Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000326.1

Orthogroup ID

OG0001230

Physical Location & Seq

Genomic Coordinates Reverse (-)

18005 .. 19200

Gene Structure 1196 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000326.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

atgaattatatgatggcgtatgggctgaagcttccctccgattattatggaaatttggacttctggaactacttctacccatccaggcagcatattttgttctccatggattgcgaagacgagacaaaaggtctaacatggattgcaatcttagcattgcataaagcactctccgaacaacctcgagatgcgttggtggttgctgcatttacccttgctgttcacaatggtggagatatgtcagaagcagtggacataaccaggactatcactaaaccacatgatggtagctttcatgaattattagaaccgaagagtgtggactctgaagcatataacaaagaggttaaggatcttgaggcatcttttaggctggcactcgatcatatgactgatgagcaaattgtctcagaggccatggcagcgtacccacaagcactgtttcctgatctggtatttataccatggggattatctttgagggtctcccagattttcaactgtgtaaaagtgggtgggaagctgggatttgtggcaaagcaaggcagcaagattgactacgagtcattagctcagggcagcctgccagttgttcggcatatttttgcaagattcgtgtttgataccatctatcctctttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004652 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006276 GO:0006378 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016740 GO:0016772 GO:0016779 GO:0031123 GO:0031124 GO:0034641 GO:0043170 GO:0043412 GO:0043631 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0070566 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PolyA_pol PolyA_pol_RNAbd

Protein Analysis

213

Amino Acids

24.02

Weight (kDa)

5.18

Isoelectric Point (pI)

40.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001230)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28090 AT1G28090 AT1G28090 AT1G28090 AT1G28090 AT3G48830 AT5G23690
fragaria_vesca	FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09270
malus_domestica	MD06G1133100.v1.1 MD14G1149300.v1.1 MD14G1149500.v1.1
prunus_persica	Prupe.5G144000_v2.0.a1 Prupe.5G144300_v2.0.a1
pyrus_communis	pycom06g12450 pycom14g12410
rosa_chinensis	RchiOBHm_Chr3g0469071 RchiOBHm_Chr7g0189011
rosa_laevigata	RLG00000004641 RLG00000024375 RLG00000024379 RLG00000024383 RLG00000024385
rosa_multiflora	Rmu_sc0000302.1_g000052 Rmu_sc0000326.1_g000001 Rmu_sc0007139.1_g000009 Rmu_sc0016080.1_g000004
rosa_roxburghii	Rroxscaffold_3G00265860
rosa_rugosa	Rorug03G0099300 Rorug06G0495400 Rorug06G0495500
rosa_samantha	Rh3AG148200 Rh3AG148500 Rh3BG171000 Rh3BG171100 Rh3BG171500 Rh7AG100100 Rh7BG102400 Rh7CG104000 Rh7DG102100
rosa_wichuraiana	Rw0G010940 Rw0G014560 Rw0G014590 Rw7G008650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	284
AclWI	GGATC	1 cut(s)	360
AcsI	RAATTY	1 cut(s)	52
AcuI	CTGAAG	2 cut(s)	47, 348
AfaI	GTAC	1 cut(s)	428
AfiI	CCNNNNNNNGG	1 cut(s)	284
AgsI	TTSAA	1 cut(s)	499
AhdI	GACNNNNNGTC	2 cut(s)	129, 562
AjnI	CCWGG	2 cut(s)	83, 260
AleI	CACNNNNGTG	1 cut(s)	228
AluBI	AGCT	4 cut(s)	31, 291, 523, 572
AluI	AGCT	4 cut(s)	31, 291, 523, 572
Alw26I	GTCTC	3 cut(s)	116, 412, 490
AlwI	GGATC	1 cut(s)	360
Ama87I	CYCGRG	1 cut(s)	183
AoxI	GGCC	1 cut(s)	414
ApeKI	GCWGC	5 cut(s)	88, 203, 422, 546, 579
ApoI	RAATTY	1 cut(s)	52
Asp700I	GAANNNNTTC	1 cut(s)	71
AvaI	CYCGRG	1 cut(s)	183
BbsI	GAAGAC	1 cut(s)	123
BbvI	GCAGC	5 cut(s)	100, 190, 434, 558, 591
BccI	CCATC	4 cut(s)	7, 88, 278, 635
BciT130I	CCWGG	2 cut(s)	85, 262
BcoDI	GTCTC	3 cut(s)	116, 412, 490
BisI	GCNGC	5 cut(s)	89, 204, 423, 547, 580
BlsI	GCNGC	5 cut(s)	90, 205, 424, 548, 581
Bme1390I	CCNGG	2 cut(s)	85, 262
BmeRI	GACNNNNNGTC	2 cut(s)	129, 562
BmeT110I	CYCGRG	1 cut(s)	183
BmrFI	CCNGG	2 cut(s)	85, 262
BmsI	GCATC	2 cut(s)	178, 371
BpiI	GAAGAC	1 cut(s)	123
Bpu10I	CCTNAGC	1 cut(s)	573
BpuEI	CTTGAG	1 cut(s)	377
BsaBI	GATNNNNATC	1 cut(s)	146
BsaI	GGTCTC	1 cut(s)	490
BsaJI	CCNNGG	3 cut(s)	105, 417, 464
Bsc4I	CCNNNNNNNGG	1 cut(s)	284
Bse1I	ACTGG	1 cut(s)	587
Bse3DI	GCAATG	1 cut(s)	155
Bse8I	GATNNNNATC	1 cut(s)	146
BseBI	CCWGG	2 cut(s)	85, 262
BseDI	CCNNGG	3 cut(s)	105, 417, 464
BseGI	GGATG	1 cut(s)	80
BseJI	GATNNNNATC	1 cut(s)	146
BseLI	CCNNNNNNNGG	1 cut(s)	284
BseMI	GCAATG	1 cut(s)	155
BseMII	CTCAG	2 cut(s)	423, 587
BseNI	ACTGG	1 cut(s)	587
BseXI	GCAGC	5 cut(s)	100, 190, 434, 558, 591
BseYI	CCCAGC	1 cut(s)	523
BshFI	GGCC	1 cut(s)	416
BsiHKCI	CYCGRG	1 cut(s)	183
BslI	CCNNNNNNNGG	1 cut(s)	284
BsmAI	GTCTC	3 cut(s)	116, 412, 490
BsnI	GGCC	1 cut(s)	416
Bso31I	GGTCTC	1 cut(s)	490
BsoBI	CYCGRG	1 cut(s)	183
Bsp143I	GATC	3 cut(s)	352, 382, 448
Bsp19I	CCATGG	3 cut(s)	105, 417, 464
BspANI	GGCC	1 cut(s)	416
BspCNI	CTCAG	2 cut(s)	422, 586
BspHI	TCATGA	1 cut(s)	295
BspPI	GGATC	1 cut(s)	360
BspTNI	GGTCTC	1 cut(s)	490
BsrDI	GCAATG	1 cut(s)	155
BsrI	ACTGG	1 cut(s)	587
BssECI	CCNNGG	3 cut(s)	105, 417, 464
BssMI	GATC	3 cut(s)	352, 382, 448
BssT1I	CCWWGG	3 cut(s)	105, 417, 464
Bst2UI	CCWGG	2 cut(s)	85, 262
Bst4CI	ACNGT	2 cut(s)	441, 503
Bst6I	CTCTTC	1 cut(s)	308
BstC8I	GCNNGC	2 cut(s)	375, 584
BstDEI	CTNAG	3 cut(s)	151, 409, 573
BstDSI	CCRYGG	3 cut(s)	105, 417, 464
BstF5I	GGATG	1 cut(s)	80
BstKTI	GATC	3 cut(s)	355, 385, 451
BstMAI	GTCTC	3 cut(s)	116, 412, 490
BstMBI	GATC	3 cut(s)	352, 382, 448
BstMWI	GCNNNNNNNGC	2 cut(s)	152, 422
BstNI	CCWGG	2 cut(s)	85, 262
BstSCI	CCNGG	2 cut(s)	83, 260
BstV1I	GCAGC	5 cut(s)	100, 190, 434, 558, 591
BstV2I	GAAGAC	1 cut(s)	123
BstX2I	RGATCY	1 cut(s)	352
BstYI	RGATCY	1 cut(s)	352
BsuRI	GGCC	1 cut(s)	416
BtgI	CCRYGG	3 cut(s)	105, 417, 464
BtsCI	GGATG	1 cut(s)	80
BtsI	GCAGTG	1 cut(s)	255
BtsIMutI	CAGTG	2 cut(s)	255, 437
Cac8I	GCNNGC	2 cut(s)	375, 584
CciI	TCATGA	1 cut(s)	295
Csp6I	GTAC	1 cut(s)	427
CviAII	CATG	6 cut(s)	106, 138, 281, 296, 418, 465
CviJI	RGCY	8 cut(s)	25, 31, 291, 373, 416, 523, 572, 582
CviKI_1	RGCY	8 cut(s)	25, 31, 291, 373, 416, 523, 572, 582
CviQI	GTAC	1 cut(s)	427
DdeI	CTNAG	3 cut(s)	151, 409, 573
DpnI	GATC	3 cut(s)	354, 384, 450
DpnII	GATC	3 cut(s)	352, 382, 448
DriI	GACNNNNNGTC	2 cut(s)	129, 562
Eam1104I	CTCTTC	1 cut(s)	308
Eam1105I	GACNNNNNGTC	2 cut(s)	129, 562
EarI	CTCTTC	1 cut(s)	308
Eco130I	CCWWGG	3 cut(s)	105, 417, 464
Eco31I	GGTCTC	1 cut(s)	490
Eco57I	CTGAAG	2 cut(s)	47, 348
Eco88I	CYCGRG	1 cut(s)	183
EcoRII	CCWGG	2 cut(s)	83, 260
EcoT14I	CCWWGG	3 cut(s)	105, 417, 464
ErhI	CCWWGG	3 cut(s)	105, 417, 464
FaeI	CATG	6 cut(s)	109, 141, 284, 299, 421, 468
FatI	CATG	6 cut(s)	105, 137, 280, 295, 417, 464
FauNDI	CATATG	1 cut(s)	387
Fnu4HI	GCNGC	5 cut(s)	89, 204, 423, 547, 580
FokI	GGATG	1 cut(s)	67
Fsp4HI	GCNGC	5 cut(s)	89, 204, 423, 547, 580
GluI	GCNGC	5 cut(s)	89, 204, 423, 547, 580
GsaI	CCCAGC	1 cut(s)	527
HaeIII	GGCC	1 cut(s)	416
Hin1II	CATG	6 cut(s)	109, 141, 284, 299, 421, 468
HindIII	AAGCTT	1 cut(s)	29
HinfI	GANTC	3 cut(s)	323, 563, 612
Hpy166II	GTNNAC	3 cut(s)	223, 253, 322
Hpy188I	TCNGA	5 cut(s)	40, 175, 244, 328, 412
Hpy188III	TCNNGA	5 cut(s)	64, 185, 296, 356, 446
Hpy8I	GTNNAC	3 cut(s)	223, 253, 322
HpyCH4III	ACNGT	2 cut(s)	441, 503
HpyCH4V	TGCA	4 cut(s)	146, 160, 206, 608
HpyF10VI	GCNNNNNNNGC	2 cut(s)	152, 422
HpyF3I	CTNAG	3 cut(s)	151, 409, 573
Hsp92II	CATG	6 cut(s)	109, 141, 284, 299, 421, 468
Kzo9I	GATC	3 cut(s)	352, 382, 448
Lsp1109I	GCAGC	5 cut(s)	100, 190, 434, 558, 591
LweI	GCATC	2 cut(s)	178, 371
MalI	GATC	3 cut(s)	354, 384, 450
MboI	GATC	3 cut(s)	352, 382, 448
MboII	GAAGA	2 cut(s)	128, 325
MflI	RGATCY	1 cut(s)	352
MluCI	AATT	4 cut(s)	4, 52, 299, 402
MlyI	GAGTC	2 cut(s)	317, 572
MnlI	CCTC	6 cut(s)	46, 192, 337, 352, 406, 474
MroXI	GAANNNNTTC	1 cut(s)	71
MseI	TTAA	1 cut(s)	348
MslI	CAYNNNNRTG	1 cut(s)	228
MspR9I	CCNGG	2 cut(s)	85, 262
MvaI	CCWGG	2 cut(s)	85, 262
MwoI	GCNNNNNNNGC	2 cut(s)	152, 422
NcoI	CCATGG	3 cut(s)	105, 417, 464
NdeI	CATATG	1 cut(s)	387
NdeII	GATC	3 cut(s)	352, 382, 448
NlaIII	CATG	6 cut(s)	109, 141, 284, 299, 421, 468
OliI	CACNNNNGTG	1 cut(s)	228
PaeR7I	CTCGAG	1 cut(s)	183
PagI	TCATGA	1 cut(s)	295
PdmI	GAANNNNTTC	1 cut(s)	71
PfeI	GAWTC	1 cut(s)	612
PflMI	CCANNNNNTGG	1 cut(s)	284
PkrI	GCNGC	5 cut(s)	90, 205, 424, 548, 581
PleI	GAGTC	2 cut(s)	317, 571
PpsI	GAGTC	2 cut(s)	317, 571
Psp6I	CCWGG	2 cut(s)	83, 260
PspFI	CCCAGC	1 cut(s)	523
PspGI	CCWGG	2 cut(s)	83, 260
PsrI	GAACNNNNNNTAC	2 cut(s)	59, 91
PsuI	RGATCY	1 cut(s)	352
RsaI	GTAC	1 cut(s)	428
RsaNI	GTAC	1 cut(s)	427
RseI	CAYNNNNRTG	1 cut(s)	228
SaqAI	TTAA	1 cut(s)	348
SatI	GCNGC	5 cut(s)	89, 204, 423, 547, 580
Sau3AI	GATC	3 cut(s)	352, 382, 448
SchI	GAGTC	2 cut(s)	317, 572
ScrFI	CCNGG	2 cut(s)	85, 262
SetI	ASST	7 cut(s)	33, 133, 184, 293, 348, 525, 574
SfaNI	GCATC	2 cut(s)	178, 371
Sfr274I	CTCGAG	1 cut(s)	183
SlaI	CTCGAG	1 cut(s)	183
SmiMI	CAYNNNNRTG	1 cut(s)	228
SmlI	CTYRAG	2 cut(s)	183, 356
SmoI	CTYRAG	2 cut(s)	183, 356
Sse9I	AATT	4 cut(s)	4, 52, 299, 402
StyD4I	CCNGG	2 cut(s)	83, 260
StyI	CCWWGG	3 cut(s)	105, 417, 464
TaaI	ACNGT	2 cut(s)	441, 503
TaqI	TCGA	2 cut(s)	184, 381
TasI	AATT	4 cut(s)	4, 52, 299, 402
TfiI	GAWTC	1 cut(s)	612
Tru1I	TTAA	1 cut(s)	348
Tru9I	TTAA	1 cut(s)	348
TscAI	CASTG	2 cut(s)	255, 444
TseI	GCWGC	5 cut(s)	88, 203, 422, 546, 579
TspDTI	ATGAA	3 cut(s)	17, 284, 312
TspRI	CASTG	2 cut(s)	255, 444
Van91I	CCANNNNNTGG	1 cut(s)	284
XapI	RAATTY	1 cut(s)	52
XhoI	CTCGAG	1 cut(s)	183
XmnI	GAANNNNTTC	1 cut(s)	71

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.