Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0001230

Physical Location & Seq

Genomic Coordinates Forward (+)

13084667 .. 13085296

Gene Structure 630 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG148500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGGCCAGACTTCAATGCATGAAGTTTCCAGATATTATCTCCGAACAACCTCGAGATGCGTTGGTGGTTGCTGCATTTACCCTTTCTGTTCACAATGGTGGAGATATGTCAGAAGCAGTGGACATAACCAGGACTATCACTAAACCACATGACGGTAGCTTTCATGAATTATTAGAACCGAAGAGTTTGGACTCTGAAGCATATAACAAAGAGGTTAAGGATCTTGAGGCATCTTTTAGGCTGGCACTCGATCATATGACTGATCAGCAAATTGTCTCAGAGGCCATGGCAGCGTACCCACAAGCACTGTTTCCTGATCTGGTATTTATACCATGGGGATTATCTTTGAGGGTCTCCCAGATTTTCAGCTGTGTAAAAGTGGGTGGGAAGCTGGGATTTGTGGCAAAGCAAGGCAGCAAGATTGACTACGAGTCATTAGCTCAGGGCAGCCTGCCAGATGTTCGGCATATTTTTGCAAGATTCGTGTTTGATACCATCTATCCTCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004652 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006276 GO:0006378 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016740 GO:0016772 GO:0016779 GO:0031123 GO:0031124 GO:0034641 GO:0043170 GO:0043412 GO:0043631 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0070566 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PolyA_pol PolyA_pol_RNAbd

Protein Analysis

169

Amino Acids

18.81

Weight (kDa)

5.29

Isoelectric Point (pI)

38.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001230)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28090 AT1G28090 AT1G28090 AT1G28090 AT1G28090 AT3G48830 AT5G23690
fragaria_vesca	FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09270
malus_domestica	MD06G1133100.v1.1 MD14G1149300.v1.1 MD14G1149500.v1.1
prunus_persica	Prupe.5G144000_v2.0.a1 Prupe.5G144300_v2.0.a1
pyrus_communis	pycom06g12450 pycom14g12410
rosa_chinensis	RchiOBHm_Chr3g0469071 RchiOBHm_Chr7g0189011
rosa_laevigata	RLG00000004641 RLG00000024375 RLG00000024379 RLG00000024383 RLG00000024385
rosa_multiflora	Rmu_sc0000302.1_g000052 Rmu_sc0000326.1_g000001 Rmu_sc0007139.1_g000009 Rmu_sc0016080.1_g000004
rosa_roxburghii	Rroxscaffold_3G00265860
rosa_rugosa	Rorug03G0099300 Rorug06G0495400 Rorug06G0495500
rosa_samantha	Rh3AG148200 Rh3AG148500 Rh3BG171000 Rh3BG171100 Rh3BG171500 Rh7AG100100 Rh7BG102400 Rh7CG104000 Rh7DG102100
rosa_wichuraiana	Rw0G010940 Rw0G014560 Rw0G014590 Rw7G008650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	228
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	216
AfaI	GTAC	1 cut(s)	296
AfiI	CCNNNNNNNGG	1 cut(s)	152
AgsI	TTSAA	1 cut(s)	14
AhdI	GACNNNNNGTC	1 cut(s)	430
AjnI	CCWGG	1 cut(s)	128
AleI	CACNNNNGTG	1 cut(s)	96
AluBI	AGCT	4 cut(s)	159, 369, 391, 440
AluI	AGCT	4 cut(s)	159, 369, 391, 440
Alw26I	GTCTC	2 cut(s)	280, 358
AlwI	GGATC	1 cut(s)	228
Ama87I	CYCGRG	1 cut(s)	51
AoxI	GGCC	2 cut(s)	3, 282
ApeKI	GCWGC	4 cut(s)	71, 290, 414, 447
AvaI	CYCGRG	1 cut(s)	51
BalI	TGGCCA	1 cut(s)	5
BbvI	GCAGC	4 cut(s)	58, 302, 426, 459
BccI	CCATC	1 cut(s)	503
BciT130I	CCWGG	1 cut(s)	130
BclI	TGATCA	1 cut(s)	262
BcoDI	GTCTC	2 cut(s)	280, 358
BisI	GCNGC	4 cut(s)	72, 291, 415, 448
BlsI	GCNGC	4 cut(s)	73, 292, 416, 449
Bme1390I	CCNGG	1 cut(s)	130
BmeRI	GACNNNNNGTC	1 cut(s)	430
BmeT110I	CYCGRG	1 cut(s)	51
BmrFI	CCNGG	1 cut(s)	130
BmsI	GCATC	2 cut(s)	46, 239
Bpu10I	CCTNAGC	1 cut(s)	441
BpuEI	CTTGAG	1 cut(s)	245
BsaI	GGTCTC	1 cut(s)	358
BsaJI	CCNNGG	2 cut(s)	285, 332
Bsc4I	CCNNNNNNNGG	1 cut(s)	152
BseBI	CCWGG	1 cut(s)	130
BseDI	CCNNGG	2 cut(s)	285, 332
BseLI	CCNNNNNNNGG	1 cut(s)	152
BseMII	CTCAG	2 cut(s)	291, 455
BseXI	GCAGC	4 cut(s)	58, 302, 426, 459
BseYI	CCCAGC	1 cut(s)	391
BshFI	GGCC	2 cut(s)	5, 284
BsiHKCI	CYCGRG	1 cut(s)	51
BslI	CCNNNNNNNGG	1 cut(s)	152
BsmAI	GTCTC	2 cut(s)	280, 358
BsnI	GGCC	2 cut(s)	5, 284
Bso31I	GGTCTC	1 cut(s)	358
BsoBI	CYCGRG	1 cut(s)	51
Bsp143I	GATC	4 cut(s)	220, 250, 262, 316
Bsp19I	CCATGG	2 cut(s)	285, 332
BspANI	GGCC	2 cut(s)	5, 284
BspCNI	CTCAG	2 cut(s)	290, 454
BspHI	TCATGA	1 cut(s)	163
BspPI	GGATC	1 cut(s)	228
BspTNI	GGTCTC	1 cut(s)	358
BssECI	CCNNGG	2 cut(s)	285, 332
BssMI	GATC	4 cut(s)	220, 250, 262, 316
BssT1I	CCWWGG	2 cut(s)	285, 332
Bst2UI	CCWGG	1 cut(s)	130
Bst4CI	ACNGT	2 cut(s)	155, 309
Bst6I	CTCTTC	1 cut(s)	176
BstC8I	GCNNGC	2 cut(s)	243, 452
BstDEI	CTNAG	2 cut(s)	277, 441
BstDSI	CCRYGG	2 cut(s)	285, 332
BstKTI	GATC	4 cut(s)	223, 253, 265, 319
BstMAI	GTCTC	2 cut(s)	280, 358
BstMBI	GATC	4 cut(s)	220, 250, 262, 316
BstMWI	GCNNNNNNNGC	1 cut(s)	290
BstNI	CCWGG	1 cut(s)	130
BstSCI	CCNGG	1 cut(s)	128
BstV1I	GCAGC	4 cut(s)	58, 302, 426, 459
BstX2I	RGATCY	1 cut(s)	220
BstYI	RGATCY	1 cut(s)	220
BsuRI	GGCC	2 cut(s)	5, 284
BtgI	CCRYGG	2 cut(s)	285, 332
BtsI	GCAGTG	1 cut(s)	123
BtsIMutI	CAGTG	2 cut(s)	123, 305
Cac8I	GCNNGC	2 cut(s)	243, 452
CciI	TCATGA	1 cut(s)	163
Csp6I	GTAC	1 cut(s)	295
CviAII	CATG	5 cut(s)	19, 149, 164, 286, 333
CviJI	RGCY	8 cut(s)	5, 159, 241, 284, 369, 391, 440, 450
CviKI_1	RGCY	8 cut(s)	5, 159, 241, 284, 369, 391, 440, 450
CviQI	GTAC	1 cut(s)	295
DdeI	CTNAG	2 cut(s)	277, 441
DpnI	GATC	4 cut(s)	222, 252, 264, 318
DpnII	GATC	4 cut(s)	220, 250, 262, 316
DriI	GACNNNNNGTC	1 cut(s)	430
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	176
Eam1105I	GACNNNNNGTC	1 cut(s)	430
EarI	CTCTTC	1 cut(s)	176
Eco130I	CCWWGG	2 cut(s)	285, 332
Eco31I	GGTCTC	1 cut(s)	358
Eco57I	CTGAAG	1 cut(s)	216
Eco88I	CYCGRG	1 cut(s)	51
EcoRII	CCWGG	1 cut(s)	128
EcoT14I	CCWWGG	2 cut(s)	285, 332
EcoT22I	ATGCAT	1 cut(s)	20
ErhI	CCWWGG	2 cut(s)	285, 332
FaeI	CATG	5 cut(s)	22, 152, 167, 289, 336
FatI	CATG	5 cut(s)	18, 148, 163, 285, 332
FauNDI	CATATG	1 cut(s)	255
FbaI	TGATCA	1 cut(s)	262
Fnu4HI	GCNGC	4 cut(s)	72, 291, 415, 448
Fsp4HI	GCNGC	4 cut(s)	72, 291, 415, 448
GluI	GCNGC	4 cut(s)	72, 291, 415, 448
GsaI	CCCAGC	1 cut(s)	395
HaeIII	GGCC	2 cut(s)	5, 284
Hin1II	CATG	5 cut(s)	22, 152, 167, 289, 336
HinfI	GANTC	3 cut(s)	191, 431, 480
Hpy166II	GTNNAC	2 cut(s)	91, 121
Hpy188I	TCNGA	4 cut(s)	43, 112, 196, 280
Hpy188III	TCNNGA	5 cut(s)	29, 53, 164, 224, 314
Hpy8I	GTNNAC	2 cut(s)	91, 121
HpyCH4III	ACNGT	2 cut(s)	155, 309
HpyCH4V	TGCA	3 cut(s)	18, 74, 476
HpyF10VI	GCNNNNNNNGC	1 cut(s)	290
HpyF3I	CTNAG	2 cut(s)	277, 441
Hsp92II	CATG	5 cut(s)	22, 152, 167, 289, 336
Ksp22I	TGATCA	1 cut(s)	262
Kzo9I	GATC	4 cut(s)	220, 250, 262, 316
Lsp1109I	GCAGC	4 cut(s)	58, 302, 426, 459
LweI	GCATC	2 cut(s)	46, 239
MalI	GATC	4 cut(s)	222, 252, 264, 318
MboI	GATC	4 cut(s)	220, 250, 262, 316
MboII	GAAGA	1 cut(s)	193
MflI	RGATCY	1 cut(s)	220
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	167, 270
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	185, 440
MnlI	CCTC	5 cut(s)	60, 205, 220, 274, 342
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	1 cut(s)	20
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	216
MslI	CAYNNNNRTG	1 cut(s)	96
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	369
MspR9I	CCNGG	1 cut(s)	130
MvaI	CCWGG	1 cut(s)	130
MwoI	GCNNNNNNNGC	1 cut(s)	290
NcoI	CCATGG	2 cut(s)	285, 332
NdeI	CATATG	1 cut(s)	255
NdeII	GATC	4 cut(s)	220, 250, 262, 316
NlaIII	CATG	5 cut(s)	22, 152, 167, 289, 336
NsiI	ATGCAT	1 cut(s)	20
OliI	CACNNNNGTG	1 cut(s)	96
PaeR7I	CTCGAG	1 cut(s)	51
PagI	TCATGA	1 cut(s)	163
PfeI	GAWTC	1 cut(s)	480
PkrI	GCNGC	4 cut(s)	73, 292, 416, 449
PleI	GAGTC	2 cut(s)	185, 439
PpsI	GAGTC	2 cut(s)	185, 439
Psp6I	CCWGG	1 cut(s)	128
PspFI	CCCAGC	1 cut(s)	391
PspGI	CCWGG	1 cut(s)	128
PsuI	RGATCY	1 cut(s)	220
PvuII	CAGCTG	1 cut(s)	369
RsaI	GTAC	1 cut(s)	296
RsaNI	GTAC	1 cut(s)	295
RseI	CAYNNNNRTG	1 cut(s)	96
SaqAI	TTAA	1 cut(s)	216
SatI	GCNGC	4 cut(s)	72, 291, 415, 448
Sau3AI	GATC	4 cut(s)	220, 250, 262, 316
SchI	GAGTC	2 cut(s)	185, 440
ScrFI	CCNGG	1 cut(s)	130
SetI	ASST	6 cut(s)	52, 161, 216, 371, 393, 442
SfaNI	GCATC	2 cut(s)	46, 239
Sfr274I	CTCGAG	1 cut(s)	51
SlaI	CTCGAG	1 cut(s)	51
SmiMI	CAYNNNNRTG	1 cut(s)	96
SmlI	CTYRAG	2 cut(s)	51, 224
SmoI	CTYRAG	2 cut(s)	51, 224
Sse9I	AATT	2 cut(s)	167, 270
StyD4I	CCNGG	1 cut(s)	128
StyI	CCWWGG	2 cut(s)	285, 332
TaaI	ACNGT	2 cut(s)	155, 309
TaqI	TCGA	2 cut(s)	52, 249
TasI	AATT	2 cut(s)	167, 270
TfiI	GAWTC	1 cut(s)	480
Tru1I	TTAA	1 cut(s)	216
Tru9I	TTAA	1 cut(s)	216
TscAI	CASTG	2 cut(s)	123, 312
TseI	GCWGC	4 cut(s)	71, 290, 414, 447
TspDTI	ATGAA	3 cut(s)	35, 152, 180
TspRI	CASTG	2 cut(s)	123, 312
XhoI	CTCGAG	1 cut(s)	51
Zsp2I	ATGCAT	1 cut(s)	20

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.