pycom06g12450

Belongs to the tRNA nucleotidyltransferase poly(A) polymerase family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
Physical Location & Seq
Reverse (-)
17559356 .. 17562460
3105 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g12450.10

Sequence Viewer

Length: 1176 bp
ATGGTGATTTCGAGCTTCGGAATCGCCTGCCGACCCCATTTCTGCCTCCGTGCTCCTCCGTTTCACTGCATCAGCAAGGTGCAAGTGAACTTGGTCGCGGCCATGGAGGCGCTTGATGAGCCGGAGGAAGATGCTAAGGCGCCGGCATGGAAGAAGTTGAATTCCACAGAGCTTGGGATTACTACTTCAATGATCGACAAGCCTACTCGAAAGGTGACAAGAACATTTTCTTGGTGTGAAATAGTTGGCAAGCGGTTTCCCATATGTCATGTCCACATTGGTGATACAGTTATTGAGGTCTCAAGTTTTAGCATCTCTGCACGTAAGTCTGGCAGAAACTTAAGTCGTGATTTCAGGAAACCAAATCACTGTGACGACAATGATTATATGCGTTGGATGAATTGTTCACAGCGTGACTTTACAATTAACGGGTTGATGTTTGATCCTTATGCAAGGATAGTGTACGACTACATGGGAGGCATTGAAGATATTAGAAAAGCTAAAGTGTGCTTGCTTGATAAGGGAAGGCTCCTCATGGAAATGAACTACATGTTAGCGTATGGTTCTGCCGAAGCTTCTTTAAGGTTGTTATGGAAATTTGGACTTCTAGAACTGCTTCTTCCTATCCAGGTTTACACTTCCAGGGTTGCGATCGTACCATTCCACAATGCACTATCCGAACAACCTCAGATCGATCCGTTGGTGGTTGCTGCACTTAGCCTTGCAATTCACAATGGTGGAGATATGTTAGAGGCAGTAAGCATAGCCAAGAGAGTCACTAAAGTACATGATGTTAGCTTTCACGAGTTATTAGAAAATCAGAATTTGAACCATCGAGCTTTGCGAGATGAAGTTGTGAATCTCACAACATCTCTTAAGCGTGCACTCAATAATATGACTGATGAGCAAATAGTCTCTCAGGCAATGGCAGCGTACCCACAAGCACCATATTCGGATCTGGTACTTATCCCGTGGGGATTATCTTTGAGGGTCTGCCGGATTTTTAGCTGCGTAACGTCAGGCGCAGAGAGGGGATTCATCCCGAAGCAGGGCAGCAAGATTGATTATGAGTCATTAGCTCAGGGAGCCCTGCCGGAAGTTCGGCATATTTTCGCAAGAGTTGTGTTCGATACCATATATCCTCTTAGTCTAAATCCTGATAATGCTCAAACATGA

Protein Analysis

392

Amino Acids

43.99

Weight (kDa)

7.59

Isoelectric Point (pI)

41.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 139
AccII CGCG 1 cut(s) 98
AciI CCGC 2 cut(s) 98, 253
AclWI GGATC 3 cut(s) 437, 689, 963
AcoI YGGCCR 1 cut(s) 99
AcsI RAATTY 3 cut(s) 160, 596, 823
AcyI GRCGYC 1 cut(s) 140
AdeI CACNNNGTG 1 cut(s) 413
AfaI GTAC 5 cut(s) 464, 657, 786, 935, 963
AfiI CCNNNNNNNGG 2 cut(s) 1048, 1049
AflII CTTAAG 2 cut(s) 340, 875
AflIII ACRYGT 1 cut(s) 549
AgsI TTSAA 4 cut(s) 160, 189, 485, 829
AjnI CCWGG 2 cut(s) 627, 641
AjuI GAANNNNNNNTTGG 2 cut(s) 214, 246
AleI CACNNNNGTG 2 cut(s) 279, 735
AloI GAACNNNNNNTCC 2 cut(s) 388, 420
AluBI AGCT 8 cut(s) 15, 172, 500, 575, 798, 839, 1008, 1079
AluI AGCT 8 cut(s) 15, 172, 500, 575, 798, 839, 1008, 1079
Alw21I GWGCWC 2 cut(s) 55, 886
Alw26I GTCTC 2 cut(s) 304, 919
Alw44I GTGCAC 1 cut(s) 882
AlwI GGATC 3 cut(s) 437, 689, 963
AoxI GGCC 1 cut(s) 99
ApaLI GTGCAC 1 cut(s) 882
ApeKI GCWGC 4 cut(s) 710, 929, 1008, 1053
ApoI RAATTY 3 cut(s) 160, 596, 823
Asp700I GAANNNNTTC 2 cut(s) 226, 615
AspLEI GCGC 3 cut(s) 112, 142, 1025
AsuHPI GGTGA 3 cut(s) 16, 226, 293
BaeGI GKGCMC 1 cut(s) 886
BanI GGYRCC 1 cut(s) 139
BanII GRGCYC 1 cut(s) 1090
BauI CACGAG 1 cut(s) 803
Bbv12I GWGCWC 2 cut(s) 55, 886
BbvI GCAGC 4 cut(s) 697, 941, 995, 1065
BccI CCATC 1 cut(s) 840
BcgI CGANNNNNNTGC 2 cut(s) 933, 967
BciT130I CCWGG 2 cut(s) 629, 643
BcoDI GTCTC 2 cut(s) 304, 919
BfaI CTAG 1 cut(s) 608
BfoI RGCGCY 2 cut(s) 113, 143
BfrI CTTAAG 2 cut(s) 340, 875
BglI GCCNNNNNGGC 1 cut(s) 107
BisI GCNGC 5 cut(s) 99, 711, 930, 1009, 1054
BlsI GCNGC 5 cut(s) 100, 712, 931, 1010, 1055
Bme1390I CCNGG 2 cut(s) 629, 643
BmiI GGNNCC 3 cut(s) 141, 530, 1087
BmrFI CCNGG 2 cut(s) 629, 643
BmsI GCATC 3 cut(s) 78, 121, 321
Bpu10I CCTNAGC 2 cut(s) 135, 1080
BpuEI CTTGAG 1 cut(s) 286
Bsa29I ATCGAT 1 cut(s) 693
BsaAI YACGTR 1 cut(s) 323
BsaHI GRCGYC 1 cut(s) 140
BsaI GGTCTC 1 cut(s) 304
BsaJI CCNNGG 3 cut(s) 102, 642, 971
Bsc4I CCNNNNNNNGG 2 cut(s) 1048, 1049
Bse118I RCCGGY 1 cut(s) 142
Bse3DI GCAATG 1 cut(s) 930
BseBI CCWGG 2 cut(s) 629, 643
BseCI ATCGAT 1 cut(s) 693
BseDI CCNNGG 3 cut(s) 102, 642, 971
BseGI GGATG 2 cut(s) 402, 1038
BseLI CCNNNNNNNGG 2 cut(s) 1048, 1049
BseMI GCAATG 1 cut(s) 930
BseMII CTCAG 3 cut(s) 701, 932, 1094
BseRI GAGGAG 2 cut(s) 45, 521
BseSI GKGCMC 1 cut(s) 886
BseXI GCAGC 4 cut(s) 697, 941, 995, 1065
BsgI GTGCAG 2 cut(s) 303, 696
Bsh1236I CGCG 1 cut(s) 98
Bsh1285I CGRYCG 1 cut(s) 654
BshFI GGCC 1 cut(s) 101
BshNI GGYRCC 1 cut(s) 139
BshVI ATCGAT 1 cut(s) 693
BsiEI CGRYCG 1 cut(s) 654
BsiHKAI GWGCWC 2 cut(s) 55, 886
BsiSI CCGG 4 cut(s) 122, 143, 997, 1094
BslI CCNNNNNNNGG 2 cut(s) 1048, 1049
BsmAI GTCTC 2 cut(s) 304, 919
BsnI GGCC 1 cut(s) 101
Bso31I GGTCTC 1 cut(s) 304
Bsp1286I GDGCHC 3 cut(s) 55, 886, 1090
Bsp143I GATC 6 cut(s) 192, 442, 651, 690, 694, 955
Bsp19I CCATGG 1 cut(s) 102
BspACI CCGC 2 cut(s) 98, 253
BspANI GGCC 1 cut(s) 101
BspCNI CTCAG 3 cut(s) 700, 931, 1093
BspDI ATCGAT 1 cut(s) 693
BspFNI CGCG 1 cut(s) 98
BspLI GGNNCC 3 cut(s) 141, 530, 1087
BspPI GGATC 3 cut(s) 437, 689, 963
BspT107I GGYRCC 1 cut(s) 139
BspTI CTTAAG 2 cut(s) 340, 875
BspTNI GGTCTC 1 cut(s) 304
BsrDI GCAATG 1 cut(s) 930
BsrFI RCCGGY 1 cut(s) 142
BssAI RCCGGY 1 cut(s) 142
BssECI CCNNGG 3 cut(s) 102, 642, 971
BssMI GATC 6 cut(s) 192, 442, 651, 690, 694, 955
BssNI GRCGYC 1 cut(s) 140
BssSI CACGAG 1 cut(s) 803
BssT1I CCWWGG 1 cut(s) 102
Bst2BI CACGAG 1 cut(s) 803
Bst2UI CCWGG 2 cut(s) 629, 643
Bst4CI ACNGT 2 cut(s) 289, 371
BstACI GRCGYC 1 cut(s) 140
BstAFI CTTAAG 2 cut(s) 340, 875
BstBAI YACGTR 1 cut(s) 323
BstC8I GCNNGC 5 cut(s) 28, 144, 251, 512, 882
BstDEI CTNAG 6 cut(s) 135, 687, 716, 918, 1080, 1145
BstDSI CCRYGG 2 cut(s) 102, 971
BstF5I GGATG 2 cut(s) 402, 1038
BstFNI CGCG 1 cut(s) 98
BstH2I RGCGCY 2 cut(s) 113, 143
BstHHI GCGC 3 cut(s) 112, 142, 1025
BstKTI GATC 6 cut(s) 195, 445, 654, 693, 697, 958
BstMAI GTCTC 2 cut(s) 304, 919
BstMBI GATC 6 cut(s) 192, 442, 651, 690, 694, 955
BstMCI CGRYCG 1 cut(s) 654
BstMWI GCNNNNNNNGC 4 cut(s) 107, 118, 929, 1085
BstNI CCWGG 2 cut(s) 629, 643
BstNSI RCATGY 1 cut(s) 553
BstSCI CCNGG 2 cut(s) 627, 641
BstSLI GKGCMC 1 cut(s) 886
BstUI CGCG 1 cut(s) 98
BstV1I GCAGC 4 cut(s) 697, 941, 995, 1065
BstX2I RGATCY 1 cut(s) 955
BstYI RGATCY 1 cut(s) 955
Bsu15I ATCGAT 1 cut(s) 693
BsuRI GGCC 1 cut(s) 101
BsuTUI ATCGAT 1 cut(s) 693
BtgI CCRYGG 2 cut(s) 102, 971
BtsCI GGATG 2 cut(s) 402, 1038
BtsI GCAGTG 1 cut(s) 64
BtsIMutI CAGTG 2 cut(s) 64, 367
Cac8I GCNNGC 5 cut(s) 28, 144, 251, 512, 882
CfoI GCGC 3 cut(s) 112, 142, 1025
Cfr10I RCCGGY 1 cut(s) 142
ClaI ATCGAT 1 cut(s) 693
Csp6I GTAC 5 cut(s) 463, 656, 785, 934, 962
CspCI CAANNNNNGTGG 2 cut(s) 154, 189
CviAII CATG 8 cut(s) 103, 147, 269, 472, 535, 550, 788, 1173
CviQI GTAC 5 cut(s) 463, 656, 785, 934, 962
DdeI CTNAG 6 cut(s) 135, 687, 716, 918, 1080, 1145
DinI GGCGCC 1 cut(s) 141
DpnI GATC 6 cut(s) 194, 444, 653, 692, 696, 957
DpnII GATC 6 cut(s) 192, 442, 651, 690, 694, 955
DraIII CACNNNGTG 1 cut(s) 413
EaeI YGGCCR 1 cut(s) 99
Eco130I CCWWGG 1 cut(s) 102
Eco24I GRGCYC 1 cut(s) 1090
Eco31I GGTCTC 1 cut(s) 304
EcoRI GAATTC 1 cut(s) 160
EcoRII CCWGG 2 cut(s) 627, 641
EcoT14I CCWWGG 1 cut(s) 102
EcoT38I GRGCYC 1 cut(s) 1090
EgeI GGCGCC 1 cut(s) 141
EheI GGCGCC 1 cut(s) 141
ErhI CCWWGG 1 cut(s) 102
FaeI CATG 8 cut(s) 106, 150, 272, 475, 538, 553, 791, 1176
FatI CATG 8 cut(s) 102, 146, 268, 471, 534, 549, 787, 1172
FauNDI CATATG 1 cut(s) 263
Fnu4HI GCNGC 5 cut(s) 99, 711, 930, 1009, 1054
FokI GGATG 2 cut(s) 409, 1025
FriOI GRGCYC 1 cut(s) 1090
Fsp4HI GCNGC 5 cut(s) 99, 711, 930, 1009, 1054
FspBI CTAG 1 cut(s) 608
GlaI GCGC 3 cut(s) 111, 141, 1024
GluI GCNGC 5 cut(s) 99, 711, 930, 1009, 1054
HaeII RGCGCY 2 cut(s) 113, 143
HaeIII GGCC 1 cut(s) 101
HapII CCGG 4 cut(s) 122, 143, 997, 1094
HhaI GCGC 3 cut(s) 112, 142, 1025
Hin1I GRCGYC 1 cut(s) 140
Hin1II CATG 8 cut(s) 106, 150, 272, 475, 538, 553, 791, 1176
Hin6I GCGC 3 cut(s) 110, 140, 1023
HinP1I GCGC 3 cut(s) 110, 140, 1023
HindIII AAGCTT 1 cut(s) 573
HinfI GANTC 5 cut(s) 21, 774, 859, 1035, 1070
HpaII CCGG 4 cut(s) 122, 143, 997, 1094
HphI GGTGA 3 cut(s) 16, 226, 293
Hpy166II GTNNAC 6 cut(s) 88, 274, 407, 463, 634, 884
Hpy188I TCNGA 5 cut(s) 20, 679, 690, 822, 955
Hpy188III TCNNGA 6 cut(s) 347, 355, 608, 803, 1042, 1157
Hpy8I GTNNAC 6 cut(s) 88, 274, 407, 463, 634, 884
HpyAV CCTTC 1 cut(s) 519
HpyCH4III ACNGT 2 cut(s) 289, 371
HpyCH4IV ACGT 2 cut(s) 322, 1016
HpyCH4V TGCA 8 cut(s) 69, 82, 320, 452, 671, 713, 725, 884
HpyF10VI GCNNNNNNNGC 4 cut(s) 107, 118, 929, 1085
HpyF3I CTNAG 6 cut(s) 135, 687, 716, 918, 1080, 1145
HpySE526I ACGT 2 cut(s) 322, 1016
Hsp92I GRCGYC 1 cut(s) 140
Hsp92II CATG 8 cut(s) 106, 150, 272, 475, 538, 553, 791, 1176
HspAI GCGC 3 cut(s) 110, 140, 1023
KasI GGCGCC 1 cut(s) 139
KroI GCCGGC 1 cut(s) 142
KroNI GCCGGC 1 cut(s) 144
Kzo9I GATC 6 cut(s) 192, 442, 651, 690, 694, 955
LmnI GCTCC 3 cut(s) 58, 534, 1085
Lsp1109I GCAGC 4 cut(s) 697, 941, 995, 1065
LweI GCATC 3 cut(s) 78, 121, 321
MaeI CTAG 1 cut(s) 608
MaeII ACGT 2 cut(s) 322, 1016
MaeIII GTNAC 5 cut(s) 214, 371, 413, 775, 1012
MalI GATC 6 cut(s) 194, 444, 653, 692, 696, 957
MboI GATC 6 cut(s) 192, 442, 651, 690, 694, 955
MboII GAAGA 4 cut(s) 140, 163, 497, 611
MflI RGATCY 1 cut(s) 955
MhlI GDGCHC 3 cut(s) 55, 886, 1090
MluCI AATT 6 cut(s) 160, 400, 423, 596, 726, 823
Mly113I GGCGCC 1 cut(s) 140
MlyI GAGTC 2 cut(s) 783, 1079
MmeI TCCRAC 1 cut(s) 374
MroNI GCCGGC 1 cut(s) 142
MroXI GAANNNNTTC 2 cut(s) 226, 615
MseI TTAA 4 cut(s) 341, 426, 581, 876
MslI CAYNNNNRTG 3 cut(s) 279, 539, 735
MspCI CTTAAG 2 cut(s) 340, 875
MspI CCGG 4 cut(s) 122, 143, 997, 1094
MspR9I CCNGG 2 cut(s) 629, 643
MvaI CCWGG 2 cut(s) 629, 643
MvnI CGCG 1 cut(s) 98
MwoI GCNNNNNNNGC 4 cut(s) 107, 118, 929, 1085
NaeI GCCGGC 1 cut(s) 144
NarI GGCGCC 1 cut(s) 140
NcoI CCATGG 1 cut(s) 102
NdeI CATATG 1 cut(s) 263
NdeII GATC 6 cut(s) 192, 442, 651, 690, 694, 955
NgoMIV GCCGGC 1 cut(s) 142
NlaIII CATG 8 cut(s) 106, 150, 272, 475, 538, 553, 791, 1176
NlaIV GGNNCC 3 cut(s) 141, 530, 1087
NmuCI GTSAC 4 cut(s) 214, 371, 413, 775
NspI RCATGY 1 cut(s) 553
OliI CACNNNNGTG 2 cut(s) 279, 735
PciI ACATGT 1 cut(s) 549
PcsI WCGNNNNNNNCGW 1 cut(s) 841
PdiI GCCGGC 1 cut(s) 144
PdmI GAANNNNTTC 2 cut(s) 226, 615
PfeI GAWTC 3 cut(s) 21, 859, 1035
PkrI GCNGC 5 cut(s) 100, 712, 931, 1010, 1055
Ple19I CGATCG 1 cut(s) 654
PleI GAGTC 2 cut(s) 782, 1078
PluTI GGCGCC 1 cut(s) 143
PpsI GAGTC 2 cut(s) 782, 1078
Ppu21I YACGTR 1 cut(s) 323
PscI ACATGT 1 cut(s) 549
Psp6I CCWGG 2 cut(s) 627, 641
PspGI CCWGG 2 cut(s) 627, 641
PspN4I GGNNCC 3 cut(s) 141, 530, 1087
PsuI RGATCY 1 cut(s) 955
PvuI CGATCG 1 cut(s) 654
RsaI GTAC 5 cut(s) 464, 657, 786, 935, 963
RsaNI GTAC 5 cut(s) 463, 656, 785, 934, 962
RseI CAYNNNNRTG 3 cut(s) 279, 539, 735
SaqAI TTAA 4 cut(s) 341, 426, 581, 876
SatI GCNGC 5 cut(s) 99, 711, 930, 1009, 1054
Sau3AI GATC 6 cut(s) 192, 442, 651, 690, 694, 955
SchI GAGTC 2 cut(s) 783, 1079
ScrFI CCNGG 2 cut(s) 629, 643
SduI GDGCHC 3 cut(s) 55, 886, 1090
SfaNI GCATC 3 cut(s) 78, 121, 321
SfoI GGCGCC 1 cut(s) 141
SmiMI CAYNNNNRTG 3 cut(s) 279, 539, 735
SmlI CTYRAG 3 cut(s) 301, 340, 875
SmoI CTYRAG 3 cut(s) 301, 340, 875
Sse9I AATT 6 cut(s) 160, 400, 423, 596, 726, 823
SsiI CCGC 2 cut(s) 98, 253
SspDI GGCGCC 1 cut(s) 139
SspMI CTAG 1 cut(s) 608
StyD4I CCNGG 2 cut(s) 627, 641
StyI CCWWGG 1 cut(s) 102
TaaI ACNGT 2 cut(s) 289, 371
TaiI ACGT 2 cut(s) 325, 1019
TaqI TCGA 6 cut(s) 11, 195, 208, 693, 835, 1128
TasI AATT 6 cut(s) 160, 400, 423, 596, 726, 823
TatI WGTACW 1 cut(s) 784
TauI GCSGC 1 cut(s) 101
TfiI GAWTC 3 cut(s) 21, 859, 1035
Tru1I TTAA 4 cut(s) 341, 426, 581, 876
Tru9I TTAA 4 cut(s) 341, 426, 581, 876
TscAI CASTG 2 cut(s) 71, 374
TseFI GTSAC 4 cut(s) 214, 371, 413, 775
TseI GCWGC 4 cut(s) 710, 929, 1008, 1053
Tsp45I GTSAC 4 cut(s) 214, 371, 413, 775
TspDTI ATGAA 4 cut(s) 413, 557, 864, 1027
TspGWI ACGGA 3 cut(s) 38, 48, 687
TspRI CASTG 2 cut(s) 71, 374
Vha464I CTTAAG 2 cut(s) 340, 875
VneI GTGCAC 1 cut(s) 882
XapI RAATTY 3 cut(s) 160, 596, 823
XbaI TCTAGA 1 cut(s) 607
XceI RCATGY 1 cut(s) 553
XmnI GAANNNNTTC 2 cut(s) 226, 615
XspI CTAG 1 cut(s) 608
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.