Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0001230

Physical Location & Seq

Genomic Coordinates Forward (+)

14650346 .. 14650534

Gene Structure 189 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG171000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 189 bp

ATGGCCAGACTTCAATGCATGAAGTTTCCAGATATTATCTCCGAACAACCTCGAGATGCGTTGGTGGTTGCTGCATTTACCCTTTCTGTTCACAATGGTGGAGATATGTCAGAAGCAGTGGACATAACCAGGACTATCACTAAACCACATGACGGTAGCTTTCATGAATTATTAGAACCGAAGAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004652 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006276 GO:0006378 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016740 GO:0016772 GO:0016779 GO:0031123 GO:0031124 GO:0034641 GO:0043170 GO:0043412 GO:0043631 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0070566 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PolyA_pol PolyA_pol_RNAbd

Protein Analysis

62

Amino Acids

6.85

Weight (kDa)

5.39

Isoelectric Point (pI)

44.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001230)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28090 AT1G28090 AT1G28090 AT1G28090 AT1G28090 AT3G48830 AT5G23690
fragaria_vesca	FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09270
malus_domestica	MD06G1133100.v1.1 MD14G1149300.v1.1 MD14G1149500.v1.1
prunus_persica	Prupe.5G144000_v2.0.a1 Prupe.5G144300_v2.0.a1
pyrus_communis	pycom06g12450 pycom14g12410
rosa_chinensis	RchiOBHm_Chr3g0469071 RchiOBHm_Chr7g0189011
rosa_laevigata	RLG00000004641 RLG00000024375 RLG00000024379 RLG00000024383 RLG00000024385
rosa_multiflora	Rmu_sc0000302.1_g000052 Rmu_sc0000326.1_g000001 Rmu_sc0007139.1_g000009 Rmu_sc0016080.1_g000004
rosa_roxburghii	Rroxscaffold_3G00265860
rosa_rugosa	Rorug03G0099300 Rorug06G0495400 Rorug06G0495500
rosa_samantha	Rh3AG148200 Rh3AG148500 Rh3BG171000 Rh3BG171100 Rh3BG171500 Rh7AG100100 Rh7BG102400 Rh7CG104000 Rh7DG102100
rosa_wichuraiana	Rw0G010940 Rw0G014560 Rw0G014590 Rw7G008650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	3
AfiI	CCNNNNNNNGG	1 cut(s)	152
AgsI	TTSAA	1 cut(s)	14
AjnI	CCWGG	1 cut(s)	128
AleI	CACNNNNGTG	1 cut(s)	96
AluBI	AGCT	1 cut(s)	159
AluI	AGCT	1 cut(s)	159
Ama87I	CYCGRG	1 cut(s)	51
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	71
AvaI	CYCGRG	1 cut(s)	51
BalI	TGGCCA	1 cut(s)	5
BbvI	GCAGC	1 cut(s)	58
BciT130I	CCWGG	1 cut(s)	130
BisI	GCNGC	1 cut(s)	72
BlsI	GCNGC	1 cut(s)	73
Bme1390I	CCNGG	1 cut(s)	130
BmeT110I	CYCGRG	1 cut(s)	51
BmrFI	CCNGG	1 cut(s)	130
BmsI	GCATC	1 cut(s)	46
Bsc4I	CCNNNNNNNGG	1 cut(s)	152
BseBI	CCWGG	1 cut(s)	130
BseLI	CCNNNNNNNGG	1 cut(s)	152
BseXI	GCAGC	1 cut(s)	58
BshFI	GGCC	1 cut(s)	5
BsiHKCI	CYCGRG	1 cut(s)	51
BslI	CCNNNNNNNGG	1 cut(s)	152
BsnI	GGCC	1 cut(s)	5
BsoBI	CYCGRG	1 cut(s)	51
BspANI	GGCC	1 cut(s)	5
BspHI	TCATGA	1 cut(s)	163
Bst2UI	CCWGG	1 cut(s)	130
Bst4CI	ACNGT	1 cut(s)	155
Bst6I	CTCTTC	1 cut(s)	176
BstNI	CCWGG	1 cut(s)	130
BstSCI	CCNGG	1 cut(s)	128
BstV1I	GCAGC	1 cut(s)	58
BsuRI	GGCC	1 cut(s)	5
BtsI	GCAGTG	1 cut(s)	123
BtsIMutI	CAGTG	1 cut(s)	123
CciI	TCATGA	1 cut(s)	163
CviAII	CATG	3 cut(s)	19, 149, 164
CviJI	RGCY	2 cut(s)	5, 159
CviKI_1	RGCY	2 cut(s)	5, 159
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	176
EarI	CTCTTC	1 cut(s)	176
Eco88I	CYCGRG	1 cut(s)	51
EcoRII	CCWGG	1 cut(s)	128
EcoT22I	ATGCAT	1 cut(s)	20
FaeI	CATG	3 cut(s)	22, 152, 167
FaiI	YATR	5 cut(s)	20, 107, 125, 150, 165
FatI	CATG	3 cut(s)	18, 148, 163
Fnu4HI	GCNGC	1 cut(s)	72
Fsp4HI	GCNGC	1 cut(s)	72
GluI	GCNGC	1 cut(s)	72
HaeIII	GGCC	1 cut(s)	5
Hin1II	CATG	3 cut(s)	22, 152, 167
Hpy166II	GTNNAC	2 cut(s)	91, 121
Hpy188I	TCNGA	2 cut(s)	43, 112
Hpy188III	TCNNGA	3 cut(s)	29, 53, 164
Hpy8I	GTNNAC	2 cut(s)	91, 121
HpyCH4III	ACNGT	1 cut(s)	155
HpyCH4V	TGCA	2 cut(s)	18, 74
Hsp92II	CATG	3 cut(s)	22, 152, 167
LpnPI	CCDG	4 cut(s)	19, 42, 115, 142
Lsp1109I	GCAGC	1 cut(s)	58
LweI	GCATC	1 cut(s)	46
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	167
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	1 cut(s)	60
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	1 cut(s)	20
MscI	TGGCCA	1 cut(s)	5
MslI	CAYNNNNRTG	1 cut(s)	96
Msp20I	TGGCCA	1 cut(s)	5
MspR9I	CCNGG	1 cut(s)	130
MvaI	CCWGG	1 cut(s)	130
NlaIII	CATG	3 cut(s)	22, 152, 167
NsiI	ATGCAT	1 cut(s)	20
OliI	CACNNNNGTG	1 cut(s)	96
PaeR7I	CTCGAG	1 cut(s)	51
PagI	TCATGA	1 cut(s)	163
PkrI	GCNGC	1 cut(s)	73
Psp6I	CCWGG	1 cut(s)	128
PspGI	CCWGG	1 cut(s)	128
RseI	CAYNNNNRTG	1 cut(s)	96
SatI	GCNGC	1 cut(s)	72
ScrFI	CCNGG	1 cut(s)	130
SetI	ASST	2 cut(s)	52, 161
SfaNI	GCATC	1 cut(s)	46
Sfr274I	CTCGAG	1 cut(s)	51
SgeI	CNNG	9 cut(s)	18, 31, 41, 63, 65, 141, 142, 161, 176
SlaI	CTCGAG	1 cut(s)	51
SmiMI	CAYNNNNRTG	1 cut(s)	96
SmlI	CTYRAG	1 cut(s)	51
SmoI	CTYRAG	1 cut(s)	51
Sse9I	AATT	1 cut(s)	167
StyD4I	CCNGG	1 cut(s)	128
TaaI	ACNGT	1 cut(s)	155
TaqI	TCGA	1 cut(s)	52
TasI	AATT	1 cut(s)	167
TscAI	CASTG	1 cut(s)	123
TseI	GCWGC	1 cut(s)	71
TspDTI	ATGAA	3 cut(s)	35, 152, 180
TspRI	CASTG	1 cut(s)	123
XhoI	CTCGAG	1 cut(s)	51
Zsp2I	ATGCAT	1 cut(s)	20

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.