Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0001230

Physical Location & Seq

Genomic Coordinates Reverse (-)

13295583 .. 13297362

Gene Structure 1780 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G144000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGTTTGTGGAGAAACTAAATCAGATTCTGCCTCGCATCCTACGTGCAATAAGAATTGCTGCCCGTTTAGGCTTTCGTATTTCCAAGGAAACAGCTCATTCTGTTAAAAATTTATCTTACTCAATTCTTAGGCTTGATAAGGGAAGGCTCCTCATGGAAATGAACTACATGCTAGCTTATGGTTCTGCTGAAGCTTCTTTGAGGTTATTATGGAAATTTGGACTTCTAGAACTACTTCTACCTATTCAGGCAGCATATTTTGTTAGCCATGGTTTTCGAAGACGTGACAAAAGGACTAATATGCTTTTGGTAATTATCATTACACACTTGTTATATGCTTATTCAGTGCTTGATTATATCGTGAAGAGGTCCCTTCTTTCTAACTTGGATAAACTTCTTTCACCTGACAAGCCATGCCACAGTAGCTTATGGGTTGCGATCTTAGCATTCCACAAAGCACTGTCCGAACAACCTAGGGATCCATTGGTGGTTGCTGCATTTAGCCTTGCAATTCACAATGGTGGAGATATGCTAGAAGCAGTAAACATTGCTAGGAGAATCACTAAACTACACGATGTTTGCTTTAATGAATTATCAGAAACTCAGGATTTGAACCCTCGAGCATTGAAAGATGAGGTTGTGAATCTTGCAACATCTCTTAAGCGTGCGCTAAACCATATGACTGATGAGCAAATAGTCTCTGTGGCGATGGCAGGGTACCCACAAGCACCATATTCTGATCTGGTATTTATCCCATGGGGGTTATCTCTGAGGGTCAGCAGGGTTTTTAGTTGCGTAACGTCTGGTGCAGAGAGGGGATTTGTGCCAAAGCAAGGCAGCAAGATTGATTATGAGTCATTGGCTGTGGGAAACCTGCCGGAAGTTCGGCATATTTTTGCAAGAGTTGTGTTTGATACCATATATCCGCTTATTCTAAATCGTGACAATTTTGAAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004652 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006276 GO:0006378 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016740 GO:0016772 GO:0016779 GO:0031123 GO:0031124 GO:0034641 GO:0043170 GO:0043412 GO:0043631 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0070566 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PolyA_pol PolyA_pol_RNAbd

Protein Analysis

320

Amino Acids

36.15

Weight (kDa)

9.45

Isoelectric Point (pI)

38.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001230)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28090 AT1G28090 AT1G28090 AT1G28090 AT1G28090 AT3G48830 AT5G23690
fragaria_vesca	FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09270
malus_domestica	MD06G1133100.v1.1 MD14G1149300.v1.1 MD14G1149500.v1.1
prunus_persica	Prupe.5G144000_v2.0.a1 Prupe.5G144300_v2.0.a1
pyrus_communis	pycom06g12450 pycom14g12410
rosa_chinensis	RchiOBHm_Chr3g0469071 RchiOBHm_Chr7g0189011
rosa_laevigata	RLG00000004641 RLG00000024375 RLG00000024379 RLG00000024383 RLG00000024385
rosa_multiflora	Rmu_sc0000302.1_g000052 Rmu_sc0000326.1_g000001 Rmu_sc0007139.1_g000009 Rmu_sc0016080.1_g000004
rosa_roxburghii	Rroxscaffold_3G00265860
rosa_rugosa	Rorug03G0099300 Rorug06G0495400 Rorug06G0495500
rosa_samantha	Rh3AG148200 Rh3AG148500 Rh3BG171000 Rh3BG171100 Rh3BG171500 Rh7AG100100 Rh7BG102400 Rh7CG104000 Rh7DG102100
rosa_wichuraiana	Rw0G010940 Rw0G014560 Rw0G014590 Rw7G008650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	882
Acc65I	GGTACC	1 cut(s)	717
AccB1I	GGYRCC	1 cut(s)	717
AciI	CCGC	1 cut(s)	926
AclWI	GGATC	2 cut(s)	473, 486
AcsI	RAATTY	2 cut(s)	109, 215
AcuI	CTGAAG	1 cut(s)	210
AfaI	GTAC	1 cut(s)	719
AfiI	CCNNNNNNNGG	1 cut(s)	833
AflII	CTTAAG	1 cut(s)	659
AgsI	TTSAA	3 cut(s)	613, 628, 953
AjiI	CACGTC	1 cut(s)	284
AleI	CACNNNNGTG	1 cut(s)	519
AluBI	AGCT	4 cut(s)	95, 176, 194, 426
AluI	AGCT	4 cut(s)	95, 176, 194, 426
Alw26I	GTCTC	1 cut(s)	703
AlwI	GGATC	2 cut(s)	473, 486
AlwNI	CAGNNNCTG	1 cut(s)	28
Ama87I	CYCGRG	1 cut(s)	618
ApeKI	GCWGC	4 cut(s)	59, 251, 494, 837
ApoI	RAATTY	2 cut(s)	109, 215
Asp700I	GAANNNNTTC	1 cut(s)	234
Asp718I	GGTACC	1 cut(s)	717
AspA2I	CCTAGG	1 cut(s)	473
AspLEI	GCGC	1 cut(s)	670
AspS9I	GGNCC	1 cut(s)	369
AsuHPI	GGTGA	1 cut(s)	393
AsuII	TTCGAA	1 cut(s)	277
AsuNHI	GCTAGC	1 cut(s)	172
AvaI	CYCGRG	1 cut(s)	618
AvaII	GGWCC	1 cut(s)	369
AvrII	CCTAGG	1 cut(s)	473
BamHI	GGATCC	1 cut(s)	478
BanI	GGYRCC	1 cut(s)	717
BbsI	GAAGAC	1 cut(s)	286
BbvI	GCAGC	4 cut(s)	46, 263, 481, 849
BccI	CCATC	1 cut(s)	703
BcoDI	GTCTC	1 cut(s)	703
BfaI	CTAG	5 cut(s)	173, 227, 474, 533, 552
BfrI	CTTAAG	1 cut(s)	659
BfuAI	ACCTGC	1 cut(s)	882
BisI	GCNGC	4 cut(s)	60, 252, 495, 838
BlnI	CCTAGG	1 cut(s)	473
BlsI	GCNGC	4 cut(s)	61, 253, 496, 839
Bme18I	GGWCC	1 cut(s)	369
BmeT110I	CYCGRG	1 cut(s)	618
BmgBI	CACGTC	1 cut(s)	284
BmgT120I	GGNCC	1 cut(s)	369
BmiI	GGNNCC	4 cut(s)	149, 371, 480, 719
BmsI	GCATC	1 cut(s)	45
BmtI	GCTAGC	1 cut(s)	176
BpiI	GAAGAC	1 cut(s)	286
Bpu14I	TTCGAA	1 cut(s)	277
BsaAI	YACGTR	1 cut(s)	44
BsaJI	CCNNGG	4 cut(s)	84, 268, 473, 755
Bsc4I	CCNNNNNNNGG	1 cut(s)	833
Bse3DI	GCAATG	1 cut(s)	546
BseDI	CCNNGG	4 cut(s)	84, 268, 473, 755
BseGI	GGATG	1 cut(s)	36
BseLI	CCNNNNNNNGG	1 cut(s)	833
BseMI	GCAATG	1 cut(s)	546
BseMII	CTCAG	2 cut(s)	617, 761
BseRI	GAGGAG	1 cut(s)	140
BseXI	GCAGC	4 cut(s)	46, 263, 481, 849
BsgI	GTGCAG	1 cut(s)	828
BshNI	GGYRCC	1 cut(s)	717
BsiHKCI	CYCGRG	1 cut(s)	618
BsiSI	CCGG	1 cut(s)	878
BslFI	GGGAC	1 cut(s)	355
BslI	CCNNNNNNNGG	1 cut(s)	833
BsmAI	GTCTC	1 cut(s)	703
BsmFI	GGGAC	1 cut(s)	355
BsmI	GAATGC	1 cut(s)	446
BsoBI	CYCGRG	1 cut(s)	618
Bsp119I	TTCGAA	1 cut(s)	277
Bsp143I	GATC	3 cut(s)	438, 478, 739
Bsp19I	CCATGG	2 cut(s)	268, 755
BspACI	CCGC	1 cut(s)	926
BspCNI	CTCAG	2 cut(s)	616, 762
BspLI	GGNNCC	4 cut(s)	149, 371, 480, 719
BspMI	ACCTGC	1 cut(s)	882
BspOI	GCTAGC	1 cut(s)	176
BspPI	GGATC	2 cut(s)	473, 486
BspT104I	TTCGAA	1 cut(s)	277
BspT107I	GGYRCC	1 cut(s)	717
BspTI	CTTAAG	1 cut(s)	659
BsrDI	GCAATG	1 cut(s)	546
BssECI	CCNNGG	4 cut(s)	84, 268, 473, 755
BssMI	GATC	3 cut(s)	438, 478, 739
BssT1I	CCWWGG	4 cut(s)	84, 268, 473, 755
Bst4CI	ACNGT	2 cut(s)	422, 462
Bst6I	CTCTTC	1 cut(s)	359
BstAFI	CTTAAG	1 cut(s)	659
BstBAI	YACGTR	1 cut(s)	44
BstBI	TTCGAA	1 cut(s)	277
BstC8I	GCNNGC	2 cut(s)	174, 666
BstDEI	CTNAG	4 cut(s)	128, 442, 603, 770
BstDSI	CCRYGG	2 cut(s)	268, 755
BstF5I	GGATG	1 cut(s)	36
BstHHI	GCGC	1 cut(s)	670
BstKTI	GATC	3 cut(s)	441, 481, 742
BstMAI	GTCTC	1 cut(s)	703
BstMBI	GATC	3 cut(s)	438, 478, 739
BstMWI	GCNNNNNNNGC	2 cut(s)	423, 443
BstNSI	RCATGY	1 cut(s)	172
BstV1I	GCAGC	4 cut(s)	46, 263, 481, 849
BstV2I	GAAGAC	1 cut(s)	286
BstX2I	RGATCY	1 cut(s)	478
BstYI	RGATCY	1 cut(s)	478
BtgI	CCRYGG	2 cut(s)	268, 755
BtgZI	GCGATG	1 cut(s)	722
BtrI	CACGTC	1 cut(s)	284
BtsCI	GGATG	1 cut(s)	36
BtsIMutI	CAGTG	2 cut(s)	351, 458
BveI	ACCTGC	1 cut(s)	882
Cac8I	GCNNGC	2 cut(s)	174, 666
CaiI	CAGNNNCTG	1 cut(s)	28
CfoI	GCGC	1 cut(s)	670
Cfr13I	GGNCC	1 cut(s)	369
Csp6I	GTAC	1 cut(s)	718
CviAII	CATG	6 cut(s)	154, 169, 269, 414, 756, 957
CviQI	GTAC	1 cut(s)	718
DdeI	CTNAG	4 cut(s)	128, 442, 603, 770
DpnI	GATC	3 cut(s)	440, 480, 741
DpnII	GATC	3 cut(s)	438, 478, 739
Eam1104I	CTCTTC	1 cut(s)	359
EarI	CTCTTC	1 cut(s)	359
Eco130I	CCWWGG	4 cut(s)	84, 268, 473, 755
Eco47I	GGWCC	1 cut(s)	369
Eco57I	CTGAAG	1 cut(s)	210
Eco88I	CYCGRG	1 cut(s)	618
EcoO109I	RGGNCCY	1 cut(s)	369
EcoT14I	CCWWGG	4 cut(s)	84, 268, 473, 755
ErhI	CCWWGG	4 cut(s)	84, 268, 473, 755
FaeI	CATG	6 cut(s)	157, 172, 272, 417, 759, 960
FaqI	GGGAC	1 cut(s)	355
FatI	CATG	6 cut(s)	153, 168, 268, 413, 755, 956
FauNDI	CATATG	1 cut(s)	678
Fnu4HI	GCNGC	4 cut(s)	60, 252, 495, 838
FokI	GGATG	1 cut(s)	23
Fsp4HI	GCNGC	4 cut(s)	60, 252, 495, 838
FspBI	CTAG	5 cut(s)	173, 227, 474, 533, 552
GlaI	GCGC	1 cut(s)	669
GluI	GCNGC	4 cut(s)	60, 252, 495, 838
HapII	CCGG	1 cut(s)	878
HhaI	GCGC	1 cut(s)	670
Hin1II	CATG	6 cut(s)	157, 172, 272, 417, 759, 960
Hin6I	GCGC	1 cut(s)	668
HinP1I	GCGC	1 cut(s)	668
HindIII	AAGCTT	1 cut(s)	192
HinfI	GANTC	4 cut(s)	25, 558, 643, 854
HpaII	CCGG	1 cut(s)	878
HphI	GGTGA	1 cut(s)	393
Hpy166II	GTNNAC	1 cut(s)	544
Hpy188I	TCNGA	5 cut(s)	24, 466, 598, 739, 771
Hpy188III	TCNNGA	4 cut(s)	227, 361, 605, 941
Hpy8I	GTNNAC	1 cut(s)	544
HpyAV	CCTTC	2 cut(s)	138, 383
HpyCH4III	ACNGT	2 cut(s)	422, 462
HpyCH4IV	ACGT	3 cut(s)	43, 283, 800
HpyCH4V	TGCA	6 cut(s)	47, 497, 509, 650, 809, 899
HpyF10VI	GCNNNNNNNGC	2 cut(s)	423, 443
HpyF3I	CTNAG	4 cut(s)	128, 442, 603, 770
HpySE526I	ACGT	3 cut(s)	43, 283, 800
Hsp92II	CATG	6 cut(s)	157, 172, 272, 417, 759, 960
HspAI	GCGC	1 cut(s)	668
KpnI	GGTACC	1 cut(s)	721
Kzo9I	GATC	3 cut(s)	438, 478, 739
LmnI	GCTCC	1 cut(s)	153
LpnPI	CCDG	9 cut(s)	233, 417, 590, 699, 728, 766, 789, 887, 891
Lsp1109I	GCAGC	4 cut(s)	46, 263, 481, 849
LweI	GCATC	1 cut(s)	45
MaeI	CTAG	5 cut(s)	173, 227, 474, 533, 552
MaeII	ACGT	3 cut(s)	43, 283, 800
MaeIII	GTNAC	3 cut(s)	284, 796, 941
MalI	GATC	3 cut(s)	440, 480, 741
MboI	GATC	3 cut(s)	438, 478, 739
MboII	GAAGA	2 cut(s)	291, 376
MflI	RGATCY	1 cut(s)	478
MluCI	AATT	8 cut(s)	54, 109, 123, 215, 312, 510, 590, 946
MlyI	GAGTC	1 cut(s)	863
MnlI	CCTC	8 cut(s)	42, 161, 195, 360, 627, 628, 765, 807
MroXI	GAANNNNTTC	1 cut(s)	234
MseI	TTAA	3 cut(s)	105, 585, 660
MslI	CAYNNNNRTG	2 cut(s)	158, 519
MspCI	CTTAAG	1 cut(s)	659
MspI	CCGG	1 cut(s)	878
Mva1269I	GAATGC	1 cut(s)	446
MwoI	GCNNNNNNNGC	2 cut(s)	423, 443
NcoI	CCATGG	2 cut(s)	268, 755
NdeI	CATATG	1 cut(s)	678
NdeII	GATC	3 cut(s)	438, 478, 739
NheI	GCTAGC	1 cut(s)	172
NlaIII	CATG	6 cut(s)	157, 172, 272, 417, 759, 960
NlaIV	GGNNCC	4 cut(s)	149, 371, 480, 719
NmuCI	GTSAC	2 cut(s)	284, 941
NspI	RCATGY	1 cut(s)	172
NspV	TTCGAA	1 cut(s)	277
OliI	CACNNNNGTG	1 cut(s)	519
PaeR7I	CTCGAG	1 cut(s)	618
PcsI	WCGNNNNNNNCGW	1 cut(s)	40
PctI	GAATGC	1 cut(s)	446
PdmI	GAANNNNTTC	1 cut(s)	234
PfeI	GAWTC	3 cut(s)	25, 558, 643
PkrI	GCNGC	4 cut(s)	61, 253, 496, 839
PleI	GAGTC	1 cut(s)	862
PpsI	GAGTC	1 cut(s)	862
Ppu21I	YACGTR	1 cut(s)	44
PpuMI	RGGWCCY	1 cut(s)	369
Psp5II	RGGWCCY	1 cut(s)	369
PspN4I	GGNNCC	4 cut(s)	149, 371, 480, 719
PspPI	GGNCC	1 cut(s)	369
PspPPI	RGGWCCY	1 cut(s)	369
PspXI	VCTCGAGB	1 cut(s)	618
PsrI	GAACNNNNNNTAC	2 cut(s)	222, 254
PstNI	CAGNNNCTG	1 cut(s)	28
PsuI	RGATCY	1 cut(s)	478
RsaI	GTAC	1 cut(s)	719
RsaNI	GTAC	1 cut(s)	718
RseI	CAYNNNNRTG	2 cut(s)	158, 519
SaqAI	TTAA	3 cut(s)	105, 585, 660
SatI	GCNGC	4 cut(s)	60, 252, 495, 838
Sau3AI	GATC	3 cut(s)	438, 478, 739
Sau96I	GGNCC	1 cut(s)	369
SchI	GAGTC	1 cut(s)	863
SfaNI	GCATC	1 cut(s)	45
Sfr274I	CTCGAG	1 cut(s)	618
SfuI	TTCGAA	1 cut(s)	277
SinI	GGWCC	1 cut(s)	369
SlaI	CTCGAG	1 cut(s)	618
SmiMI	CAYNNNNRTG	2 cut(s)	158, 519
SmlI	CTYRAG	2 cut(s)	618, 659
SmoI	CTYRAG	2 cut(s)	618, 659
Sse9I	AATT	8 cut(s)	54, 109, 123, 215, 312, 510, 590, 946
SsiI	CCGC	1 cut(s)	926
SspMI	CTAG	5 cut(s)	173, 227, 474, 533, 552
StyI	CCWWGG	4 cut(s)	84, 268, 473, 755
TaaI	ACNGT	2 cut(s)	422, 462
TaiI	ACGT	3 cut(s)	46, 286, 803
TaqI	TCGA	2 cut(s)	277, 619
TasI	AATT	8 cut(s)	54, 109, 123, 215, 312, 510, 590, 946
TfiI	GAWTC	3 cut(s)	25, 558, 643
Tru1I	TTAA	3 cut(s)	105, 585, 660
Tru9I	TTAA	3 cut(s)	105, 585, 660
TscAI	CASTG	2 cut(s)	351, 465
TseFI	GTSAC	2 cut(s)	284, 941
TseI	GCWGC	4 cut(s)	59, 251, 494, 837
Tsp45I	GTSAC	2 cut(s)	284, 941
TspDTI	ATGAA	2 cut(s)	176, 603
TspRI	CASTG	2 cut(s)	351, 465
Vha464I	CTTAAG	1 cut(s)	659
VpaK11BI	GGWCC	1 cut(s)	369
XapI	RAATTY	2 cut(s)	109, 215
XbaI	TCTAGA	1 cut(s)	226
XceI	RCATGY	1 cut(s)	172
XhoI	CTCGAG	1 cut(s)	618
XmaJI	CCTAGG	1 cut(s)	473
XmnI	GAANNNNTTC	1 cut(s)	234
XspI	CTAG	5 cut(s)	173, 227, 474, 533, 552

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.