Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0001230

Physical Location & Seq

Genomic Coordinates Reverse (-)

35316402 .. 35322804

Gene Structure 6403 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024379

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1338 bp

ATGGCTATTTCAAGTTTAGGGTTTGCTTGCCAACCCAATTTCAACCTCCGCACTCCCACCTTTCAATGCATTGGCAAGGTTCAATTGAACTTGGTTGCAGCCATGGAGGCGATTGATGAGCAAGAGGGTCGTTCTAAGGACAACAAGACCAATGATTCGGCCAGAGATGGGAAGGCACCACAGTGGAAGAAGCTGAATTTGAAAGAGGTTGGGATTAGTAGTTCTATGATTGACAAGCCGACCCGAAAGGTTTTGAATGTGCTAAAGCGAAAGGGTATATACCTTGTAGGAGGTTGTGTAAGGGATCTTATCTTAAAACGCACAACATTTTCTTGGTGCCAAGTAGTTGGAAGGCGGTTTCCTATATCTCATGTGCACATTGGTGATACGGTAGTGGAGGATTTTATGCGTTGGAGCAATTGTTTGAAGTGTGACTTTACAATTAACGGGTTGATATTTGATCCCTATGCAAGGACAGTGTGTGACTACTTGGGAGGAATAGAAGATCTTAGAAAAGCTAAAGTCCAAACTGTTGTACCAGCAAGTACTTCATTTCGAGAGGATTGTGCAGCCATTAGTAACTTCATTAAACACAGTAAGCAATATAGTTTTAGTGTATTCAATATTGAATATTTAAAGAGCATTGACCAAACCTTTAATCATTCCCTTTTTTCTAACTTGGATAAACTTCTTGCACCTGACAAGCCGTGCCACAGTAGCTTATGGATTGCAATCTTAGCATTGCATAAATCACTCTCCAAACAACCTCGAGATGCGTTGGTGGTTGCTGCATTTACCCTTGCTGTTCACAATGGTGGAGATATGTCAGAAGCAGTGGACATAGCCAGGACTATCACTAAACCACATGACGGTAGCTTTCATGAATTATTGGAACCGAAGAGTTTGGACTCTGAAGCATATAATAAAGAGGGTAAGGATCTTGAGGCATCTTTTAGGCTGGCACTCGATCATATGACTGATCAGCAAATTGTCTCAGAGGCCATGGCAGCGTACCCACAAGCACTGTTTTCTGATCTGGTCAGTACAACCTTTCTCCCTTCCTGTTTGTGTGTACATCATCGTCTTTGCATTTCATCTCAGTTTAAGGAAAGGGCAAGTCTTAATTTATTCGATCTCAATTTGCTGCAAGTATTTATACCATGGGGATTATCTTTGAGGGTCTCCCAGATTTTCAACTGCGTAAAAGTGGGTGGGAAGCTGGGATTTGTGGCAAAGCAAGGCAGCAAGATTGACTATGAGTCATTAGCTCAGGGCAGCCTGCCAGGGGTTCGGCATATTTTTGCAAGAGTCGTGTTTGATACCATCTATCCTCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004652 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006276 GO:0006378 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016740 GO:0016772 GO:0016779 GO:0031123 GO:0031124 GO:0034641 GO:0043170 GO:0043412 GO:0043631 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0070566 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PolyA_pol PolyA_pol_RNAbd

Protein Analysis

446

Amino Acids

49.67

Weight (kDa)

8.68

Isoelectric Point (pI)

38.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001230)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28090 AT1G28090 AT1G28090 AT1G28090 AT1G28090 AT3G48830 AT5G23690
fragaria_vesca	FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09270
malus_domestica	MD06G1133100.v1.1 MD14G1149300.v1.1 MD14G1149500.v1.1
prunus_persica	Prupe.5G144000_v2.0.a1 Prupe.5G144300_v2.0.a1
pyrus_communis	pycom06g12450 pycom14g12410
rosa_chinensis	RchiOBHm_Chr3g0469071 RchiOBHm_Chr7g0189011
rosa_laevigata	RLG00000004641 RLG00000024375 RLG00000024379 RLG00000024383 RLG00000024385
rosa_multiflora	Rmu_sc0000302.1_g000052 Rmu_sc0000326.1_g000001 Rmu_sc0007139.1_g000009 Rmu_sc0016080.1_g000004
rosa_roxburghii	Rroxscaffold_3G00265860
rosa_rugosa	Rorug03G0099300 Rorug06G0495400 Rorug06G0495500
rosa_samantha	Rh3AG148200 Rh3AG148500 Rh3BG171000 Rh3BG171100 Rh3BG171500 Rh7AG100100 Rh7BG102400 Rh7CG104000 Rh7DG102100
rosa_wichuraiana	Rw0G010940 Rw0G014560 Rw0G014590 Rw7G008650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	175, 336
AciI	CCGC	2 cut(s)	49, 355
AclWI	GGATC	3 cut(s)	312, 455, 945
AcoI	YGGCCR	1 cut(s)	159
AcsI	RAATTY	1 cut(s)	196
AcuI	CTGAAG	1 cut(s)	933
AfaI	GTAC	5 cut(s)	537, 547, 1013, 1045, 1074
AfiI	CCNNNNNNNGG	4 cut(s)	168, 471, 869, 1285
AhdI	GACNNNNNGTC	1 cut(s)	1258
AjnI	CCWGG	2 cut(s)	845, 1282
AleI	CACNNNNGTG	3 cut(s)	181, 381, 813
AloI	GAACNNNNNNTCC	2 cut(s)	205, 237
AluBI	AGCT	6 cut(s)	193, 518, 720, 876, 1219, 1268
AluI	AGCT	6 cut(s)	193, 518, 720, 876, 1219, 1268
Alw21I	GWGCWC	1 cut(s)	378
Alw26I	GTCTC	2 cut(s)	997, 1186
Alw44I	GTGCAC	1 cut(s)	374
AlwI	GGATC	3 cut(s)	312, 455, 945
Ama87I	CYCGRG	1 cut(s)	768
AoxI	GGCC	2 cut(s)	159, 999
ApaLI	GTGCAC	1 cut(s)	374
ApeKI	GCWGC	7 cut(s)	98, 569, 788, 1007, 1144, 1242, 1275
ApoI	RAATTY	1 cut(s)	196
ArsI	GACNNNNNNTTYG	2 cut(s)	139, 171
AsuHPI	GGTGA	1 cut(s)	395
AvaI	CYCGRG	1 cut(s)	768
BaeGI	GKGCMC	1 cut(s)	378
BaeI	ACNNNNGTAYC	4 cut(s)	378, 411, 519, 552
BanI	GGYRCC	2 cut(s)	175, 336
Bbv12I	GWGCWC	1 cut(s)	378
BbvI	GCAGC	7 cut(s)	110, 581, 775, 1019, 1131, 1254, 1287
BccI	CCATC	2 cut(s)	161, 1331
BceAI	ACGGC	1 cut(s)	691
BcgI	CGANNNNNNTGC	2 cut(s)	110, 144
BciT130I	CCWGG	2 cut(s)	847, 1284
BclI	TGATCA	1 cut(s)	979
BcoDI	GTCTC	2 cut(s)	997, 1186
BglI	GCCNNNNNGGC	1 cut(s)	107
BglII	AGATCT	1 cut(s)	505
BisI	GCNGC	7 cut(s)	99, 570, 789, 1008, 1145, 1243, 1276
BlsI	GCNGC	7 cut(s)	100, 571, 790, 1009, 1146, 1244, 1277
BmcAI	AGTACT	1 cut(s)	547
Bme1390I	CCNGG	2 cut(s)	847, 1284
BmeRI	GACNNNNNGTC	1 cut(s)	1258
BmeT110I	CYCGRG	1 cut(s)	768
BmiI	GGNNCC	3 cut(s)	177, 338, 894
BmrFI	CCNGG	2 cut(s)	847, 1284
BmsI	GCATC	2 cut(s)	763, 956
Bpu10I	CCTNAGC	1 cut(s)	1269
BpuEI	CTTGAG	1 cut(s)	962
BsaBI	GATNNNNATC	1 cut(s)	731
BsaI	GGTCTC	1 cut(s)	1186
BsaJI	CCNNGG	4 cut(s)	102, 1002, 1160, 1283
BsaXI	ACNNNNNCTCC	4 cut(s)	282, 312, 406, 436
Bsc4I	CCNNNNNNNGG	4 cut(s)	168, 471, 869, 1285
Bse3DI	GCAATG	1 cut(s)	740
Bse8I	GATNNNNATC	1 cut(s)	731
BseBI	CCWGG	2 cut(s)	847, 1284
BseDI	CCNNGG	4 cut(s)	102, 1002, 1160, 1283
BseJI	GATNNNNATC	1 cut(s)	731
BseLI	CCNNNNNNNGG	4 cut(s)	168, 471, 869, 1285
BseMI	GCAATG	1 cut(s)	740
BseMII	CTCAG	3 cut(s)	1008, 1112, 1283
BseSI	GKGCMC	1 cut(s)	378
BseXI	GCAGC	7 cut(s)	110, 581, 775, 1019, 1131, 1254, 1287
BseYI	CCCAGC	1 cut(s)	1219
BsgI	GTGCAG	1 cut(s)	588
BshFI	GGCC	2 cut(s)	161, 1001
BshNI	GGYRCC	2 cut(s)	175, 336
BsiHKAI	GWGCWC	1 cut(s)	378
BsiHKCI	CYCGRG	1 cut(s)	768
BslI	CCNNNNNNNGG	4 cut(s)	168, 471, 869, 1285
BsmAI	GTCTC	2 cut(s)	997, 1186
BsnI	GGCC	2 cut(s)	161, 1001
Bso31I	GGTCTC	1 cut(s)	1186
BsoBI	CYCGRG	1 cut(s)	768
Bsp1286I	GDGCHC	1 cut(s)	378
Bsp1407I	TGTACA	1 cut(s)	1072
Bsp143I	GATC	8 cut(s)	304, 460, 505, 937, 967, 979, 1033, 1132
Bsp19I	CCATGG	3 cut(s)	102, 1002, 1160
BspACI	CCGC	2 cut(s)	49, 355
BspANI	GGCC	2 cut(s)	161, 1001
BspCNI	CTCAG	3 cut(s)	1007, 1111, 1282
BspHI	TCATGA	1 cut(s)	880
BspLI	GGNNCC	3 cut(s)	177, 338, 894
BspPI	GGATC	3 cut(s)	312, 455, 945
BspT107I	GGYRCC	2 cut(s)	175, 336
BspTNI	GGTCTC	1 cut(s)	1186
BsrDI	GCAATG	1 cut(s)	740
BsrGI	TGTACA	1 cut(s)	1072
BssECI	CCNNGG	4 cut(s)	102, 1002, 1160, 1283
BssMI	GATC	8 cut(s)	304, 460, 505, 937, 967, 979, 1033, 1132
BssT1I	CCWWGG	3 cut(s)	102, 1002, 1160
Bst2UI	CCWGG	2 cut(s)	847, 1284
Bst4CI	ACNGT	8 cut(s)	183, 391, 478, 532, 596, 716, 872, 1026
Bst6I	CTCTTC	1 cut(s)	893
BstAUI	TGTACA	1 cut(s)	1072
BstC8I	GCNNGC	3 cut(s)	28, 960, 1280
BstDEI	CTNAG	6 cut(s)	135, 509, 736, 994, 1098, 1269
BstDSI	CCRYGG	3 cut(s)	102, 1002, 1160
BstENI	CCTNNNNNAGG	1 cut(s)	469
BstKTI	GATC	8 cut(s)	307, 463, 508, 940, 970, 982, 1036, 1135
BstMAI	GTCTC	2 cut(s)	997, 1186
BstMBI	GATC	8 cut(s)	304, 460, 505, 937, 967, 979, 1033, 1132
BstMWI	GCNNNNNNNGC	4 cut(s)	107, 717, 737, 1007
BstNI	CCWGG	2 cut(s)	847, 1284
BstSCI	CCNGG	2 cut(s)	845, 1282
BstSLI	GKGCMC	1 cut(s)	378
BstV1I	GCAGC	7 cut(s)	110, 581, 775, 1019, 1131, 1254, 1287
BstX2I	RGATCY	3 cut(s)	304, 505, 937
BstXI	CCANNNNNNTGG	1 cut(s)	347
BstYI	RGATCY	3 cut(s)	304, 505, 937
BsuRI	GGCC	2 cut(s)	161, 1001
BtgI	CCRYGG	3 cut(s)	102, 1002, 1160
BtsI	GCAGTG	1 cut(s)	840
BtsIMutI	CAGTG	4 cut(s)	188, 483, 840, 1022
Cac8I	GCNNGC	3 cut(s)	28, 960, 1280
CciI	TCATGA	1 cut(s)	880
Csp6I	GTAC	5 cut(s)	536, 546, 1012, 1044, 1073
CviAII	CATG	6 cut(s)	103, 371, 866, 881, 1003, 1161
CviQI	GTAC	5 cut(s)	536, 546, 1012, 1044, 1073
DdeI	CTNAG	6 cut(s)	135, 509, 736, 994, 1098, 1269
DpnI	GATC	8 cut(s)	306, 462, 507, 939, 969, 981, 1035, 1134
DpnII	GATC	8 cut(s)	304, 460, 505, 937, 967, 979, 1033, 1132
DraI	TTTAAA	1 cut(s)	636
DriI	GACNNNNNGTC	1 cut(s)	1258
EaeI	YGGCCR	1 cut(s)	159
Eam1104I	CTCTTC	1 cut(s)	893
Eam1105I	GACNNNNNGTC	1 cut(s)	1258
EarI	CTCTTC	1 cut(s)	893
Eco130I	CCWWGG	3 cut(s)	102, 1002, 1160
Eco31I	GGTCTC	1 cut(s)	1186
Eco57I	CTGAAG	1 cut(s)	933
Eco88I	CYCGRG	1 cut(s)	768
EcoNI	CCTNNNNNAGG	1 cut(s)	469
EcoRII	CCWGG	2 cut(s)	845, 1282
EcoT14I	CCWWGG	3 cut(s)	102, 1002, 1160
EcoT22I	ATGCAT	1 cut(s)	71
ErhI	CCWWGG	3 cut(s)	102, 1002, 1160
FaeI	CATG	6 cut(s)	106, 374, 869, 884, 1006, 1164
FalI	AAGNNNNNCTT	2 cut(s)	419, 451
FatI	CATG	6 cut(s)	102, 370, 865, 880, 1002, 1160
FauNDI	CATATG	1 cut(s)	972
FbaI	TGATCA	1 cut(s)	979
Fnu4HI	GCNGC	7 cut(s)	99, 570, 789, 1008, 1145, 1243, 1276
Fsp4HI	GCNGC	7 cut(s)	99, 570, 789, 1008, 1145, 1243, 1276
GluI	GCNGC	7 cut(s)	99, 570, 789, 1008, 1145, 1243, 1276
GsaI	CCCAGC	1 cut(s)	1223
HaeIII	GGCC	2 cut(s)	161, 1001
Hin1II	CATG	6 cut(s)	106, 374, 869, 884, 1006, 1164
HinfI	GANTC	4 cut(s)	155, 908, 1259, 1308
HphI	GGTGA	1 cut(s)	395
Hpy166II	GTNNAC	4 cut(s)	376, 808, 838, 1073
Hpy188I	TCNGA	4 cut(s)	829, 913, 997, 1033
Hpy188III	TCNNGA	4 cut(s)	557, 770, 881, 941
Hpy8I	GTNNAC	4 cut(s)	376, 808, 838, 1073
HpyAV	CCTTC	3 cut(s)	166, 345, 1068
HpyCH4III	ACNGT	8 cut(s)	183, 391, 478, 532, 596, 716, 872, 1026
HpyF10VI	GCNNNNNNNGC	4 cut(s)	107, 717, 737, 1007
HpyF3I	CTNAG	6 cut(s)	135, 509, 736, 994, 1098, 1269
Hsp92II	CATG	6 cut(s)	106, 374, 869, 884, 1006, 1164
Ksp22I	TGATCA	1 cut(s)	979
Kzo9I	GATC	8 cut(s)	304, 460, 505, 937, 967, 979, 1033, 1132
LmnI	GCTCC	1 cut(s)	414
Lsp1109I	GCAGC	7 cut(s)	110, 581, 775, 1019, 1131, 1254, 1287
LweI	GCATC	2 cut(s)	763, 956
MaeIII	GTNAC	3 cut(s)	431, 482, 578
MalI	GATC	8 cut(s)	306, 462, 507, 939, 969, 981, 1035, 1134
MboI	GATC	8 cut(s)	304, 460, 505, 937, 967, 979, 1033, 1132
MboII	GAAGA	3 cut(s)	199, 515, 910
MfeI	CAATTG	2 cut(s)	83, 418
MflI	RGATCY	3 cut(s)	304, 505, 937
MhlI	GDGCHC	1 cut(s)	378
MluCI	AATT	9 cut(s)	37, 83, 196, 418, 441, 884, 987, 1123, 1138
MlyI	GAGTC	3 cut(s)	902, 1268, 1317
MmeI	TCCRAC	2 cut(s)	328, 392
Mph1103I	ATGCAT	1 cut(s)	71
MseI	TTAA	7 cut(s)	314, 444, 588, 635, 657, 1104, 1122
MslI	CAYNNNNRTG	3 cut(s)	181, 381, 813
MspR9I	CCNGG	2 cut(s)	847, 1284
MunI	CAATTG	2 cut(s)	83, 418
MvaI	CCWGG	2 cut(s)	847, 1284
MwoI	GCNNNNNNNGC	4 cut(s)	107, 717, 737, 1007
NcoI	CCATGG	3 cut(s)	102, 1002, 1160
NdeI	CATATG	1 cut(s)	972
NdeII	GATC	8 cut(s)	304, 460, 505, 937, 967, 979, 1033, 1132
NlaIII	CATG	6 cut(s)	106, 374, 869, 884, 1006, 1164
NlaIV	GGNNCC	3 cut(s)	177, 338, 894
NmuCI	GTSAC	2 cut(s)	431, 482
NsiI	ATGCAT	1 cut(s)	71
OliI	CACNNNNGTG	3 cut(s)	181, 381, 813
PaeR7I	CTCGAG	1 cut(s)	768
PagI	TCATGA	1 cut(s)	880
PfeI	GAWTC	1 cut(s)	155
PkrI	GCNGC	7 cut(s)	100, 571, 790, 1009, 1146, 1244, 1277
PleI	GAGTC	3 cut(s)	902, 1267, 1316
PpsI	GAGTC	3 cut(s)	902, 1267, 1316
Psp6I	CCWGG	2 cut(s)	845, 1282
PspFI	CCCAGC	1 cut(s)	1219
PspGI	CCWGG	2 cut(s)	845, 1282
PspN4I	GGNNCC	3 cut(s)	177, 338, 894
PsuI	RGATCY	3 cut(s)	304, 505, 937
RsaI	GTAC	5 cut(s)	537, 547, 1013, 1045, 1074
RsaNI	GTAC	5 cut(s)	536, 546, 1012, 1044, 1073
RseI	CAYNNNNRTG	3 cut(s)	181, 381, 813
SaqAI	TTAA	7 cut(s)	314, 444, 588, 635, 657, 1104, 1122
SatI	GCNGC	7 cut(s)	99, 570, 789, 1008, 1145, 1243, 1276
Sau3AI	GATC	8 cut(s)	304, 460, 505, 937, 967, 979, 1033, 1132
ScaI	AGTACT	1 cut(s)	547
SchI	GAGTC	3 cut(s)	902, 1268, 1317
ScrFI	CCNGG	2 cut(s)	847, 1284
SduI	GDGCHC	1 cut(s)	378
SfaNI	GCATC	2 cut(s)	763, 956
Sfr274I	CTCGAG	1 cut(s)	768
SlaI	CTCGAG	1 cut(s)	768
SmiMI	CAYNNNNRTG	3 cut(s)	181, 381, 813
SmlI	CTYRAG	2 cut(s)	768, 941
SmoI	CTYRAG	2 cut(s)	768, 941
Sse9I	AATT	9 cut(s)	37, 83, 196, 418, 441, 884, 987, 1123, 1138
SsiI	CCGC	2 cut(s)	49, 355
SspI	AATATT	2 cut(s)	625, 632
StyD4I	CCNGG	2 cut(s)	845, 1282
StyI	CCWWGG	3 cut(s)	102, 1002, 1160
TaaI	ACNGT	8 cut(s)	183, 391, 478, 532, 596, 716, 872, 1026
TaqI	TCGA	4 cut(s)	556, 769, 966, 1131
TasI	AATT	9 cut(s)	37, 83, 196, 418, 441, 884, 987, 1123, 1138
TatI	WGTACW	3 cut(s)	545, 1043, 1072
TfiI	GAWTC	1 cut(s)	155
Tru1I	TTAA	7 cut(s)	314, 444, 588, 635, 657, 1104, 1122
Tru9I	TTAA	7 cut(s)	314, 444, 588, 635, 657, 1104, 1122
TscAI	CASTG	4 cut(s)	188, 483, 840, 1029
TseFI	GTSAC	2 cut(s)	431, 482
TseI	GCWGC	7 cut(s)	98, 569, 788, 1007, 1144, 1242, 1275
Tsp45I	GTSAC	2 cut(s)	431, 482
TspDTI	ATGAA	5 cut(s)	540, 574, 869, 897, 1083
TspRI	CASTG	4 cut(s)	188, 483, 840, 1029
VneI	GTGCAC	1 cut(s)	374
XagI	CCTNNNNNAGG	1 cut(s)	469
XapI	RAATTY	1 cut(s)	196
XhoI	CTCGAG	1 cut(s)	768
ZrmI	AGTACT	1 cut(s)	547
Zsp2I	ATGCAT	1 cut(s)	71

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.