Rmu_sc0000302.1_g000052

Belongs to the tRNA nucleotidyltransferase poly(A) polymerase family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000302.1
Physical Location & Seq
Reverse (-)
168768 .. 174798
6031 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000302.1_g000052.1.cds

Sequence Viewer

Length: 1533 bp
atgaattttgtgtattgggttcgtttgagctttaggttgaattcaattcaggttcagttgaacttcgttgcggccatggaggcgattgatgagcaagagggtcgttctaaggacaacaagaccaatgattcagccagtggaatgagcaatttttgttgggatgaaggagatgggaaggcaccacagtggaagaagctgaattcgaaagaggttgggattagtagttctatgattgacaagccgacccgaaaggttttgaatgtgctagagcgaaagggaggttgtgtaagggatcttatcttaaaacgcacgccaaaggactttgacattttaacttcagctgaattgagagaggtgacgagaacattttcttggtgccaagtagttggaaggcggtttcctatatctcatgtgcacattggtgatacgggaaggatcctcatggaaatgaattatttgatggcgtatggttctgctgaagcttcccttcgattattatggaaatttggacttctggaactacttctacccatccaggtaatgacttatttgttctctggttttcacttgcagtcccttttttctaacttggataaacttcttgcaccggacaagccgtgccacagtagcttatggattgcaatcttagcattgcataaagcactctccgaacaacctcgagatgcgttggtggttgctgcatttacccttgctgttcacaatggtggagatatgtcagaagcagtggacatagccaggactatcactaaaccacatgacggtagctttcatgaattattagaaccgaagagtttggactctgaagcatgtaataaagaggttaaggatcttgaggcatcttttaggctggcactcgatcatatgactgatcagcaaattgtttcagaggccatggcagcatacccacaagcaccgttttctgatctggtatttataccatggggattatctttgagggtctcccagattttcaactgcgtaaaagtgggtgggaagctgggatttgtggcaaagcaaggcagcaagattgactacgagtcattagctcagggcagcctgccagaggttcggcatatttttgcaagagtcgtgcgtgcagcaccaaaattgtcagattccttttccatggtggaagcagctttagcaaagcatggaatttcctacggactcaacctgctcaaattcttacgcattgaatttgttaatatgaatagctctgctcttgttatcttatcagtggcaattaaaatactgaatggcaatctgcatcatgagtacatcaggactgggcaccaagaaggtgggctgtgcgcaatacatgggatcaaggagggaaactctgtttctgttgcggggacttcacttaggcatgtaaaggtggcaagaaaggctgtggagaggtgctttgttgaaaatgtgaatcctgcaactcttgtcaggtacttaaaaatggggaaagaggagattgaaatacgtggagggaaagcttcaggctttgtgtacctgagttaa

Protein Analysis

510

Amino Acids

56.65

Weight (kDa)

8.74

Isoelectric Point (pI)

33.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1333
Acc36I ACCTGC 1 cut(s) 1203
AccB1I GGYRCC 3 cut(s) 178, 375, 1311
AciI CCGC 3 cut(s) 71, 394, 1373
AclWI GGATC 5 cut(s) 300, 430, 443, 855, 1352
AcoI YGGCCR 1 cut(s) 72
AcsI RAATTY 7 cut(s) 4, 40, 199, 503, 1176, 1202, 1217
AcuI CTGAAG 4 cut(s) 321, 498, 843, 1494
AfaI GTAC 3 cut(s) 1298, 1463, 1523
AfiI CCNNNNNNNGG 2 cut(s) 779, 1084
AgsI TTSAA 8 cut(s) 40, 45, 61, 259, 994, 1217, 1433, 1490
AhdI GACNNNNNGTC 1 cut(s) 1057
AjnI CCWGG 2 cut(s) 534, 755
AjuI GAANNNNNNNTTGG 2 cut(s) 355, 387
AleI CACNNNNGTG 3 cut(s) 184, 420, 723
AloI GAACNNNNNNTCC 2 cut(s) 208, 240
Alw21I GWGCWC 1 cut(s) 417
Alw26I GTCTC 1 cut(s) 985
Alw44I GTGCAC 1 cut(s) 413
AlwI GGATC 5 cut(s) 300, 430, 443, 855, 1352
Ama87I CYCGRG 1 cut(s) 678
AoxI GGCC 2 cut(s) 72, 909
ApaLI GTGCAC 1 cut(s) 413
ApeKI GCWGC 6 cut(s) 698, 917, 1041, 1074, 1118, 1157
ApoI RAATTY 7 cut(s) 4, 40, 199, 503, 1176, 1202, 1217
Asp700I GAANNNNTTC 2 cut(s) 367, 522
AspLEI GCGC 1 cut(s) 1334
AsuHPI GGTGA 2 cut(s) 367, 434
AsuII TTCGAA 1 cut(s) 203
AvaI CYCGRG 1 cut(s) 678
BaeGI GKGCMC 2 cut(s) 417, 1314
BamHI GGATCC 1 cut(s) 435
BanI GGYRCC 3 cut(s) 178, 375, 1311
Bbv12I GWGCWC 1 cut(s) 417
BbvI GCAGC 6 cut(s) 685, 929, 1053, 1086, 1130, 1169
BccI CCATC 3 cut(s) 164, 454, 539
BceAI ACGGC 1 cut(s) 601
BcgI CGANNNNNNTGC 2 cut(s) 83, 117
BciT130I CCWGG 2 cut(s) 536, 757
BclI TGATCA 1 cut(s) 889
BcoDI GTCTC 1 cut(s) 985
BfaI CTAG 1 cut(s) 266
BfuAI ACCTGC 1 cut(s) 1203
BglI GCCNNNNNGGC 1 cut(s) 80
BisI GCNGC 7 cut(s) 72, 699, 918, 1042, 1075, 1119, 1158
BlsI GCNGC 7 cut(s) 73, 700, 919, 1043, 1076, 1120, 1159
Bme1390I CCNGG 2 cut(s) 536, 757
BmeRI GACNNNNNGTC 1 cut(s) 1057
BmeT110I CYCGRG 1 cut(s) 678
BmiI GGNNCC 4 cut(s) 180, 377, 437, 1313
BmrFI CCNGG 2 cut(s) 536, 757
BmrI ACTGGG 1 cut(s) 1317
BmsI GCATC 3 cut(s) 673, 866, 1297
BmuI ACTGGG 1 cut(s) 1317
BplI GAGNNNNNCTC 2 cut(s) 1343, 1375
Bpu10I CCTNAGC 1 cut(s) 1068
Bpu14I TTCGAA 1 cut(s) 203
BpuEI CTTGAG 1 cut(s) 872
BsaAI YACGTR 1 cut(s) 1496
BsaBI GATNNNNATC 1 cut(s) 641
BsaI GGTCTC 1 cut(s) 985
BsaJI CCNNGG 4 cut(s) 75, 912, 959, 1146
BsaWI WCCGGW 1 cut(s) 607
BsaXI ACNNNNNCTCC 2 cut(s) 270, 300
Bsc4I CCNNNNNNNGG 2 cut(s) 779, 1084
Bse1I ACTGG 2 cut(s) 135, 1312
Bse3DI GCAATG 1 cut(s) 650
Bse8I GATNNNNATC 1 cut(s) 641
BseBI CCWGG 2 cut(s) 536, 757
BseDI CCNNGG 4 cut(s) 75, 912, 959, 1146
BseGI GGATG 2 cut(s) 166, 531
BseJI GATNNNNATC 1 cut(s) 641
BseLI CCNNNNNNNGG 2 cut(s) 779, 1084
BseMI GCAATG 1 cut(s) 650
BseMII CTCAG 2 cut(s) 1082, 1517
BseNI ACTGG 2 cut(s) 135, 1312
BseRI GAGGAG 1 cut(s) 1496
BseSI GKGCMC 2 cut(s) 417, 1314
BseXI GCAGC 6 cut(s) 685, 929, 1053, 1086, 1130, 1169
BseYI CCCAGC 1 cut(s) 1018
BsgI GTGCAG 1 cut(s) 1137
BshFI GGCC 2 cut(s) 74, 911
BshNI GGYRCC 3 cut(s) 178, 375, 1311
BsiHKAI GWGCWC 1 cut(s) 417
BsiHKCI CYCGRG 1 cut(s) 678
BsiSI CCGG 1 cut(s) 608
BslFI GGGAC 2 cut(s) 559, 1390
BslI CCNNNNNNNGG 2 cut(s) 779, 1084
BsmAI GTCTC 1 cut(s) 985
BsmFI GGGAC 2 cut(s) 559, 1390
BsnI GGCC 2 cut(s) 74, 911
Bso31I GGTCTC 1 cut(s) 985
BsoBI CYCGRG 1 cut(s) 678
Bsp119I TTCGAA 1 cut(s) 203
Bsp1286I GDGCHC 2 cut(s) 417, 1314
Bsp143I GATC 7 cut(s) 292, 435, 847, 877, 889, 943, 1344
Bsp19I CCATGG 4 cut(s) 75, 912, 959, 1146
BspACI CCGC 3 cut(s) 71, 394, 1373
BspANI GGCC 2 cut(s) 74, 911
BspCNI CTCAG 2 cut(s) 1081, 1518
BspHI TCATGA 2 cut(s) 790, 1291
BspLI GGNNCC 4 cut(s) 180, 377, 437, 1313
BspMI ACCTGC 1 cut(s) 1203
BspPI GGATC 5 cut(s) 300, 430, 443, 855, 1352
BspT104I TTCGAA 1 cut(s) 203
BspT107I GGYRCC 3 cut(s) 178, 375, 1311
BspTNI GGTCTC 1 cut(s) 985
BsrDI GCAATG 1 cut(s) 650
BsrI ACTGG 2 cut(s) 135, 1312
BssECI CCNNGG 4 cut(s) 75, 912, 959, 1146
BssMI GATC 7 cut(s) 292, 435, 847, 877, 889, 943, 1344
BssT1I CCWWGG 4 cut(s) 75, 912, 959, 1146
Bst2UI CCWGG 2 cut(s) 536, 757
Bst4CI ACNGT 4 cut(s) 186, 626, 782, 936
Bst6I CTCTTC 1 cut(s) 803
BstBAI YACGTR 1 cut(s) 1496
BstBI TTCGAA 1 cut(s) 203
BstC8I GCNNGC 4 cut(s) 311, 870, 1079, 1116
BstDEI CTNAG 5 cut(s) 108, 646, 1068, 1385, 1526
BstDSI CCRYGG 4 cut(s) 75, 912, 959, 1146
BstENI CCTNNNNNAGG 1 cut(s) 1082
BstF5I GGATG 2 cut(s) 166, 531
BstHHI GCGC 1 cut(s) 1334
BstKTI GATC 7 cut(s) 295, 438, 850, 880, 892, 946, 1347
BstMAI GTCTC 1 cut(s) 985
BstMBI GATC 7 cut(s) 292, 435, 847, 877, 889, 943, 1344
BstMWI GCNNNNNNNGC 6 cut(s) 80, 627, 647, 917, 1163, 1409
BstNI CCWGG 2 cut(s) 536, 757
BstNSI RCATGY 2 cut(s) 831, 1394
BstSCI CCNGG 2 cut(s) 534, 755
BstSLI GKGCMC 2 cut(s) 417, 1314
BstV1I GCAGC 6 cut(s) 685, 929, 1053, 1086, 1130, 1169
BstX2I RGATCY 3 cut(s) 292, 435, 847
BstXI CCANNNNNNTGG 2 cut(s) 386, 1322
BstYI RGATCY 3 cut(s) 292, 435, 847
BsuRI GGCC 2 cut(s) 74, 911
BtgI CCRYGG 4 cut(s) 75, 912, 959, 1146
BtsCI GGATG 2 cut(s) 166, 531
BtsI GCAGTG 1 cut(s) 750
BtsIMutI CAGTG 4 cut(s) 142, 191, 750, 1263
BveI ACCTGC 1 cut(s) 1203
Cac8I GCNNGC 4 cut(s) 311, 870, 1079, 1116
CciI TCATGA 2 cut(s) 790, 1291
CfoI GCGC 1 cut(s) 1334
Csp6I GTAC 3 cut(s) 1297, 1462, 1522
CviQI GTAC 3 cut(s) 1297, 1462, 1522
DdeI CTNAG 5 cut(s) 108, 646, 1068, 1385, 1526
DpnI GATC 7 cut(s) 294, 437, 849, 879, 891, 945, 1346
DpnII GATC 7 cut(s) 292, 435, 847, 877, 889, 943, 1344
DriI GACNNNNNGTC 1 cut(s) 1057
EaeI YGGCCR 1 cut(s) 72
Eam1104I CTCTTC 1 cut(s) 803
Eam1105I GACNNNNNGTC 1 cut(s) 1057
EarI CTCTTC 1 cut(s) 803
Eco130I CCWWGG 4 cut(s) 75, 912, 959, 1146
Eco31I GGTCTC 1 cut(s) 985
Eco57I CTGAAG 4 cut(s) 321, 498, 843, 1494
Eco88I CYCGRG 1 cut(s) 678
EcoNI CCTNNNNNAGG 1 cut(s) 1082
EcoRI GAATTC 2 cut(s) 40, 199
EcoRII CCWGG 2 cut(s) 534, 755
EcoT14I CCWWGG 4 cut(s) 75, 912, 959, 1146
ErhI CCWWGG 4 cut(s) 75, 912, 959, 1146
FalI AAGNNNNNCTT 2 cut(s) 471, 503
FaqI GGGAC 2 cut(s) 559, 1390
FauI CCCGC 1 cut(s) 1366
FauNDI CATATG 1 cut(s) 882
FbaI TGATCA 1 cut(s) 889
Fnu4HI GCNGC 7 cut(s) 72, 699, 918, 1042, 1075, 1119, 1158
FokI GGATG 2 cut(s) 173, 518
Fsp4HI GCNGC 7 cut(s) 72, 699, 918, 1042, 1075, 1119, 1158
FspBI CTAG 1 cut(s) 266
FspI TGCGCA 1 cut(s) 1333
GlaI GCGC 1 cut(s) 1333
GluI GCNGC 7 cut(s) 72, 699, 918, 1042, 1075, 1119, 1158
GsaI CCCAGC 1 cut(s) 1022
HaeIII GGCC 2 cut(s) 74, 911
HapII CCGG 1 cut(s) 608
HhaI GCGC 1 cut(s) 1334
Hin6I GCGC 1 cut(s) 1332
HinP1I GCGC 1 cut(s) 1332
HindIII AAGCTT 2 cut(s) 480, 1506
HinfI GANTC 7 cut(s) 128, 818, 1058, 1107, 1136, 1188, 1441
HpaII CCGG 1 cut(s) 608
HphI GGTGA 2 cut(s) 367, 434
Hpy166II GTNNAC 4 cut(s) 415, 718, 748, 1522
Hpy188I TCNGA 6 cut(s) 670, 739, 823, 907, 943, 1135
Hpy188III TCNNGA 6 cut(s) 515, 680, 791, 851, 1292, 1303
Hpy8I GTNNAC 4 cut(s) 415, 718, 748, 1522
HpyAV CCTTC 6 cut(s) 158, 169, 384, 426, 497, 1313
HpyCH4III ACNGT 4 cut(s) 186, 626, 782, 936
HpyCH4IV ACGT 1 cut(s) 1495
HpyF10VI GCNNNNNNNGC 6 cut(s) 80, 627, 647, 917, 1163, 1409
HpyF3I CTNAG 5 cut(s) 108, 646, 1068, 1385, 1526
HpySE526I ACGT 1 cut(s) 1495
HspAI GCGC 1 cut(s) 1332
Ksp22I TGATCA 1 cut(s) 889
Kzo9I GATC 7 cut(s) 292, 435, 847, 877, 889, 943, 1344
Lsp1109I GCAGC 6 cut(s) 685, 929, 1053, 1086, 1130, 1169
LweI GCATC 3 cut(s) 673, 866, 1297
MaeI CTAG 1 cut(s) 266
MaeII ACGT 1 cut(s) 1495
MaeIII GTNAC 1 cut(s) 355
MalI GATC 7 cut(s) 294, 437, 849, 879, 891, 945, 1346
MboI GATC 7 cut(s) 292, 435, 847, 877, 889, 943, 1344
MboII GAAGA 2 cut(s) 202, 820
MflI RGATCY 3 cut(s) 292, 435, 847
MhlI GDGCHC 2 cut(s) 417, 1314
MlyI GAGTC 4 cut(s) 812, 1067, 1116, 1182
MmeI TCCRAC 1 cut(s) 367
MroXI GAANNNNTTC 2 cut(s) 367, 522
MseI TTAA 7 cut(s) 302, 332, 843, 1224, 1266, 1466, 1531
MslI CAYNNNNRTG 4 cut(s) 184, 420, 446, 723
MspA1I CMGCKG 1 cut(s) 341
MspI CCGG 1 cut(s) 608
MspR9I CCNGG 2 cut(s) 536, 757
MvaI CCWGG 2 cut(s) 536, 757
MwoI GCNNNNNNNGC 6 cut(s) 80, 627, 647, 917, 1163, 1409
NcoI CCATGG 4 cut(s) 75, 912, 959, 1146
NdeI CATATG 1 cut(s) 882
NdeII GATC 7 cut(s) 292, 435, 847, 877, 889, 943, 1344
NlaIV GGNNCC 4 cut(s) 180, 377, 437, 1313
NmuCI GTSAC 1 cut(s) 355
NsbI TGCGCA 1 cut(s) 1333
NspI RCATGY 2 cut(s) 831, 1394
NspV TTCGAA 1 cut(s) 203
OliI CACNNNNGTG 3 cut(s) 184, 420, 723
PaeR7I CTCGAG 1 cut(s) 678
PagI TCATGA 2 cut(s) 790, 1291
PdmI GAANNNNTTC 2 cut(s) 367, 522
PfeI GAWTC 3 cut(s) 128, 1136, 1441
PkrI GCNGC 7 cut(s) 73, 700, 919, 1043, 1076, 1120, 1159
PleI GAGTC 4 cut(s) 812, 1066, 1115, 1182
PpsI GAGTC 4 cut(s) 812, 1066, 1115, 1182
Ppu21I YACGTR 1 cut(s) 1496
Psp6I CCWGG 2 cut(s) 534, 755
PspFI CCCAGC 1 cut(s) 1018
PspGI CCWGG 2 cut(s) 534, 755
PspN4I GGNNCC 4 cut(s) 180, 377, 437, 1313
PsrI GAACNNNNNNTAC 2 cut(s) 510, 542
PsuI RGATCY 3 cut(s) 292, 435, 847
PvuII CAGCTG 1 cut(s) 341
RsaI GTAC 3 cut(s) 1298, 1463, 1523
RsaNI GTAC 3 cut(s) 1297, 1462, 1522
RseI CAYNNNNRTG 4 cut(s) 184, 420, 446, 723
SaqAI TTAA 7 cut(s) 302, 332, 843, 1224, 1266, 1466, 1531
SatI GCNGC 7 cut(s) 72, 699, 918, 1042, 1075, 1119, 1158
Sau3AI GATC 7 cut(s) 292, 435, 847, 877, 889, 943, 1344
SchI GAGTC 4 cut(s) 812, 1067, 1116, 1182
ScrFI CCNGG 2 cut(s) 536, 757
SduI GDGCHC 2 cut(s) 417, 1314
SfaNI GCATC 3 cut(s) 673, 866, 1297
Sfr274I CTCGAG 1 cut(s) 678
SfuI TTCGAA 1 cut(s) 203
SlaI CTCGAG 1 cut(s) 678
SmiMI CAYNNNNRTG 4 cut(s) 184, 420, 446, 723
SmlI CTYRAG 2 cut(s) 678, 851
SmoI CTYRAG 2 cut(s) 678, 851
SsiI CCGC 3 cut(s) 71, 394, 1373
SspMI CTAG 1 cut(s) 266
StyD4I CCNGG 2 cut(s) 534, 755
StyI CCWWGG 4 cut(s) 75, 912, 959, 1146
TaaI ACNGT 4 cut(s) 186, 626, 782, 936
TaiI ACGT 1 cut(s) 1498
TaqI TCGA 4 cut(s) 203, 490, 679, 876
TatI WGTACW 1 cut(s) 1296
TauI GCSGC 1 cut(s) 74
TfiI GAWTC 3 cut(s) 128, 1136, 1441
Tru1I TTAA 7 cut(s) 302, 332, 843, 1224, 1266, 1466, 1531
Tru9I TTAA 7 cut(s) 302, 332, 843, 1224, 1266, 1466, 1531
TscAI CASTG 4 cut(s) 142, 191, 750, 1263
TseFI GTSAC 1 cut(s) 355
TseI GCWGC 6 cut(s) 698, 917, 1041, 1074, 1118, 1157
Tsp45I GTSAC 1 cut(s) 355
TspDTI ATGAA 6 cut(s) 17, 177, 464, 779, 807, 1244
TspGWI ACGGA 1 cut(s) 1200
TspRI CASTG 4 cut(s) 142, 191, 750, 1263
VneI GTGCAC 1 cut(s) 413
XagI CCTNNNNNAGG 1 cut(s) 1082
XapI RAATTY 7 cut(s) 4, 40, 199, 503, 1176, 1202, 1217
XceI RCATGY 2 cut(s) 831, 1394
XhoI CTCGAG 1 cut(s) 678
XmnI GAANNNNTTC 2 cut(s) 367, 522
XspI CTAG 1 cut(s) 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.