GATC	4 cut(s)	255, 517, 695, 727
BstMWI	GCNNNNNNNGC	5 cut(s)	166, 266, 275, 340, 520
BstNI	CCWGG	1 cut(s)	732
BstNSI	RCATGY	1 cut(s)	606
BstSCI	CCNGG	1 cut(s)	730
BstSLI	GKGCMC	2 cut(s)	152, 325
BstUI	CGCG	3 cut(s)	278, 514, 660
BstV1I	GCAGC	3 cut(s)	178, 181, 599
Bsu15I	ATCGAT	1 cut(s)	593
BsuRI	GGCC	6 cut(s)	5, 132, 221, 291, 323, 636
BsuTUI	ATCGAT	1 cut(s)	593
BtgI	CCRYGG	1 cut(s)	390
BtsCI	GGATG	1 cut(s)	405
BtsIMutI	CAGTG	2 cut(s)	370, 444
Cac8I	GCNNGC	1 cut(s)	434
CfoI	GCGC	3 cut(s)	269, 280, 514
Cfr10I	RCCGGY	1 cut(s)	263
Cfr13I	GGNCC	6 cut(s)	131, 219, 289, 321, 322, 734
ClaI	ATCGAT	1 cut(s)	593
CseI	GACGC	1 cut(s)	301
Csp6I	GTAC	3 cut(s)	184, 241, 403
CviAII	CATG	1 cut(s)	603
CviQI	GTAC	3 cut(s)	184, 241, 403
DdeI	CTNAG	2 cut(s)	437, 554
DinI	GGCGCC	1 cut(s)	268
DpnI	GATC	4 cut(s)	257, 519, 697, 729
DpnII	GATC	4 cut(s)	255, 517, 695, 727
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	287, 453
EarI	CTCTTC	2 cut(s)	287, 453
Eco24I	GRGCYC	2 cut(s)	325, 708
Eco47I	GGWCC	1 cut(s)	734
Eco57I	CTGAAG	1 cut(s)	522
EcoO109I	RGGNCCY	1 cut(s)	321
EcoRII	CCWGG	1 cut(s)	730
EcoT38I	GRGCYC	2 cut(s)	325, 708
EgeI	GGCGCC	1 cut(s)	268
EheI	GGCGCC	1 cut(s)	268
FaeI	CATG	1 cut(s)	606
FaiI	YATR	5 cut(s)	176, 474, 487, 604, 665
FaqI	GGGAC	1 cut(s)	331
FatI	CATG	1 cut(s)	602
Fnu4HI	GCNGC	5 cut(s)	130, 167, 170, 335, 588
FokI	GGATG	1 cut(s)	412
FriOI	GRGCYC	2 cut(s)	325, 708
Fsp4HI	GCNGC	5 cut(s)	130, 167, 170, 335, 588
GlaI	GCGC	3 cut(s)	268, 279, 513
GluI	GCNGC	5 cut(s)	130, 167, 170, 335, 588
GsaI	CCCAGC	1 cut(s)	137
GsuI	CTGGAG	1 cut(s)	182
HaeII	RGCGCY	1 cut(s)	270
HaeIII	GGCC	6 cut(s)	5, 132, 221, 291, 323, 636
HapII	CCGG	2 cut(s)	225, 264
HgaI	GACGC	1 cut(s)	301
HhaI	GCGC	3 cut(s)	269, 280, 514
Hin1I	GRCGYC	2 cut(s)	267, 312
Hin1II	CATG	1 cut(s)	606
Hin6I	GCGC	3 cut(s)	267, 278, 512
HinP1I	GCGC	3 cut(s)	267, 278, 512
HincII	GTYRAC	1 cut(s)	570
HindII	GTYRAC	1 cut(s)	570
HinfI	GANTC	3 cut(s)	580, 655, 686
HpaI	GTTAAC	1 cut(s)	570
HpaII	CCGG	2 cut(s)	225, 264
HphI	GGTGA	4 cut(s)	68, 406, 589, 737
Hpy166II	GTNNAC	2 cut(s)	570, 676
Hpy188I	TCNGA	3 cut(s)	122, 331, 483
Hpy8I	GTNNAC	2 cut(s)	570, 676
Hpy99I	CGWCG	7 cut(s)	109, 112, 115, 118, 239, 302, 425
HpyAV	CCTTC	6 cut(s)	109, 214, 220, 283, 316, 626
HpyCH4III	ACNGT	2 cut(s)	10, 448
HpyCH4IV	ACGT	2 cut(s)	420, 667
HpyCH4V	TGCA	3 cut(s)	587, 602, 692
HpyF10VI	GCNNNNNNNGC	5 cut(s)	166, 266, 275, 340, 520
HpyF3I	CTNAG	2 cut(s)	437, 554
HpySE526I	ACGT	2 cut(s)	420, 667
Hsp92I	GRCGYC	2 cut(s)	267, 312
Hsp92II	CATG	1 cut(s)	606
HspAI	GCGC	3 cut(s)	267, 278, 512
KasI	GGCGCC	1 cut(s)	266
KspAI	GTTAAC	1 cut(s)	570
Kzo9I	GATC	4 cut(s)	255, 517, 695, 727
LguI	GCTCTTC	1 cut(s)	287
LmnI	GCTCC	2 cut(s)	163, 331
Lsp1109I	GCAGC	3 cut(s)	178, 181, 599
LweI	GCATC	2 cut(s)	599, 700
MaeII	ACGT	2 cut(s)	420, 667
MaeIII	GTNAC	2 cut(s)	379, 577
MalI	GATC	4 cut(s)	257, 519, 697, 729
MbiI	CCGCTC	1 cut(s)	337
MboI	GATC	4 cut(s)	255, 517, 695, 727
MboII	GAAGA	3 cut(s)	8, 274, 470
MhlI	GDGCHC	4 cut(s)	152, 325, 612, 708
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	34
MluNI	TGGCCA	1 cut(s)	5
Mly113I	GGCGCC	1 cut(s)	267
MlyI	GAGTC	1 cut(s)	574
MmeI	TCCRAC	1 cut(s)	80
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	492, 569
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	160
MspI	CCGG	2 cut(s)	225, 264
MspR9I	CCNGG	1 cut(s)	732
MvaI	CCWGG	1 cut(s)	732
MvnI	CGCG	3 cut(s)	278, 514, 660
MwoI	GCNNNNNNNGC	5 cut(s)	166, 266, 275, 340, 520
NarI	GGCGCC	1 cut(s)	267
NdeII	GATC	4 cut(s)	255, 517, 695, 727
NlaIII	CATG	1 cut(s)	606
NlaIV	GGNNCC	4 cut(s)	268, 322, 323, 333
NmeAIII	GCCGAG	1 cut(s)	676
NmuCI	GTSAC	2 cut(s)	379, 577
NspI	RCATGY	1 cut(s)	606
PciSI	GCTCTTC	1 cut(s)	287
PcsI	WCGNNNNNNNCGW	4 cut(s)	110, 113, 282, 664
PfeI	GAWTC	2 cut(s)	655, 686
PflFI	GACNNNGTC	1 cut(s)	233
PkrI	GCNGC	5 cut(s)	131, 168, 171, 336, 589
PleI	GAGTC	1 cut(s)	574
PluTI	GGCGCC	1 cut(s)	270
PpsI	GAGTC	1 cut(s)	574
Ppu21I	YACGTR	1 cut(s)	668
Psp6I	CCWGG	1 cut(s)	730
PspFI	CCCAGC	1 cut(s)	133
PspGI	CCWGG	1 cut(s)	730
PspN4I	GGNNCC	4 cut(s)	268, 322, 323, 333
PspOMI	GGGCCC	1 cut(s)	321
PspPI	GGNCC	6 cut(s)	131, 219, 289, 321, 322, 734
PsyI	GACNNNGTC	1 cut(s)	233
RsaI	GTAC	3 cut(s)	185, 242, 404
RsaNI	GTAC	3 cut(s)	184, 241, 403
SapI	GCTCTTC	1 cut(s)	287
SaqAI	TTAA	2 cut(s)	492, 569
SatI	GCNGC	5 cut(s)	130, 167, 170, 335, 588
Sau3AI	GATC	4 cut(s)	255, 517, 695, 727
Sau96I	GGNCC	6 cut(s)	131, 219, 289, 321, 322, 734
ScaI	AGTACT	1 cut(s)	242
SchI	GAGTC	1 cut(s)	574
ScrFI	CCNGG	1 cut(s)	732
SduI	GDGCHC	4 cut(s)	152, 325, 612, 708
SetI	ASST	6 cut(s)	195, 203, 234, 408, 423, 670
SfaNI	GCATC	2 cut(s)	599, 700
SfoI	GGCGCC	1 cut(s)	268
SgrAI	CRCCGGYG	1 cut(s)	263
SinI	GGWCC	1 cut(s)	734
SmlI	CTYRAG	1 cut(s)	338
SmoI	CTYRAG	1 cut(s)	338
Sse9I	AATT	1 cut(s)	34
SsiI	CCGC	5 cut(s)	85, 129, 158, 335, 430
SspDI	GGCGCC	1 cut(s)	266
StyD4I	CCNGG	1 cut(s)	730
TaaI	ACNGT	2 cut(s)	10, 448
TaiI	ACGT	2 cut(s)	423, 670
TaqI	TCGA	2 cut(s)	237, 593
TasI	AATT	1 cut(s)	34
TatI	WGTACW	1 cut(s)	240
TauI	GCSGC	2 cut(s)	132, 337
TfiI	GAWTC	2 cut(s)	655, 686
Tru1I	TTAA	2 cut(s)	492, 569
Tru9I	TTAA	2 cut(s)	492, 569
TscAI	CASTG	2 cut(s)	370, 451
TseFI	GTSAC	2 cut(s)	379, 577
TseI	GCWGC	3 cut(s)	166, 169, 587
Tsp45I	GTSAC	2 cut(s)	379, 577
TspDTI	ATGAA	1 cut(s)	522
TspRI	CASTG	2 cut(s)	370, 451
Tth111I	GACNNNGTC	1 cut(s)	233
VpaK11BI	GGWCC	1 cut(s)	734
XapI	RAATTY	1 cut(s)	34
XceI	RCATGY	1 cut(s)	606
XcmI	CCANNNNNNNNNTGG	1 cut(s)	370
ZrmI	AGTACT	1 cut(s)	242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.