Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0016080.1

Orthogroup ID

OG0001230

Physical Location & Seq

Genomic Coordinates Reverse (-)

12142 .. 15301

Gene Structure 3160 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0016080.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

atggcgatttcaagtttagggtttgcttgccgacccaatttcaacctccgcactcccacctttcaatgcatgggcaaggttcaattgaacttggttgcggccatggaggcgattgatgagcaagagggtcgttctaagggcaacaagaccaatgattcggccagtggaatgagcaatttttgttgggatgaaggagatgggaaggcaccacagtggaagaagctgaattcgaaagaggtgacgagaacattttcttggtgccaagtagttggaaggcggtttcctatatgtcatgtgcacattggtgatacggtagtggaggtttctagttttagcatcagcgcacaaagctttggtaggaactcaagaagtgattttaaaaaacctgtacgctgtgatgacaaggattttatgcgttggagcaattgtttgaagcgtgactttacaattaacgggttgatgtttgatccttatgcaaggatagtgtatgactacttgggaggaatagaagatcttagaaaagctaaagtccaaaccgttgtaccagcaagtacttcatttcgagaggattgtgctcgcattctacgtgccataagaattgctgctcgtttaggattccgtatttcgaaggaaacagctaattctattaaaaatttatcctactcaattcttaggcttgataagggaaggatcctcatggaaatgaattatatgatggcgtatggttctgctgaagcttccctccgattattatggagatttggacttctggaactacttctacccatccaggtatttataccatggggattatctttgagggtctcccagattttcaactgcgtaaaagtgggtgggaagctgggatttgtggcaaagcaaggcagcaagattgactacgagtcattagctcagggcagcctgctagaggttcggcatatttttgcaagagtcgtgtttgataccatatatcctctttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004652 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006276 GO:0006378 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016740 GO:0016772 GO:0016779 GO:0031123 GO:0031124 GO:0034641 GO:0043170 GO:0043412 GO:0043631 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0070566 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PolyA_pol PolyA_pol_RNAbd

Protein Analysis

326

Amino Acids

36.87

Weight (kDa)

9.52

Isoelectric Point (pI)

41.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001230)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28090 AT1G28090 AT1G28090 AT1G28090 AT1G28090 AT3G48830 AT5G23690
fragaria_vesca	FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09270
malus_domestica	MD06G1133100.v1.1 MD14G1149300.v1.1 MD14G1149500.v1.1
prunus_persica	Prupe.5G144000_v2.0.a1 Prupe.5G144300_v2.0.a1
pyrus_communis	pycom06g12450 pycom14g12410
rosa_chinensis	RchiOBHm_Chr3g0469071 RchiOBHm_Chr7g0189011
rosa_laevigata	RLG00000004641 RLG00000024375 RLG00000024379 RLG00000024383 RLG00000024385
rosa_multiflora	Rmu_sc0000302.1_g000052 Rmu_sc0000326.1_g000001 Rmu_sc0007139.1_g000009 Rmu_sc0016080.1_g000004
rosa_roxburghii	Rroxscaffold_3G00265860
rosa_rugosa	Rorug03G0099300 Rorug06G0495400 Rorug06G0495500
rosa_samantha	Rh3AG148200 Rh3AG148500 Rh3BG171000 Rh3BG171100 Rh3BG171500 Rh7AG100100 Rh7BG102400 Rh7CG104000 Rh7DG102100
rosa_wichuraiana	Rw0G010940 Rw0G014560 Rw0G014590 Rw7G008650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	205, 258
AciI	CCGC	3 cut(s)	49, 98, 277
AclWI	GGATC	3 cut(s)	461, 685, 698
AcoI	YGGCCR	2 cut(s)	99, 159
AcsI	RAATTY	2 cut(s)	226, 652
AcuI	CTGAAG	1 cut(s)	753
AfaI	GTAC	3 cut(s)	390, 543, 553
AfiI	CCNNNNNNNGG	1 cut(s)	928
AgsI	TTSAA	7 cut(s)	12, 43, 65, 83, 88, 433, 838
AhdI	GACNNNNNGTC	1 cut(s)	901
AjnI	CCWGG	1 cut(s)	789
AjuI	GAANNNNNNNTTGG	2 cut(s)	238, 270
AleI	CACNNNNGTG	2 cut(s)	211, 303
AluBI	AGCT	7 cut(s)	223, 351, 524, 638, 737, 862, 911
AluI	AGCT	7 cut(s)	223, 351, 524, 638, 737, 862, 911
Alw21I	GWGCWC	2 cut(s)	300, 577
Alw26I	GTCTC	1 cut(s)	829
Alw44I	GTGCAC	1 cut(s)	296
AlwI	GGATC	3 cut(s)	461, 685, 698
AoxI	GGCC	2 cut(s)	99, 159
ApaLI	GTGCAC	1 cut(s)	296
ApeKI	GCWGC	3 cut(s)	602, 885, 918
ApoI	RAATTY	2 cut(s)	226, 652
ArsI	GACNNNNNNTTYG	2 cut(s)	139, 171
Asp700I	GAANNNNTTC	2 cut(s)	250, 777
AspLEI	GCGC	1 cut(s)	344
AsuHPI	GGTGA	2 cut(s)	250, 317
AsuII	TTCGAA	2 cut(s)	230, 626
BaeGI	GKGCMC	1 cut(s)	300
BaeI	ACNNNNGTAYC	4 cut(s)	300, 333, 525, 558
BamHI	GGATCC	1 cut(s)	690
BanI	GGYRCC	2 cut(s)	205, 258
Bbv12I	GWGCWC	2 cut(s)	300, 577
BbvI	GCAGC	3 cut(s)	589, 897, 930
BccI	CCATC	3 cut(s)	191, 709, 794
BcgI	CGANNNNNNTGC	2 cut(s)	110, 144
BciT130I	CCWGG	1 cut(s)	791
BcoDI	GTCTC	1 cut(s)	829
BfaI	CTAG	2 cut(s)	327, 926
BglI	GCCNNNNNGGC	1 cut(s)	107
BglII	AGATCT	1 cut(s)	511
BisI	GCNGC	4 cut(s)	99, 603, 886, 919
BlsI	GCNGC	4 cut(s)	100, 604, 887, 920
BmcAI	AGTACT	1 cut(s)	553
Bme1390I	CCNGG	1 cut(s)	791
BmeRI	GACNNNNNGTC	1 cut(s)	901
BmiI	GGNNCC	3 cut(s)	207, 260, 692
BmrFI	CCNGG	1 cut(s)	791
BmsI	GCATC	1 cut(s)	345
Bpu10I	CCTNAGC	1 cut(s)	912
Bpu14I	TTCGAA	2 cut(s)	230, 626
BpuEI	CTTGAG	1 cut(s)	349
BsaAI	YACGTR	1 cut(s)	587
BsaI	GGTCTC	1 cut(s)	829
BsaJI	CCNNGG	2 cut(s)	102, 803
BsaXI	ACNNNNNCTCC	2 cut(s)	412, 442
Bsc4I	CCNNNNNNNGG	1 cut(s)	928
Bse1I	ACTGG	1 cut(s)	162
BseBI	CCWGG	1 cut(s)	791
BseDI	CCNNGG	2 cut(s)	102, 803
BseGI	GGATG	2 cut(s)	193, 786
BseLI	CCNNNNNNNGG	1 cut(s)	928
BseMII	CTCAG	1 cut(s)	926
BseNI	ACTGG	1 cut(s)	162
BseSI	GKGCMC	1 cut(s)	300
BseXI	GCAGC	3 cut(s)	589, 897, 930
BseYI	CCCAGC	1 cut(s)	862
BshFI	GGCC	2 cut(s)	101, 161
BshNI	GGYRCC	2 cut(s)	205, 258
BsiHKAI	GWGCWC	2 cut(s)	300, 577
BslI	CCNNNNNNNGG	1 cut(s)	928
BsmAI	GTCTC	1 cut(s)	829
BsmI	GAATGC	1 cut(s)	579
BsnI	GGCC	2 cut(s)	101, 161
Bso31I	GGTCTC	1 cut(s)	829
Bsp119I	TTCGAA	2 cut(s)	230, 626
Bsp1286I	GDGCHC	2 cut(s)	300, 577
Bsp143I	GATC	3 cut(s)	466, 511, 690
Bsp19I	CCATGG	2 cut(s)	102, 803
BspACI	CCGC	3 cut(s)	49, 98, 277
BspANI	GGCC	2 cut(s)	101, 161
BspCNI	CTCAG	1 cut(s)	925
BspLI	GGNNCC	3 cut(s)	207, 260, 692
BspPI	GGATC	3 cut(s)	461, 685, 698
BspT104I	TTCGAA	2 cut(s)	230, 626
BspT107I	GGYRCC	2 cut(s)	205, 258
BspTNI	GGTCTC	1 cut(s)	829
BsrI	ACTGG	1 cut(s)	162
BssECI	CCNNGG	2 cut(s)	102, 803
BssMI	GATC	3 cut(s)	466, 511, 690
BssT1I	CCWWGG	2 cut(s)	102, 803
Bst2UI	CCWGG	1 cut(s)	791
Bst4CI	ACNGT	3 cut(s)	213, 313, 538
BstBAI	YACGTR	1 cut(s)	587
BstBI	TTCGAA	2 cut(s)	230, 626
BstC8I	GCNNGC	3 cut(s)	28, 577, 923
BstDEI	CTNAG	4 cut(s)	135, 515, 671, 912
BstDSI	CCRYGG	2 cut(s)	102, 803
BstENI	CCTNNNNNAGG	1 cut(s)	926
BstF5I	GGATG	2 cut(s)	193, 786
BstHHI	GCGC	1 cut(s)	344
BstKTI	GATC	3 cut(s)	469, 514, 693
BstMAI	GTCTC	1 cut(s)	829
BstMBI	GATC	3 cut(s)	466, 511, 690
BstMWI	GCNNNNNNNGC	2 cut(s)	107, 348
BstNI	CCWGG	1 cut(s)	791
BstSCI	CCNGG	1 cut(s)	789
BstSLI	GKGCMC	1 cut(s)	300
BstV1I	GCAGC	3 cut(s)	589, 897, 930
BstX2I	RGATCY	2 cut(s)	511, 690
BstXI	CCANNNNNNTGG	1 cut(s)	269
BstYI	RGATCY	2 cut(s)	511, 690
BsuRI	GGCC	2 cut(s)	101, 161
BtgI	CCRYGG	2 cut(s)	102, 803
BtsCI	GGATG	2 cut(s)	193, 786
BtsIMutI	CAGTG	2 cut(s)	169, 218
Cac8I	GCNNGC	3 cut(s)	28, 577, 923
CfoI	GCGC	1 cut(s)	344
Csp6I	GTAC	3 cut(s)	389, 542, 552
CviAII	CATG	5 cut(s)	70, 103, 293, 697, 804
CviQI	GTAC	3 cut(s)	389, 542, 552
DdeI	CTNAG	4 cut(s)	135, 515, 671, 912
DpnI	GATC	3 cut(s)	468, 513, 692
DpnII	GATC	3 cut(s)	466, 511, 690
DraI	TTTAAA	1 cut(s)	379
DriI	GACNNNNNGTC	1 cut(s)	901
EaeI	YGGCCR	2 cut(s)	99, 159
Eam1105I	GACNNNNNGTC	1 cut(s)	901
Eco130I	CCWWGG	2 cut(s)	102, 803
Eco31I	GGTCTC	1 cut(s)	829
Eco57I	CTGAAG	1 cut(s)	753
EcoNI	CCTNNNNNAGG	1 cut(s)	926
EcoRI	GAATTC	1 cut(s)	226
EcoRII	CCWGG	1 cut(s)	789
EcoT14I	CCWWGG	2 cut(s)	102, 803
EcoT22I	ATGCAT	1 cut(s)	71
ErhI	CCWWGG	2 cut(s)	102, 803
FaeI	CATG	5 cut(s)	73, 106, 296, 700, 807
FalI	AAGNNNNNCTT	2 cut(s)	425, 457
FatI	CATG	5 cut(s)	69, 102, 292, 696, 803
Fnu4HI	GCNGC	4 cut(s)	99, 603, 886, 919
FokI	GGATG	2 cut(s)	200, 773
Fsp4HI	GCNGC	4 cut(s)	99, 603, 886, 919
FspBI	CTAG	2 cut(s)	327, 926
GlaI	GCGC	1 cut(s)	343
GluI	GCNGC	4 cut(s)	99, 603, 886, 919
GsaI	CCCAGC	1 cut(s)	866
HaeIII	GGCC	2 cut(s)	101, 161
HhaI	GCGC	1 cut(s)	344
Hin1II	CATG	5 cut(s)	73, 106, 296, 700, 807
Hin6I	GCGC	1 cut(s)	342
HinP1I	GCGC	1 cut(s)	342
HindIII	AAGCTT	2 cut(s)	349, 735
HinfI	GANTC	4 cut(s)	155, 615, 902, 951
HphI	GGTGA	2 cut(s)	250, 317
Hpy166II	GTNNAC	1 cut(s)	298
Hpy188I	TCNGA	1 cut(s)	746
Hpy188III	TCNNGA	3 cut(s)	366, 563, 770
Hpy8I	GTNNAC	1 cut(s)	298
HpyAV	CCTTC	5 cut(s)	185, 196, 267, 622, 681
HpyCH4III	ACNGT	3 cut(s)	213, 313, 538
HpyCH4IV	ACGT	1 cut(s)	586
HpyCH4V	TGCA	4 cut(s)	69, 298, 476, 947
HpyF10VI	GCNNNNNNNGC	2 cut(s)	107, 348
HpyF3I	CTNAG	4 cut(s)	135, 515, 671, 912
HpySE526I	ACGT	1 cut(s)	586
Hsp92II	CATG	5 cut(s)	73, 106, 296, 700, 807
HspAI	GCGC	1 cut(s)	342
Kzo9I	GATC	3 cut(s)	466, 511, 690
LmnI	GCTCC	1 cut(s)	420
Lsp1109I	GCAGC	3 cut(s)	589, 897, 930
LweI	GCATC	1 cut(s)	345
MaeI	CTAG	2 cut(s)	327, 926
MaeII	ACGT	1 cut(s)	586
MaeIII	GTNAC	2 cut(s)	238, 437
MalI	GATC	3 cut(s)	468, 513, 692
MboI	GATC	3 cut(s)	466, 511, 690
MboII	GAAGA	2 cut(s)	229, 521
MfeI	CAATTG	2 cut(s)	83, 424
MflI	RGATCY	2 cut(s)	511, 690
MhlI	GDGCHC	2 cut(s)	300, 577
MlyI	GAGTC	2 cut(s)	911, 960
MmeI	TCCRAC	2 cut(s)	250, 398
Mph1103I	ATGCAT	1 cut(s)	71
MroXI	GAANNNNTTC	2 cut(s)	250, 777
MseI	TTAA	3 cut(s)	378, 450, 648
MslI	CAYNNNNRTG	3 cut(s)	211, 303, 701
MspR9I	CCNGG	1 cut(s)	791
MunI	CAATTG	2 cut(s)	83, 424
Mva1269I	GAATGC	1 cut(s)	579
MvaI	CCWGG	1 cut(s)	791
MwoI	GCNNNNNNNGC	2 cut(s)	107, 348
NcoI	CCATGG	2 cut(s)	102, 803
NdeII	GATC	3 cut(s)	466, 511, 690
NlaIII	CATG	5 cut(s)	73, 106, 296, 700, 807
NlaIV	GGNNCC	3 cut(s)	207, 260, 692
NmuCI	GTSAC	2 cut(s)	238, 437
NsiI	ATGCAT	1 cut(s)	71
NspV	TTCGAA	2 cut(s)	230, 626
OliI	CACNNNNGTG	2 cut(s)	211, 303
PcsI	WCGNNNNNNNCGW	1 cut(s)	583
PctI	GAATGC	1 cut(s)	579
PdmI	GAANNNNTTC	2 cut(s)	250, 777
PfeI	GAWTC	2 cut(s)	155, 615
PkrI	GCNGC	4 cut(s)	100, 604, 887, 920
PleI	GAGTC	2 cut(s)	910, 959
PpsI	GAGTC	2 cut(s)	910, 959
Ppu21I	YACGTR	1 cut(s)	587
Psp6I	CCWGG	1 cut(s)	789
PspFI	CCCAGC	1 cut(s)	862
PspGI	CCWGG	1 cut(s)	789
PspN4I	GGNNCC	3 cut(s)	207, 260, 692
PsrI	GAACNNNNNNTAC	2 cut(s)	765, 797
PsuI	RGATCY	2 cut(s)	511, 690
RsaI	GTAC	3 cut(s)	390, 543, 553
RsaNI	GTAC	3 cut(s)	389, 542, 552
RseI	CAYNNNNRTG	3 cut(s)	211, 303, 701
SaqAI	TTAA	3 cut(s)	378, 450, 648
SatI	GCNGC	4 cut(s)	99, 603, 886, 919
Sau3AI	GATC	3 cut(s)	466, 511, 690
ScaI	AGTACT	1 cut(s)	553
SchI	GAGTC	2 cut(s)	911, 960
ScrFI	CCNGG	1 cut(s)	791
SduI	GDGCHC	2 cut(s)	300, 577
SfaNI	GCATC	1 cut(s)	345
SfuI	TTCGAA	2 cut(s)	230, 626
SmiMI	CAYNNNNRTG	3 cut(s)	211, 303, 701
SmlI	CTYRAG	1 cut(s)	364
SmoI	CTYRAG	1 cut(s)	364
SsiI	CCGC	3 cut(s)	49, 98, 277
SspMI	CTAG	2 cut(s)	327, 926
StyD4I	CCNGG	1 cut(s)	789
StyI	CCWWGG	2 cut(s)	102, 803
TaaI	ACNGT	3 cut(s)	213, 313, 538
TaiI	ACGT	1 cut(s)	589
TaqI	TCGA	3 cut(s)	230, 562, 626
TatI	WGTACW	1 cut(s)	551
TauI	GCSGC	1 cut(s)	101
TfiI	GAWTC	2 cut(s)	155, 615
Tru1I	TTAA	3 cut(s)	378, 450, 648
Tru9I	TTAA	3 cut(s)	378, 450, 648
TscAI	CASTG	2 cut(s)	169, 218
TseFI	GTSAC	2 cut(s)	238, 437
TseI	GCWGC	3 cut(s)	602, 885, 918
Tsp45I	GTSAC	2 cut(s)	238, 437
TspDTI	ATGAA	3 cut(s)	204, 546, 719
TspGWI	ACGGA	1 cut(s)	608
TspRI	CASTG	2 cut(s)	169, 218
VneI	GTGCAC	1 cut(s)	296
XagI	CCTNNNNNAGG	1 cut(s)	926
XapI	RAATTY	2 cut(s)	226, 652
XmnI	GAANNNNTTC	2 cut(s)	250, 777
XspI	CTAG	2 cut(s)	327, 926
ZrmI	AGTACT	1 cut(s)	553
Zsp2I	ATGCAT	1 cut(s)	71

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.