Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0001230

Physical Location & Seq

Genomic Coordinates Reverse (-)

7773587 .. 7774365

Gene Structure 779 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0099300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGGCAAGCTCTGGAGTAGTTAAGGTGGTTTGCGTAGTGGTGTTGTTCATGGCGGCACTGTTTTTGGGTGGCGCAAAAGCATTCTTACAATGCCCTAAATTAGTCGATGATCTGAAGCCATGCATTCCCTACCTCAAGGAAGGTGGGATTCCCATGGCGGTATGCTGCAACGGGATTAAGACCATCTACGACAAAGATCTGGCCACTCTCCAGGACATTGCTAAGTGTTTGGAGAAATTGATAACTGACGCATTCACCGGTACTTTTTCCAGACGTGCATCAGGGCTTCCCAGCATTTGCGGGATCCTAGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004652 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006276 GO:0006378 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016740 GO:0016772 GO:0016779 GO:0031123 GO:0031124 GO:0034641 GO:0043170 GO:0043412 GO:0043631 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0070566 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PolyA_pol PolyA_pol_RNAbd

Protein Analysis

104

Amino Acids

10.96

Weight (kDa)

8.5

Isoelectric Point (pI)

27.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tryp_alpha_amyl	PF00234	31 - 102	1e-05	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001230)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28090 AT1G28090 AT1G28090 AT1G28090 AT1G28090 AT3G48830 AT5G23690
fragaria_vesca	FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09270
malus_domestica	MD06G1133100.v1.1 MD14G1149300.v1.1 MD14G1149500.v1.1
prunus_persica	Prupe.5G144000_v2.0.a1 Prupe.5G144300_v2.0.a1
pyrus_communis	pycom06g12450 pycom14g12410
rosa_chinensis	RchiOBHm_Chr3g0469071 RchiOBHm_Chr7g0189011
rosa_laevigata	RLG00000004641 RLG00000024375 RLG00000024379 RLG00000024383 RLG00000024385
rosa_multiflora	Rmu_sc0000302.1_g000052 Rmu_sc0000326.1_g000001 Rmu_sc0007139.1_g000009 Rmu_sc0016080.1_g000004
rosa_roxburghii	Rroxscaffold_3G00265860
rosa_rugosa	Rorug03G0099300 Rorug06G0495400 Rorug06G0495500
rosa_samantha	Rh3AG148200 Rh3AG148500 Rh3BG171000 Rh3BG171100 Rh3BG171500 Rh7AG100100 Rh7BG102400 Rh7CG104000 Rh7DG102100
rosa_wichuraiana	Rw0G010940 Rw0G014560 Rw0G014590 Rw7G008650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	53, 158, 300
AclWI	GGATC	2 cut(s)	298, 311
AcoI	YGGCCR	1 cut(s)	201
AcuI	CTGAAG	1 cut(s)	134
AfaI	GTAC	1 cut(s)	262
AgeI	ACCGGT	1 cut(s)	257
AjiI	CACGTC	1 cut(s)	275
AjnI	CCWGG	1 cut(s)	210
AluBI	AGCT	1 cut(s)	9
AluI	AGCT	1 cut(s)	9
AlwI	GGATC	2 cut(s)	298, 311
AoxI	GGCC	1 cut(s)	201
ApeKI	GCWGC	1 cut(s)	165
AsiGI	ACCGGT	1 cut(s)	257
AspA2I	CCTAGG	1 cut(s)	307
AspLEI	GCGC	1 cut(s)	74
AsuHPI	GGTGA	1 cut(s)	247
AvrII	CCTAGG	1 cut(s)	307
BalI	TGGCCA	1 cut(s)	203
BamHI	GGATCC	1 cut(s)	303
BbvI	GCAGC	1 cut(s)	152
BccI	CCATC	1 cut(s)	191
BciT130I	CCWGG	1 cut(s)	212
BfaI	CTAG	1 cut(s)	308
BglII	AGATCT	1 cut(s)	196
BisI	GCNGC	2 cut(s)	54, 166
BlnI	CCTAGG	1 cut(s)	307
BlsI	GCNGC	2 cut(s)	55, 167
Bme1390I	CCNGG	1 cut(s)	212
BmgBI	CACGTC	1 cut(s)	275
BmiI	GGNNCC	1 cut(s)	305
BmrFI	CCNGG	1 cut(s)	212
BmsI	GCATC	1 cut(s)	287
BpmI	CTGGAG	2 cut(s)	33, 194
BpuEI	CTTGAG	1 cut(s)	119
BsaJI	CCNNGG	2 cut(s)	153, 307
BsaWI	WCCGGW	1 cut(s)	257
Bse118I	RCCGGY	1 cut(s)	257
Bse3DI	GCAATG	1 cut(s)	216
BseBI	CCWGG	1 cut(s)	212
BseDI	CCNNGG	2 cut(s)	153, 307
BseMI	GCAATG	1 cut(s)	216
BseXI	GCAGC	1 cut(s)	152
BseYI	CCCAGC	1 cut(s)	290
BshFI	GGCC	1 cut(s)	203
BshTI	ACCGGT	1 cut(s)	257
BsiSI	CCGG	1 cut(s)	258
BsmI	GAATGC	3 cut(s)	80, 123, 251
BsnI	GGCC	1 cut(s)	203
Bsp143I	GATC	3 cut(s)	109, 196, 303
Bsp19I	CCATGG	1 cut(s)	153
BspACI	CCGC	3 cut(s)	53, 158, 300
BspANI	GGCC	1 cut(s)	203
BspLI	GGNNCC	1 cut(s)	305
BspPI	GGATC	2 cut(s)	298, 311
BsrDI	GCAATG	1 cut(s)	216
BsrFI	RCCGGY	1 cut(s)	257
BssAI	RCCGGY	1 cut(s)	257
BssECI	CCNNGG	2 cut(s)	153, 307
BssMI	GATC	3 cut(s)	109, 196, 303
BssT1I	CCWWGG	2 cut(s)	153, 307
Bst2UI	CCWGG	1 cut(s)	212
Bst4CI	ACNGT	1 cut(s)	60
BstC8I	GCNNGC	1 cut(s)	7
BstDEI	CTNAG	1 cut(s)	222
BstDSI	CCRYGG	1 cut(s)	153
BstHHI	GCGC	1 cut(s)	74
BstKTI	GATC	3 cut(s)	112, 199, 306
BstMBI	GATC	3 cut(s)	109, 196, 303
BstNI	CCWGG	1 cut(s)	212
BstSCI	CCNGG	1 cut(s)	210
BstV1I	GCAGC	1 cut(s)	152
BstX2I	RGATCY	2 cut(s)	196, 303
BstYI	RGATCY	2 cut(s)	196, 303
BsuRI	GGCC	1 cut(s)	203
BtgI	CCRYGG	1 cut(s)	153
BtrI	CACGTC	1 cut(s)	275
BtsIMutI	CAGTG	1 cut(s)	56
Cac8I	GCNNGC	1 cut(s)	7
CfoI	GCGC	1 cut(s)	74
Cfr10I	RCCGGY	1 cut(s)	257
CseI	GACGC	1 cut(s)	257
Csp6I	GTAC	1 cut(s)	261
CspAI	ACCGGT	1 cut(s)	257
CspCI	CAANNNNNGTGG	2 cut(s)	124, 159
CviAII	CATG	3 cut(s)	49, 120, 154
CviJI	RGCY	5 cut(s)	9, 118, 203, 286, 312
CviKI_1	RGCY	5 cut(s)	9, 118, 203, 286, 312
CviQI	GTAC	1 cut(s)	261
DdeI	CTNAG	1 cut(s)	222
DpnI	GATC	3 cut(s)	111, 198, 305
DpnII	GATC	3 cut(s)	109, 196, 303
EaeI	YGGCCR	1 cut(s)	201
Eco130I	CCWWGG	2 cut(s)	153, 307
Eco57I	CTGAAG	1 cut(s)	134
EcoRII	CCWGG	1 cut(s)	210
EcoT14I	CCWWGG	2 cut(s)	153, 307
EcoT22I	ATGCAT	1 cut(s)	125
ErhI	CCWWGG	2 cut(s)	153, 307
FaeI	CATG	3 cut(s)	52, 123, 157
FaiI	YATR	4 cut(s)	50, 121, 155, 163
FatI	CATG	3 cut(s)	48, 119, 153
FauI	CCCGC	1 cut(s)	293
Fnu4HI	GCNGC	2 cut(s)	54, 166
Fsp4HI	GCNGC	2 cut(s)	54, 166
FspBI	CTAG	1 cut(s)	308
GlaI	GCGC	1 cut(s)	73
GluI	GCNGC	2 cut(s)	54, 166
GsaI	CCCAGC	1 cut(s)	294
GsuI	CTGGAG	2 cut(s)	33, 194
HaeIII	GGCC	1 cut(s)	203
HapII	CCGG	1 cut(s)	258
HgaI	GACGC	1 cut(s)	257
HhaI	GCGC	1 cut(s)	74
Hin1II	CATG	3 cut(s)	52, 123, 157
Hin6I	GCGC	1 cut(s)	72
HinP1I	GCGC	1 cut(s)	72
HinfI	GANTC	1 cut(s)	148
HpaII	CCGG	1 cut(s)	258
HphI	GGTGA	1 cut(s)	247
Hpy188I	TCNGA	1 cut(s)	114
Hpy188III	TCNNGA	2 cut(s)	12, 270
HpyAV	CCTTC	1 cut(s)	134
HpyCH4III	ACNGT	1 cut(s)	60
HpyCH4IV	ACGT	1 cut(s)	274
HpyCH4V	TGCA	3 cut(s)	123, 168, 278
HpyF3I	CTNAG	1 cut(s)	222
HpySE526I	ACGT	1 cut(s)	274
Hsp92II	CATG	3 cut(s)	52, 123, 157
HspAI	GCGC	1 cut(s)	72
Kzo9I	GATC	3 cut(s)	109, 196, 303
LpnPI	CCDG	7 cut(s)	185, 197, 224, 267, 271, 283, 304
Lsp1109I	GCAGC	1 cut(s)	152
LweI	GCATC	1 cut(s)	287
MaeI	CTAG	1 cut(s)	308
MaeII	ACGT	1 cut(s)	274
MalI	GATC	3 cut(s)	111, 198, 305
MboI	GATC	3 cut(s)	109, 196, 303
MflI	RGATCY	2 cut(s)	196, 303
MlsI	TGGCCA	1 cut(s)	203
MluCI	AATT	2 cut(s)	98, 236
MluNI	TGGCCA	1 cut(s)	203
MnlI	CCTC	1 cut(s)	143
Mox20I	TGGCCA	1 cut(s)	203
Mph1103I	ATGCAT	1 cut(s)	125
MscI	TGGCCA	1 cut(s)	203
MseI	TTAA	2 cut(s)	21, 177
Msp20I	TGGCCA	1 cut(s)	203
MspI	CCGG	1 cut(s)	258
MspR9I	CCNGG	1 cut(s)	212
Mva1269I	GAATGC	3 cut(s)	80, 123, 251
MvaI	CCWGG	1 cut(s)	212
NcoI	CCATGG	1 cut(s)	153
NdeII	GATC	3 cut(s)	109, 196, 303
NlaIII	CATG	3 cut(s)	52, 123, 157
NlaIV	GGNNCC	1 cut(s)	305
NsiI	ATGCAT	1 cut(s)	125
PctI	GAATGC	3 cut(s)	80, 123, 251
PfeI	GAWTC	1 cut(s)	148
PfoI	TCCNGGA	1 cut(s)	210
PinAI	ACCGGT	1 cut(s)	257
PkrI	GCNGC	2 cut(s)	55, 167
Psp6I	CCWGG	1 cut(s)	210
PspFI	CCCAGC	1 cut(s)	290
PspGI	CCWGG	1 cut(s)	210
PspN4I	GGNNCC	1 cut(s)	305
PsuI	RGATCY	2 cut(s)	196, 303
RsaI	GTAC	1 cut(s)	262
RsaNI	GTAC	1 cut(s)	261
SaqAI	TTAA	2 cut(s)	21, 177
SatI	GCNGC	2 cut(s)	54, 166
Sau3AI	GATC	3 cut(s)	109, 196, 303
ScrFI	CCNGG	1 cut(s)	212
SetI	ASST	5 cut(s)	11, 27, 135, 145, 277
SfaNI	GCATC	1 cut(s)	287
SmlI	CTYRAG	1 cut(s)	134
SmoI	CTYRAG	1 cut(s)	134
Sse9I	AATT	2 cut(s)	98, 236
SsiI	CCGC	3 cut(s)	53, 158, 300
SspMI	CTAG	1 cut(s)	308
StyD4I	CCNGG	1 cut(s)	210
StyI	CCWWGG	2 cut(s)	153, 307
TaaI	ACNGT	1 cut(s)	60
TaiI	ACGT	1 cut(s)	277
TaqI	TCGA	1 cut(s)	105
TasI	AATT	2 cut(s)	98, 236
TauI	GCSGC	1 cut(s)	56
TfiI	GAWTC	1 cut(s)	148
Tru1I	TTAA	2 cut(s)	21, 177
Tru9I	TTAA	2 cut(s)	21, 177
TscAI	CASTG	1 cut(s)	63
TseI	GCWGC	1 cut(s)	165
TspDTI	ATGAA	1 cut(s)	37
TspRI	CASTG	1 cut(s)	63
XmaJI	CCTAGG	1 cut(s)	307
XspI	CTAG	1 cut(s)	308
Zsp2I	ATGCAT	1 cut(s)	125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.