Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0001230

Physical Location & Seq

Genomic Coordinates Forward (+)

13069746 .. 13070374

Gene Structure 629 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG148200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGCCAGACTTCAATGCATGAAGTTTCCAGATATTATCTCCGAACAACCTCGAGATGCGTTGGTGGTTGCTGCATTTACCCTTTCTGTTCACAATGGTGGAGATATGTCAGAAGCAGTGGACATAACCAGGACTATCACTAAACCACATGACGAGTTAGACTCTGAAGCATATAACAAAGAGGTTAAGGATCTTGAGGCATCTTTTAGGCTGGCACTCGATCATATGACTGATCAGCAAATTGTCTCAGAGGCCATGGCAGCGTACCCACAAGCACTGTTTCCTGATCTGGTATTTATACCATGGGGATTATCTTTGAGGGTCTCCCAGATTTTCAGCTGTGTAAAAGTGGGTGGGAAGCTGGGATTTGTGGCAAAGCAAGGCAGCAAGATTGACTACGAGTCATTAGCTCAGGGCAGCCTGCCAGATGTTCGGCATATTTTTGCAAGATTCGTGTTTGATACCATCTATCCTCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004652 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006276 GO:0006378 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016740 GO:0016772 GO:0016779 GO:0031123 GO:0031124 GO:0034641 GO:0043170 GO:0043412 GO:0043631 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0070566 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PolyA_pol PolyA_pol_RNAbd

Protein Analysis

159

Amino Acids

17.71

Weight (kDa)

5.11

Isoelectric Point (pI)

39.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001230)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28090 AT1G28090 AT1G28090 AT1G28090 AT1G28090 AT3G48830 AT5G23690
fragaria_vesca	FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09270
malus_domestica	MD06G1133100.v1.1 MD14G1149300.v1.1 MD14G1149500.v1.1
prunus_persica	Prupe.5G144000_v2.0.a1 Prupe.5G144300_v2.0.a1
pyrus_communis	pycom06g12450 pycom14g12410
rosa_chinensis	RchiOBHm_Chr3g0469071 RchiOBHm_Chr7g0189011
rosa_laevigata	RLG00000004641 RLG00000024375 RLG00000024379 RLG00000024383 RLG00000024385
rosa_multiflora	Rmu_sc0000302.1_g000052 Rmu_sc0000326.1_g000001 Rmu_sc0007139.1_g000009 Rmu_sc0016080.1_g000004
rosa_roxburghii	Rroxscaffold_3G00265860
rosa_rugosa	Rorug03G0099300 Rorug06G0495400 Rorug06G0495500
rosa_samantha	Rh3AG148200 Rh3AG148500 Rh3BG171000 Rh3BG171100 Rh3BG171500 Rh7AG100100 Rh7BG102400 Rh7CG104000 Rh7DG102100
rosa_wichuraiana	Rw0G010940 Rw0G014560 Rw0G014590 Rw7G008650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	198
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	186
AfaI	GTAC	1 cut(s)	266
AgsI	TTSAA	1 cut(s)	14
AhdI	GACNNNNNGTC	1 cut(s)	400
AjnI	CCWGG	1 cut(s)	128
AleI	CACNNNNGTG	1 cut(s)	96
AluBI	AGCT	3 cut(s)	339, 361, 410
AluI	AGCT	3 cut(s)	339, 361, 410
Alw26I	GTCTC	2 cut(s)	250, 328
AlwI	GGATC	1 cut(s)	198
Ama87I	CYCGRG	1 cut(s)	51
AoxI	GGCC	2 cut(s)	3, 252
ApeKI	GCWGC	4 cut(s)	71, 260, 384, 417
AvaI	CYCGRG	1 cut(s)	51
BalI	TGGCCA	1 cut(s)	5
BbvI	GCAGC	4 cut(s)	58, 272, 396, 429
BccI	CCATC	1 cut(s)	473
BciT130I	CCWGG	1 cut(s)	130
BclI	TGATCA	1 cut(s)	232
BcoDI	GTCTC	2 cut(s)	250, 328
BisI	GCNGC	4 cut(s)	72, 261, 385, 418
BlsI	GCNGC	4 cut(s)	73, 262, 386, 419
Bme1390I	CCNGG	1 cut(s)	130
BmeRI	GACNNNNNGTC	1 cut(s)	400
BmeT110I	CYCGRG	1 cut(s)	51
BmrFI	CCNGG	1 cut(s)	130
BmsI	GCATC	2 cut(s)	46, 209
BplI	GAGNNNNNCTC	2 cut(s)	146, 178
Bpu10I	CCTNAGC	1 cut(s)	411
BpuEI	CTTGAG	1 cut(s)	215
BsaI	GGTCTC	1 cut(s)	328
BsaJI	CCNNGG	2 cut(s)	255, 302
BseBI	CCWGG	1 cut(s)	130
BseDI	CCNNGG	2 cut(s)	255, 302
BseMII	CTCAG	2 cut(s)	261, 425
BseXI	GCAGC	4 cut(s)	58, 272, 396, 429
BseYI	CCCAGC	1 cut(s)	361
BshFI	GGCC	2 cut(s)	5, 254
BsiHKCI	CYCGRG	1 cut(s)	51
BsmAI	GTCTC	2 cut(s)	250, 328
BsnI	GGCC	2 cut(s)	5, 254
Bso31I	GGTCTC	1 cut(s)	328
BsoBI	CYCGRG	1 cut(s)	51
Bsp143I	GATC	4 cut(s)	190, 220, 232, 286
Bsp19I	CCATGG	2 cut(s)	255, 302
BspANI	GGCC	2 cut(s)	5, 254
BspCNI	CTCAG	2 cut(s)	260, 424
BspPI	GGATC	1 cut(s)	198
BspTNI	GGTCTC	1 cut(s)	328
BssECI	CCNNGG	2 cut(s)	255, 302
BssMI	GATC	4 cut(s)	190, 220, 232, 286
BssT1I	CCWWGG	2 cut(s)	255, 302
Bst2UI	CCWGG	1 cut(s)	130
Bst4CI	ACNGT	1 cut(s)	279
BstC8I	GCNNGC	2 cut(s)	213, 422
BstDEI	CTNAG	2 cut(s)	247, 411
BstDSI	CCRYGG	2 cut(s)	255, 302
BstKTI	GATC	4 cut(s)	193, 223, 235, 289
BstMAI	GTCTC	2 cut(s)	250, 328
BstMBI	GATC	4 cut(s)	190, 220, 232, 286
BstMWI	GCNNNNNNNGC	1 cut(s)	260
BstNI	CCWGG	1 cut(s)	130
BstSCI	CCNGG	1 cut(s)	128
BstV1I	GCAGC	4 cut(s)	58, 272, 396, 429
BstX2I	RGATCY	1 cut(s)	190
BstYI	RGATCY	1 cut(s)	190
BsuRI	GGCC	2 cut(s)	5, 254
BtgI	CCRYGG	2 cut(s)	255, 302
BtsI	GCAGTG	1 cut(s)	123
BtsIMutI	CAGTG	2 cut(s)	123, 275
Cac8I	GCNNGC	2 cut(s)	213, 422
Csp6I	GTAC	1 cut(s)	265
CviAII	CATG	4 cut(s)	19, 149, 256, 303
CviJI	RGCY	7 cut(s)	5, 211, 254, 339, 361, 410, 420
CviKI_1	RGCY	7 cut(s)	5, 211, 254, 339, 361, 410, 420
CviQI	GTAC	1 cut(s)	265
DdeI	CTNAG	2 cut(s)	247, 411
DpnI	GATC	4 cut(s)	192, 222, 234, 288
DpnII	GATC	4 cut(s)	190, 220, 232, 286
DriI	GACNNNNNGTC	1 cut(s)	400
EaeI	YGGCCR	1 cut(s)	3
Eam1105I	GACNNNNNGTC	1 cut(s)	400
Eco130I	CCWWGG	2 cut(s)	255, 302
Eco31I	GGTCTC	1 cut(s)	328
Eco57I	CTGAAG	1 cut(s)	186
Eco88I	CYCGRG	1 cut(s)	51
EcoRII	CCWGG	1 cut(s)	128
EcoT14I	CCWWGG	2 cut(s)	255, 302
EcoT22I	ATGCAT	1 cut(s)	20
ErhI	CCWWGG	2 cut(s)	255, 302
FaeI	CATG	4 cut(s)	22, 152, 259, 306
FatI	CATG	4 cut(s)	18, 148, 255, 302
FauNDI	CATATG	1 cut(s)	225
FbaI	TGATCA	1 cut(s)	232
Fnu4HI	GCNGC	4 cut(s)	72, 261, 385, 418
Fsp4HI	GCNGC	4 cut(s)	72, 261, 385, 418
GluI	GCNGC	4 cut(s)	72, 261, 385, 418
GsaI	CCCAGC	1 cut(s)	365
HaeIII	GGCC	2 cut(s)	5, 254
Hin1II	CATG	4 cut(s)	22, 152, 259, 306
HinfI	GANTC	3 cut(s)	161, 401, 450
Hpy166II	GTNNAC	2 cut(s)	91, 121
Hpy188I	TCNGA	4 cut(s)	43, 112, 166, 250
Hpy188III	TCNNGA	4 cut(s)	29, 53, 194, 284
Hpy8I	GTNNAC	2 cut(s)	91, 121
HpyCH4III	ACNGT	1 cut(s)	279
HpyCH4V	TGCA	3 cut(s)	18, 74, 446
HpyF10VI	GCNNNNNNNGC	1 cut(s)	260
HpyF3I	CTNAG	2 cut(s)	247, 411
Hsp92II	CATG	4 cut(s)	22, 152, 259, 306
Ksp22I	TGATCA	1 cut(s)	232
Kzo9I	GATC	4 cut(s)	190, 220, 232, 286
Lsp1109I	GCAGC	4 cut(s)	58, 272, 396, 429
LweI	GCATC	2 cut(s)	46, 209
MalI	GATC	4 cut(s)	192, 222, 234, 288
MboI	GATC	4 cut(s)	190, 220, 232, 286
MflI	RGATCY	1 cut(s)	190
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	240
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	155, 410
MnlI	CCTC	5 cut(s)	60, 175, 190, 244, 312
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	1 cut(s)	20
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	186
MslI	CAYNNNNRTG	1 cut(s)	96
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	339
MspR9I	CCNGG	1 cut(s)	130
MvaI	CCWGG	1 cut(s)	130
MwoI	GCNNNNNNNGC	1 cut(s)	260
NcoI	CCATGG	2 cut(s)	255, 302
NdeI	CATATG	1 cut(s)	225
NdeII	GATC	4 cut(s)	190, 220, 232, 286
NlaIII	CATG	4 cut(s)	22, 152, 259, 306
NsiI	ATGCAT	1 cut(s)	20
OliI	CACNNNNGTG	1 cut(s)	96
PaeR7I	CTCGAG	1 cut(s)	51
PfeI	GAWTC	1 cut(s)	450
PkrI	GCNGC	4 cut(s)	73, 262, 386, 419
PleI	GAGTC	2 cut(s)	155, 409
PpsI	GAGTC	2 cut(s)	155, 409
Psp6I	CCWGG	1 cut(s)	128
PspFI	CCCAGC	1 cut(s)	361
PspGI	CCWGG	1 cut(s)	128
PsuI	RGATCY	1 cut(s)	190
PvuII	CAGCTG	1 cut(s)	339
RsaI	GTAC	1 cut(s)	266
RsaNI	GTAC	1 cut(s)	265
RseI	CAYNNNNRTG	1 cut(s)	96
SaqAI	TTAA	1 cut(s)	186
SatI	GCNGC	4 cut(s)	72, 261, 385, 418
Sau3AI	GATC	4 cut(s)	190, 220, 232, 286
SchI	GAGTC	2 cut(s)	155, 410
ScrFI	CCNGG	1 cut(s)	130
SetI	ASST	5 cut(s)	52, 186, 341, 363, 412
SfaNI	GCATC	2 cut(s)	46, 209
Sfr274I	CTCGAG	1 cut(s)	51
SlaI	CTCGAG	1 cut(s)	51
SmiMI	CAYNNNNRTG	1 cut(s)	96
SmlI	CTYRAG	2 cut(s)	51, 194
SmoI	CTYRAG	2 cut(s)	51, 194
Sse9I	AATT	1 cut(s)	240
StyD4I	CCNGG	1 cut(s)	128
StyI	CCWWGG	2 cut(s)	255, 302
TaaI	ACNGT	1 cut(s)	279
TaqI	TCGA	2 cut(s)	52, 219
TasI	AATT	1 cut(s)	240
TfiI	GAWTC	1 cut(s)	450
Tru1I	TTAA	1 cut(s)	186
Tru9I	TTAA	1 cut(s)	186
TscAI	CASTG	2 cut(s)	123, 282
TseI	GCWGC	4 cut(s)	71, 260, 384, 417
TspDTI	ATGAA	1 cut(s)	35
TspRI	CASTG	2 cut(s)	123, 282
XhoI	CTCGAG	1 cut(s)	51
Zsp2I	ATGCAT	1 cut(s)	20

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.