Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001230

Physical Location & Seq

Genomic Coordinates Forward (+)

7987493 .. 7990664

Gene Structure 3172 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G23690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1584 bp

ATGGCGATTTCAAGTGTGGGTTTTGCTTGCAGATCCTTTTCCCCTGTTCGTACTCTCCAGTCTCACTGCTTATGGAAGATACGGTTCAACACTGTTGCTGCTGCAATTGAGACAATGGATGAGTCAGATGGTTTTGCCACGGACAGTGATCGTCAAGACAAGGTTTCTGATGAACCAAGGGATCGTGAGTGGAAACAACTGAATTCGAAAGATCTTGGACTAAGCAGCTCAATGATTGCAAAATCCACAAGAAAAGTGCTTAATGGCCTTAAAAGCAAAGGACATGATGTTTACCTTGTGGGAGGCTGTGTACGAGATCTTATTCTGAAGCGGACACCGAAAGACTTCGATATACTTACCTCTGCAGAACTTAGAGAGGTGGTTCGAACTTTCCCAAGATGTGAAATTGTTGGAAGAAGGTTTCCTATATGTCACGTACACATTGGAGATGATTTAATAGAGGTTTCGAGTTTTAGTACCTCTGCACAGAATTCTTCGAGAAATACGAGAACTGAATGCAAAGAATCGAGTGGCTCAGATGGTGATGAGGACTGTATCCGTTTGAATAACTGTTTGCAGCGTGATTTCACAATTAACGGGTTGATGTTTGATCCATATGCCAAAGTCGTATATGACTATTTGGGAGGAATGGAAGATATTAGAAAAGCTAAAGTTCGAACAGTGATTCACGCTGGCACATCTTTTCACCAGGACTGTGCTCGGATTCTTCGTGCAATAAGAATTGCTGCGCGTTTAGGTTTCAGAATGTCCAAAGAAACCGCTCATTTTATTAAGAACCTTTCCTTACTAGTACAAAGACTTGACAAGGGAAGGATCTTGATGGAAATGAATTACATGTTAGCTTATGGATCAGCAGAGGCTTCTTTGAGATTGCTGTGGAAATTTGGGATACTTGAAATTCTTCTACCAATTCAGGCAGCATATCTTGCACGCAGTGGTTTCAGGAGACGTGACAAAAGGACTAACATGCTTCTGTCTCTCTTTGCTAACTTGGATAAATTGTTAGCACCTGATAGGCCTTGTCACAGCAGCTTATGGATAGCAATCTTGGCGTTTCACAAAGCACTTGCTGATAAACCTCGAAGTCCTATAGTGGTTGCTGCGTTTAGCCTTGCTGTTCACAACTGTGGAGATATTCTAGAAGCTGTGGAAATCACAAAGAAGATCACTAGGCCACACGATAAAAGCTTCTTCGAGCTAGTAGAGCCCGAGGAGAATCTCGACTTCCAAACCCTGTTGGACGAGGTCATGGATCTTGATGCTTCTATCGAAGATGCCTTAAACCAGATGACTGATGCGTATTTTATATCGAAAGCTATGTCAGCTTACCCTCAAGCACCATATTCCGATTTGGTCTTTATACCGTTGCAGCTGTACCTTAGAGCAGGCAGAATCTTCGATTGTGTGAAAAACGAAGAGACACGAATTGGATTTGAGGCCAAGCAAGGAAGCAAGATCGAGTATGGTTCGTTAAATTCAGGATATTTTCCCGAAATTCGGCATGTATTTGCGAGGGTTGTGTTCGATACTGTTTTTCCATTAAACCTATCTCAAGAATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004652 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006276 GO:0006378 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016740 GO:0016772 GO:0016779 GO:0031123 GO:0031124 GO:0034641 GO:0043170 GO:0043412 GO:0043631 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0070566 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PolyA_pol PolyA_pol_RNAbd

Protein Analysis

527

Amino Acids

59.61

Weight (kDa)

7.92

Isoelectric Point (pI)

48.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PolyA_pol	PF01743	97 - 226	2.4e-25	Poly A polymerase head domain
PolyA_pol_RNAbd	PF12627	253 - 315	5.9e-15	Probable RNA and SrmB- binding site of polymerase A

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001230)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28090 AT1G28090 AT1G28090 AT1G28090 AT1G28090 AT3G48830 AT5G23690
fragaria_vesca	FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09270
malus_domestica	MD06G1133100.v1.1 MD14G1149300.v1.1 MD14G1149500.v1.1
prunus_persica	Prupe.5G144000_v2.0.a1 Prupe.5G144300_v2.0.a1
pyrus_communis	pycom06g12450 pycom14g12410
rosa_chinensis	RchiOBHm_Chr3g0469071 RchiOBHm_Chr7g0189011
rosa_laevigata	RLG00000004641 RLG00000024375 RLG00000024379 RLG00000024383 RLG00000024385
rosa_multiflora	Rmu_sc0000302.1_g000052 Rmu_sc0000326.1_g000001 Rmu_sc0007139.1_g000009 Rmu_sc0016080.1_g000004
rosa_roxburghii	Rroxscaffold_3G00265860
rosa_rugosa	Rorug03G0099300 Rorug06G0495400 Rorug06G0495500
rosa_samantha	Rh3AG148200 Rh3AG148500 Rh3BG171000 Rh3BG171100 Rh3BG171500 Rh7AG100100 Rh7BG102400 Rh7CG104000 Rh7DG102100
rosa_wichuraiana	Rw0G010940 Rw0G014560 Rw0G014590 Rw7G008650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	782
AccII	CGCG	1 cut(s)	751
AciI	CCGC	2 cut(s)	331, 780
AclWI	GGATC	6 cut(s)	27, 189, 605, 842, 877, 1281
AcsI	RAATTY	6 cut(s)	202, 490, 902, 918, 1495, 1515
AcuI	CTGAAG	1 cut(s)	347
AdeI	CACNNNGTG	1 cut(s)	956
AfaI	GTAC	6 cut(s)	52, 312, 438, 478, 813, 1397
AfiI	CCNNNNNNNGG	1 cut(s)	1518
AflIII	ACRYGT	1 cut(s)	855
AgsI	TTSAA	4 cut(s)	12, 88, 565, 917
AhlI	ACTAGT	1 cut(s)	808
AjiI	CACGTC	1 cut(s)	971
AjnI	CCWGG	1 cut(s)	708
AleI	CACNNNNGTG	1 cut(s)	1146
Alw21I	GWGCWC	1 cut(s)	721
Alw26I	GTCTC	5 cut(s)	66, 104, 961, 1002, 1433
AlwI	GGATC	6 cut(s)	27, 189, 605, 842, 877, 1281
Ama87I	CYCGRG	1 cut(s)	1229
AoxI	GGCC	4 cut(s)	265, 1037, 1193, 1458
ApeKI	GCWGC	9 cut(s)	98, 101, 225, 577, 746, 938, 1050, 1121, 1390
ApoI	RAATTY	6 cut(s)	202, 490, 902, 918, 1495, 1515
ArsI	GACNNNNNNTTYG	2 cut(s)	1325, 1357
Asp700I	GAANNNNTTC	2 cut(s)	344, 921
AspLEI	GCGC	1 cut(s)	751
AsuHPI	GGTGA	2 cut(s)	554, 698
AsuII	TTCGAA	3 cut(s)	206, 385, 676
AvaI	CYCGRG	1 cut(s)	1229
BanII	GRGCYC	1 cut(s)	1230
Bbv12I	GWGCWC	1 cut(s)	721
BbvI	GCAGC	9 cut(s)	85, 88, 237, 589, 733, 950, 1062, 1108, 1402
BccI	CCATC	3 cut(s)	122, 533, 835
BcgI	CGANNNNNNTGC	2 cut(s)	1399, 1433
BciT130I	CCWGG	1 cut(s)	710
BciVI	GTATCC	2 cut(s)	566, 903
BcoDI	GTCTC	5 cut(s)	66, 104, 961, 1002, 1433
BcuI	ACTAGT	1 cut(s)	808
BfaI	CTAG	4 cut(s)	809, 1160, 1191, 1220
BfmI	CTRYAG	2 cut(s)	363, 1110
BfuI	GTATCC	2 cut(s)	566, 903
BglII	AGATCT	2 cut(s)	211, 316
BisI	GCNGC	9 cut(s)	99, 102, 226, 578, 747, 939, 1051, 1122, 1391
BlsI	GCNGC	9 cut(s)	100, 103, 227, 579, 748, 940, 1052, 1123, 1392
Bme1390I	CCNGG	1 cut(s)	710
BmeT110I	CYCGRG	1 cut(s)	1229
BmgBI	CACGTC	1 cut(s)	971
BmrFI	CCNGG	1 cut(s)	710
BmsI	GCATC	3 cut(s)	1270, 1285, 1306
BpmI	CTGGAG	1 cut(s)	41
Bpu14I	TTCGAA	3 cut(s)	206, 385, 676
BpuEI	CTTGAG	2 cut(s)	1338, 1557
BsaAI	YACGTR	1 cut(s)	436
BsaBI	GATNNNNATC	1 cut(s)	1064
BsaJI	CCNNGG	3 cut(s)	138, 176, 1230
BsaXI	ACNNNNNCTCC	2 cut(s)	294, 324
Bsc4I	CCNNNNNNNGG	1 cut(s)	1518
Bse1I	ACTGG	1 cut(s)	58
Bse8I	GATNNNNATC	1 cut(s)	1064
BseBI	CCWGG	1 cut(s)	710
BseDI	CCNNGG	3 cut(s)	138, 176, 1230
BseGI	GGATG	1 cut(s)	124
BseJI	GATNNNNATC	1 cut(s)	1064
BseLI	CCNNNNNNNGG	1 cut(s)	1518
BseMII	CTCAG	1 cut(s)	549
BseNI	ACTGG	1 cut(s)	58
BseRI	GAGGAG	1 cut(s)	1247
BseXI	GCAGC	9 cut(s)	85, 88, 237, 589, 733, 950, 1062, 1108, 1402
BsgI	GTGCAG	1 cut(s)	468
Bsh1236I	CGCG	1 cut(s)	751
BshFI	GGCC	4 cut(s)	267, 1039, 1195, 1460
BsiHKAI	GWGCWC	1 cut(s)	721
BsiHKCI	CYCGRG	1 cut(s)	1229
BslI	CCNNNNNNNGG	1 cut(s)	1518
BsmAI	GTCTC	5 cut(s)	66, 104, 961, 1002, 1433
BsmBI	CGTCTC	1 cut(s)	961
BsmI	GAATGC	1 cut(s)	521
BsnI	GGCC	4 cut(s)	267, 1039, 1195, 1460
BsoBI	CYCGRG	1 cut(s)	1229
Bsp119I	TTCGAA	3 cut(s)	206, 385, 676
Bsp1286I	GDGCHC	2 cut(s)	721, 1230
BspACI	CCGC	2 cut(s)	331, 780
BspANI	GGCC	4 cut(s)	267, 1039, 1195, 1460
BspCNI	CTCAG	1 cut(s)	548
BspFNI	CGCG	1 cut(s)	751
BspMAI	CTGCAG	1 cut(s)	367
BspPI	GGATC	6 cut(s)	27, 189, 605, 842, 877, 1281
BspT104I	TTCGAA	3 cut(s)	206, 385, 676
BsrBI	CCGCTC	1 cut(s)	782
BsrI	ACTGG	1 cut(s)	58
BssECI	CCNNGG	3 cut(s)	138, 176, 1230
BssT1I	CCWWGG	1 cut(s)	176
Bst2UI	CCWGG	1 cut(s)	710
Bst6I	CTCTTC	1 cut(s)	1431
BstAPI	GCANNNNNTGC	1 cut(s)	947
BstBAI	YACGTR	1 cut(s)	436
BstBI	TTCGAA	3 cut(s)	206, 385, 676
BstC8I	GCNNGC	4 cut(s)	28, 694, 952, 1408
BstDEI	CTNAG	4 cut(s)	221, 371, 535, 1400
BstDSI	CCRYGG	1 cut(s)	138
BstF5I	GGATG	1 cut(s)	124
BstFNI	CGCG	1 cut(s)	751
BstHHI	GCGC	1 cut(s)	751
BstMAI	GTCTC	5 cut(s)	66, 104, 961, 1002, 1433
BstMWI	GCNNNNNNNGC	5 cut(s)	273, 947, 1070, 1225, 1343
BstNI	CCWGG	1 cut(s)	710
BstNSI	RCATGY	3 cut(s)	859, 991, 1526
BstSCI	CCNGG	1 cut(s)	708
BstSFI	CTRYAG	2 cut(s)	363, 1110
BstUI	CGCG	1 cut(s)	751
BstV1I	GCAGC	9 cut(s)	85, 88, 237, 589, 733, 950, 1062, 1108, 1402
BstX2I	RGATCY	5 cut(s)	32, 211, 316, 834, 1273
BstYI	RGATCY	5 cut(s)	32, 211, 316, 834, 1273
BsuI	GTATCC	2 cut(s)	566, 903
BsuRI	GGCC	4 cut(s)	267, 1039, 1195, 1460
BtgI	CCRYGG	1 cut(s)	138
BtrI	CACGTC	1 cut(s)	971
BtsCI	GGATG	1 cut(s)	124
BtsI	GCAGTG	2 cut(s)	64, 961
BtsIMutI	CAGTG	5 cut(s)	64, 90, 151, 687, 961
Cac8I	GCNNGC	4 cut(s)	28, 694, 952, 1408
CfoI	GCGC	1 cut(s)	751
Csp6I	GTAC	6 cut(s)	51, 311, 437, 477, 812, 1396
CviAII	CATG	5 cut(s)	284, 856, 988, 1270, 1523
CviQI	GTAC	6 cut(s)	51, 311, 437, 477, 812, 1396
DdeI	CTNAG	4 cut(s)	221, 371, 535, 1400
DraIII	CACNNNGTG	1 cut(s)	956
Eam1104I	CTCTTC	1 cut(s)	1431
EarI	CTCTTC	1 cut(s)	1431
Eco130I	CCWWGG	1 cut(s)	176
Eco147I	AGGCCT	1 cut(s)	1039
Eco24I	GRGCYC	1 cut(s)	1230
Eco57I	CTGAAG	1 cut(s)	347
Eco88I	CYCGRG	1 cut(s)	1229
EcoRI	GAATTC	2 cut(s)	202, 490
EcoRII	CCWGG	1 cut(s)	708
EcoT14I	CCWWGG	1 cut(s)	176
EcoT38I	GRGCYC	1 cut(s)	1230
ErhI	CCWWGG	1 cut(s)	176
Esp3I	CGTCTC	1 cut(s)	961
FaeI	CATG	5 cut(s)	287, 859, 991, 1273, 1526
FatI	CATG	5 cut(s)	283, 855, 987, 1269, 1522
FauNDI	CATATG	1 cut(s)	616
Fnu4HI	GCNGC	9 cut(s)	99, 102, 226, 578, 747, 939, 1051, 1122, 1391
FokI	GGATG	1 cut(s)	131
FriOI	GRGCYC	1 cut(s)	1230
Fsp4HI	GCNGC	9 cut(s)	99, 102, 226, 578, 747, 939, 1051, 1122, 1391
FspBI	CTAG	4 cut(s)	809, 1160, 1191, 1220
GlaI	GCGC	1 cut(s)	750
GluI	GCNGC	9 cut(s)	99, 102, 226, 578, 747, 939, 1051, 1122, 1391
GsuI	CTGGAG	1 cut(s)	41
HaeIII	GGCC	4 cut(s)	267, 1039, 1195, 1460
HhaI	GCGC	1 cut(s)	751
Hin1II	CATG	5 cut(s)	287, 859, 991, 1273, 1526
Hin6I	GCGC	1 cut(s)	749
HinP1I	GCGC	1 cut(s)	749
HindIII	AAGCTT	1 cut(s)	1207
HinfI	GANTC	6 cut(s)	122, 524, 685, 724, 1237, 1413
HphI	GGTGA	2 cut(s)	554, 698
Hpy166II	GTNNAC	4 cut(s)	292, 311, 439, 1141
Hpy188I	TCNGA	7 cut(s)	127, 169, 327, 538, 723, 764, 1369
Hpy8I	GTNNAC	4 cut(s)	292, 311, 439, 1141
HpyAV	CCTTC	2 cut(s)	411, 825
HpyCH4IV	ACGT	2 cut(s)	435, 970
HpyF10VI	GCNNNNNNNGC	5 cut(s)	273, 947, 1070, 1225, 1343
HpyF3I	CTNAG	4 cut(s)	221, 371, 535, 1400
HpySE526I	ACGT	2 cut(s)	435, 970
Hsp92II	CATG	5 cut(s)	287, 859, 991, 1273, 1526
HspAI	GCGC	1 cut(s)	749
Lsp1109I	GCAGC	9 cut(s)	85, 88, 237, 589, 733, 950, 1062, 1108, 1402
LweI	GCATC	3 cut(s)	1270, 1285, 1306
MaeI	CTAG	4 cut(s)	809, 1160, 1191, 1220
MaeII	ACGT	2 cut(s)	435, 970
MaeIII	GTNAC	3 cut(s)	431, 971, 1043
MbiI	CCGCTC	1 cut(s)	782
MfeI	CAATTG	1 cut(s)	105
MflI	RGATCY	5 cut(s)	32, 211, 316, 834, 1273
MhlI	GDGCHC	2 cut(s)	721, 1230
MlyI	GAGTC	1 cut(s)	131
MmeI	TCCRAC	2 cut(s)	391, 1239
MroXI	GAANNNNTTC	2 cut(s)	344, 921
MseI	TTAA	8 cut(s)	261, 270, 455, 594, 792, 1301, 1493, 1562
MslI	CAYNNNNRTG	1 cut(s)	1146
MspA1I	CMGCKG	1 cut(s)	1393
MspR9I	CCNGG	1 cut(s)	710
MunI	CAATTG	1 cut(s)	105
Mva1269I	GAATGC	1 cut(s)	521
MvaI	CCWGG	1 cut(s)	710
MvnI	CGCG	1 cut(s)	751
MwoI	GCNNNNNNNGC	5 cut(s)	273, 947, 1070, 1225, 1343
NdeI	CATATG	1 cut(s)	616
NlaIII	CATG	5 cut(s)	287, 859, 991, 1273, 1526
NmuCI	GTSAC	3 cut(s)	431, 971, 1043
NspI	RCATGY	3 cut(s)	859, 991, 1526
NspV	TTCGAA	3 cut(s)	206, 385, 676
OliI	CACNNNNGTG	1 cut(s)	1146
PceI	AGGCCT	1 cut(s)	1039
PciI	ACATGT	1 cut(s)	855
PcsI	WCGNNNNNNNCGW	2 cut(s)	503, 727
PctI	GAATGC	1 cut(s)	521
PdmI	GAANNNNTTC	2 cut(s)	344, 921
PfeI	GAWTC	5 cut(s)	524, 685, 724, 1237, 1413
PflFI	GACNNNGTC	1 cut(s)	1265
PkrI	GCNGC	9 cut(s)	100, 103, 227, 579, 748, 940, 1052, 1123, 1392
PleI	GAGTC	1 cut(s)	130
PpsI	GAGTC	1 cut(s)	130
Ppu21I	YACGTR	1 cut(s)	436
PscI	ACATGT	1 cut(s)	855
Psp6I	CCWGG	1 cut(s)	708
PspGI	CCWGG	1 cut(s)	708
PstI	CTGCAG	1 cut(s)	367
PsuI	RGATCY	5 cut(s)	32, 211, 316, 834, 1273
PsyI	GACNNNGTC	1 cut(s)	1265
PvuII	CAGCTG	1 cut(s)	1393
RsaI	GTAC	6 cut(s)	52, 312, 438, 478, 813, 1397
RsaNI	GTAC	6 cut(s)	51, 311, 437, 477, 812, 1396
RseI	CAYNNNNRTG	1 cut(s)	1146
SaqAI	TTAA	8 cut(s)	261, 270, 455, 594, 792, 1301, 1493, 1562
SatI	GCNGC	9 cut(s)	99, 102, 226, 578, 747, 939, 1051, 1122, 1391
SchI	GAGTC	1 cut(s)	131
ScrFI	CCNGG	1 cut(s)	710
SduI	GDGCHC	2 cut(s)	721, 1230
SfaNI	GCATC	3 cut(s)	1270, 1285, 1306
SfcI	CTRYAG	2 cut(s)	363, 1110
SfuI	TTCGAA	3 cut(s)	206, 385, 676
SmiMI	CAYNNNNRTG	1 cut(s)	1146
SmlI	CTYRAG	2 cut(s)	1353, 1572
SmoI	CTYRAG	2 cut(s)	1353, 1572
SpeI	ACTAGT	1 cut(s)	808
SseBI	AGGCCT	1 cut(s)	1039
SsiI	CCGC	2 cut(s)	331, 780
SspMI	CTAG	4 cut(s)	809, 1160, 1191, 1220
StuI	AGGCCT	1 cut(s)	1039
StyD4I	CCNGG	1 cut(s)	708
StyI	CCWWGG	1 cut(s)	176
TaiI	ACGT	2 cut(s)	438, 973
TatI	WGTACW	1 cut(s)	811
TfiI	GAWTC	5 cut(s)	524, 685, 724, 1237, 1413
Tru1I	TTAA	8 cut(s)	261, 270, 455, 594, 792, 1301, 1493, 1562
Tru9I	TTAA	8 cut(s)	261, 270, 455, 594, 792, 1301, 1493, 1562
TscAI	CASTG	5 cut(s)	71, 97, 151, 687, 961
TseFI	GTSAC	3 cut(s)	431, 971, 1043
TseI	GCWGC	9 cut(s)	98, 101, 225, 577, 746, 938, 1050, 1121, 1390
Tsp45I	GTSAC	3 cut(s)	431, 971, 1043
TspDTI	ATGAA	2 cut(s)	186, 863
TspGWI	ACGGA	2 cut(s)	155, 548
TspRI	CASTG	5 cut(s)	71, 97, 151, 687, 961
Tth111I	GACNNNGTC	1 cut(s)	1265
XapI	RAATTY	6 cut(s)	202, 490, 902, 918, 1495, 1515
XbaI	TCTAGA	1 cut(s)	1159
XceI	RCATGY	3 cut(s)	859, 991, 1526
XmnI	GAANNNNTTC	2 cut(s)	344, 921
XspI	CTAG	4 cut(s)	809, 1160, 1191, 1220

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.