Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0001230

Physical Location & Seq

Genomic Coordinates Forward (+)

5338457 .. 5339729

Gene Structure 1273 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g09270.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGGAAAGGAATTACATGATGGCATATGGTTCTGCTGAGGCTTCTCTCCGATTATTATGGAAATTTGGACTTCTGGAACTACTTCTACCCATCCAGTCCCTTTTTTCTAACTTAGATAAACTTCTTGCACCTGACAAGCCGTGCCACAGTAGCTTATGGATTGCAATCTTAGCATTCCACAAAGCACTCTCTGAACAACCTCGAGATGCGTTGGTGGTTGCTGCATTTACCCTTGCTGTTCACAATGGTGGAGATATGTTGGAAGCAGTGGAGATAGCCAGGACTATCACTAAACCCCATGAAGTTAGCTTTCATGAACTATTAGAACCTCAGAGATTGGACTCTGGAGCATATACTAAAGAGATTAGGGATCTTGAGGCATCTTTTAGGCGGGCAATCGATCACATGACTGATGCGCAAATTGTCTCAGAGGCCATGGCAGCGTACCCACAAGCACCGTTTTCTGATCTGGTATTTATACCATGGGGATTATCTTTGAGGGTCTCTCGGATTTTCAACCGTGTAAAGGTGGGTGGGGAGTTGGGGTCTGTGGCAAAGCAAGGCAGCAAGATTGACTACGAGTCATTAGCTCAGGGGAGCCTGCCAGAGATTCGGCATATTTTTGCAAGAGTCGTGTTTGATACCATATATCCTCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004652 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006276 GO:0006378 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016740 GO:0016772 GO:0016779 GO:0031123 GO:0031124 GO:0034641 GO:0043170 GO:0043412 GO:0043631 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0070566 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PolyA_pol PolyA_pol_RNAbd

Protein Analysis

220

Amino Acids

24.5

Weight (kDa)

5.97

Isoelectric Point (pI)

42.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001230)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28090 AT1G28090 AT1G28090 AT1G28090 AT1G28090 AT3G48830 AT5G23690
fragaria_vesca	FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09270
malus_domestica	MD06G1133100.v1.1 MD14G1149300.v1.1 MD14G1149500.v1.1
prunus_persica	Prupe.5G144000_v2.0.a1 Prupe.5G144300_v2.0.a1
pyrus_communis	pycom06g12450 pycom14g12410
rosa_chinensis	RchiOBHm_Chr3g0469071 RchiOBHm_Chr7g0189011
rosa_laevigata	RLG00000004641 RLG00000024375 RLG00000024379 RLG00000024383 RLG00000024385
rosa_multiflora	Rmu_sc0000302.1_g000052 Rmu_sc0000326.1_g000001 Rmu_sc0007139.1_g000009 Rmu_sc0016080.1_g000004
rosa_roxburghii	Rroxscaffold_3G00265860
rosa_rugosa	Rorug03G0099300 Rorug06G0495400 Rorug06G0495500
rosa_samantha	Rh3AG148200 Rh3AG148500 Rh3BG171000 Rh3BG171100 Rh3BG171500 Rh7AG100100 Rh7BG102400 Rh7CG104000 Rh7DG102100
rosa_wichuraiana	Rw0G010940 Rw0G014560 Rw0G014590 Rw7G008650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	417
AciI	CCGC	1 cut(s)	391
AclWI	GGATC	1 cut(s)	378
AcsI	RAATTY	1 cut(s)	62
AfaI	GTAC	1 cut(s)	446
AfiI	CCNNNNNNNGG	1 cut(s)	526
AgsI	TTSAA	1 cut(s)	517
AhdI	GACNNNNNGTC	1 cut(s)	580
AjnI	CCWGG	1 cut(s)	278
AleI	CACNNNNGTG	1 cut(s)	246
AluBI	AGCT	3 cut(s)	153, 309, 590
AluI	AGCT	3 cut(s)	153, 309, 590
Alw26I	GTCTC	2 cut(s)	430, 508
AlwI	GGATC	1 cut(s)	378
Ama87I	CYCGRG	1 cut(s)	201
AoxI	GGCC	1 cut(s)	432
ApeKI	GCWGC	3 cut(s)	221, 440, 564
ApoI	RAATTY	1 cut(s)	62
Asp700I	GAANNNNTTC	1 cut(s)	81
AspLEI	GCGC	1 cut(s)	418
AvaI	CYCGRG	1 cut(s)	201
BbvCI	CCTCAGC	1 cut(s)	36
BbvI	GCAGC	3 cut(s)	208, 452, 576
BccI	CCATC	2 cut(s)	13, 98
BceAI	ACGGC	1 cut(s)	124
BciT130I	CCWGG	1 cut(s)	280
BcoDI	GTCTC	2 cut(s)	430, 508
BisI	GCNGC	3 cut(s)	222, 441, 565
BlsI	GCNGC	3 cut(s)	223, 442, 566
Bme1390I	CCNGG	1 cut(s)	280
BmeRI	GACNNNNNGTC	1 cut(s)	580
BmeT110I	CYCGRG	1 cut(s)	201
BmiI	GGNNCC	1 cut(s)	599
BmrFI	CCNGG	1 cut(s)	280
BmsI	GCATC	3 cut(s)	196, 389, 403
BplI	GAGNNNNNCTC	2 cut(s)	490, 522
BpmI	CTGGAG	1 cut(s)	366
Bpu10I	CCTNAGC	2 cut(s)	36, 591
BpuEI	CTTGAG	1 cut(s)	395
Bsa29I	ATCGAT	1 cut(s)	399
BsaBI	GATNNNNATC	1 cut(s)	164
BsaI	GGTCTC	1 cut(s)	508
BsaJI	CCNNGG	2 cut(s)	435, 482
BsaXI	ACNNNNNCTCC	2 cut(s)	530, 560
Bsc4I	CCNNNNNNNGG	1 cut(s)	526
Bse1I	ACTGG	1 cut(s)	94
Bse8I	GATNNNNATC	1 cut(s)	164
BseBI	CCWGG	1 cut(s)	280
BseCI	ATCGAT	1 cut(s)	399
BseDI	CCNNGG	2 cut(s)	435, 482
BseGI	GGATG	1 cut(s)	90
BseJI	GATNNNNATC	1 cut(s)	164
BseLI	CCNNNNNNNGG	1 cut(s)	526
BseMII	CTCAG	4 cut(s)	27, 344, 441, 605
BseNI	ACTGG	1 cut(s)	94
BseXI	GCAGC	3 cut(s)	208, 452, 576
BshFI	GGCC	1 cut(s)	434
BshVI	ATCGAT	1 cut(s)	399
BsiHKCI	CYCGRG	1 cut(s)	201
BslFI	GGGAC	1 cut(s)	82
BslI	CCNNNNNNNGG	1 cut(s)	526
BsmAI	GTCTC	2 cut(s)	430, 508
BsmFI	GGGAC	1 cut(s)	82
BsmI	GAATGC	1 cut(s)	173
BsnI	GGCC	1 cut(s)	434
Bso31I	GGTCTC	1 cut(s)	508
BsoBI	CYCGRG	1 cut(s)	201
Bsp143I	GATC	3 cut(s)	370, 400, 466
Bsp19I	CCATGG	2 cut(s)	435, 482
BspACI	CCGC	1 cut(s)	391
BspANI	GGCC	1 cut(s)	434
BspCNI	CTCAG	4 cut(s)	28, 343, 440, 604
BspDI	ATCGAT	1 cut(s)	399
BspHI	TCATGA	1 cut(s)	313
BspLI	GGNNCC	1 cut(s)	599
BspPI	GGATC	1 cut(s)	378
BspTNI	GGTCTC	1 cut(s)	508
BsrI	ACTGG	1 cut(s)	94
BssECI	CCNNGG	2 cut(s)	435, 482
BssMI	GATC	3 cut(s)	370, 400, 466
BssT1I	CCWWGG	2 cut(s)	435, 482
Bst2UI	CCWGG	1 cut(s)	280
Bst4CI	ACNGT	3 cut(s)	149, 459, 521
BstC8I	GCNNGC	2 cut(s)	393, 602
BstDEI	CTNAG	6 cut(s)	36, 112, 169, 330, 427, 591
BstDSI	CCRYGG	2 cut(s)	435, 482
BstF5I	GGATG	1 cut(s)	90
BstHHI	GCGC	1 cut(s)	418
BstKTI	GATC	3 cut(s)	373, 403, 469
BstMAI	GTCTC	2 cut(s)	430, 508
BstMBI	GATC	3 cut(s)	370, 400, 466
BstMWI	GCNNNNNNNGC	3 cut(s)	150, 170, 440
BstNI	CCWGG	1 cut(s)	280
BstSCI	CCNGG	1 cut(s)	278
BstV1I	GCAGC	3 cut(s)	208, 452, 576
BstX2I	RGATCY	1 cut(s)	370
BstYI	RGATCY	1 cut(s)	370
Bsu15I	ATCGAT	1 cut(s)	399
BsuRI	GGCC	1 cut(s)	434
BsuTUI	ATCGAT	1 cut(s)	399
BtgI	CCRYGG	2 cut(s)	435, 482
BtsCI	GGATG	1 cut(s)	90
BtsI	GCAGTG	1 cut(s)	273
BtsIMutI	CAGTG	1 cut(s)	273
Cac8I	GCNNGC	2 cut(s)	393, 602
CciI	TCATGA	1 cut(s)	313
CfoI	GCGC	1 cut(s)	418
ClaI	ATCGAT	1 cut(s)	399
Csp6I	GTAC	1 cut(s)	445
CviAII	CATG	6 cut(s)	16, 299, 314, 406, 436, 483
CviJI	RGCY	8 cut(s)	41, 139, 153, 278, 309, 434, 590, 600
CviKI_1	RGCY	8 cut(s)	41, 139, 153, 278, 309, 434, 590, 600
CviQI	GTAC	1 cut(s)	445
DdeI	CTNAG	6 cut(s)	36, 112, 169, 330, 427, 591
DpnI	GATC	3 cut(s)	372, 402, 468
DpnII	GATC	3 cut(s)	370, 400, 466
DriI	GACNNNNNGTC	1 cut(s)	580
Eam1105I	GACNNNNNGTC	1 cut(s)	580
Eco130I	CCWWGG	2 cut(s)	435, 482
Eco31I	GGTCTC	1 cut(s)	508
Eco88I	CYCGRG	1 cut(s)	201
EcoRII	CCWGG	1 cut(s)	278
EcoT14I	CCWWGG	2 cut(s)	435, 482
ErhI	CCWWGG	2 cut(s)	435, 482
FaeI	CATG	6 cut(s)	19, 302, 317, 409, 439, 486
FaqI	GGGAC	1 cut(s)	82
FatI	CATG	6 cut(s)	15, 298, 313, 405, 435, 482
FauI	CCCGC	1 cut(s)	384
FauNDI	CATATG	1 cut(s)	25
Fnu4HI	GCNGC	3 cut(s)	222, 441, 565
FokI	GGATG	1 cut(s)	77
Fsp4HI	GCNGC	3 cut(s)	222, 441, 565
FspI	TGCGCA	1 cut(s)	417
GlaI	GCGC	1 cut(s)	417
GluI	GCNGC	3 cut(s)	222, 441, 565
GsuI	CTGGAG	1 cut(s)	366
HaeIII	GGCC	1 cut(s)	434
HhaI	GCGC	1 cut(s)	418
Hin1II	CATG	6 cut(s)	19, 302, 317, 409, 439, 486
Hin6I	GCGC	1 cut(s)	416
HinP1I	GCGC	1 cut(s)	416
HinfI	GANTC	4 cut(s)	341, 581, 610, 630
Hpy166II	GTNNAC	1 cut(s)	241
Hpy188I	TCNGA	6 cut(s)	50, 193, 333, 430, 466, 510
Hpy188III	TCNNGA	5 cut(s)	74, 203, 314, 345, 374
Hpy8I	GTNNAC	1 cut(s)	241
HpyCH4III	ACNGT	3 cut(s)	149, 459, 521
HpyCH4V	TGCA	4 cut(s)	128, 164, 224, 626
HpyF10VI	GCNNNNNNNGC	3 cut(s)	150, 170, 440
HpyF3I	CTNAG	6 cut(s)	36, 112, 169, 330, 427, 591
Hsp92II	CATG	6 cut(s)	19, 302, 317, 409, 439, 486
HspAI	GCGC	1 cut(s)	416
Kzo9I	GATC	3 cut(s)	370, 400, 466
LmnI	GCTCC	2 cut(s)	347, 597
Lsp1109I	GCAGC	3 cut(s)	208, 452, 576
LweI	GCATC	3 cut(s)	196, 389, 403
MalI	GATC	3 cut(s)	372, 402, 468
MboI	GATC	3 cut(s)	370, 400, 466
MflI	RGATCY	1 cut(s)	370
MluCI	AATT	3 cut(s)	10, 62, 420
MlyI	GAGTC	3 cut(s)	335, 590, 639
MmeI	TCCRAC	1 cut(s)	240
MnlI	CCTC	6 cut(s)	31, 210, 339, 370, 424, 492
MroXI	GAANNNNTTC	1 cut(s)	81
MslI	CAYNNNNRTG	1 cut(s)	246
MspR9I	CCNGG	1 cut(s)	280
Mva1269I	GAATGC	1 cut(s)	173
MvaI	CCWGG	1 cut(s)	280
MwoI	GCNNNNNNNGC	3 cut(s)	150, 170, 440
NcoI	CCATGG	2 cut(s)	435, 482
NdeI	CATATG	1 cut(s)	25
NdeII	GATC	3 cut(s)	370, 400, 466
NlaIII	CATG	6 cut(s)	19, 302, 317, 409, 439, 486
NlaIV	GGNNCC	1 cut(s)	599
NsbI	TGCGCA	1 cut(s)	417
OliI	CACNNNNGTG	1 cut(s)	246
PaeR7I	CTCGAG	1 cut(s)	201
PagI	TCATGA	1 cut(s)	313
PctI	GAATGC	1 cut(s)	173
PdmI	GAANNNNTTC	1 cut(s)	81
PfeI	GAWTC	1 cut(s)	610
PkrI	GCNGC	3 cut(s)	223, 442, 566
PleI	GAGTC	3 cut(s)	335, 589, 638
PpsI	GAGTC	3 cut(s)	335, 589, 638
Psp6I	CCWGG	1 cut(s)	278
PspGI	CCWGG	1 cut(s)	278
PspN4I	GGNNCC	1 cut(s)	599
PsrI	GAACNNNNNNTAC	2 cut(s)	69, 101
PsuI	RGATCY	1 cut(s)	370
RsaI	GTAC	1 cut(s)	446
RsaNI	GTAC	1 cut(s)	445
RseI	CAYNNNNRTG	1 cut(s)	246
SatI	GCNGC	3 cut(s)	222, 441, 565
Sau3AI	GATC	3 cut(s)	370, 400, 466
SchI	GAGTC	3 cut(s)	335, 590, 639
ScrFI	CCNGG	1 cut(s)	280
SetI	ASST	7 cut(s)	133, 155, 202, 311, 331, 531, 592
SfaNI	GCATC	3 cut(s)	196, 389, 403
Sfr274I	CTCGAG	1 cut(s)	201
SlaI	CTCGAG	1 cut(s)	201
SmiMI	CAYNNNNRTG	1 cut(s)	246
SmlI	CTYRAG	2 cut(s)	201, 374
SmoI	CTYRAG	2 cut(s)	201, 374
Sse9I	AATT	3 cut(s)	10, 62, 420
SsiI	CCGC	1 cut(s)	391
StyD4I	CCNGG	1 cut(s)	278
StyI	CCWWGG	2 cut(s)	435, 482
TaaI	ACNGT	3 cut(s)	149, 459, 521
TaqI	TCGA	2 cut(s)	202, 399
TasI	AATT	3 cut(s)	10, 62, 420
TfiI	GAWTC	1 cut(s)	610
TscAI	CASTG	1 cut(s)	273
TseI	GCWGC	3 cut(s)	221, 440, 564
TspDTI	ATGAA	3 cut(s)	302, 315, 330
TspRI	CASTG	1 cut(s)	273
XapI	RAATTY	1 cut(s)	62
XhoI	CTCGAG	1 cut(s)	201
XmnI	GAANNNNTTC	1 cut(s)	81

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.