AT3G49940

lob domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0003322
Physical Location & Seq
Forward (+)
18514266 .. 18516131
1866 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G49940.1

Sequence Viewer

Length: 744 bp
ATGAGTTGCAATGGTTGTCGAGTTCTACGAAAAGGTTGCAGTGAGAATTGCATCCTCCGTCCATGTATTCAATGGATCGAATCACCTGAAGCTCAAGGCCACGCCACCGTCTTCGTCGCTAAGTTCTTCGGCCGTGCCGGTTTAATGTCTTTCATCTCCGCCGTACCGGAATCTCAATGCCCTGCTTTGTTTCAGTCTTTGCTATACGAAGCTTGTGGGAGAACTGTGAATCCGGTGAACGGAGCCGTCGGATTGTTGTGGACGGGGAATTGGAATGTTTGTCAAGCGGCGGTTGAGACGGTGCTTCGTGGTGGTTCTTTAAAACCAATACCGGAGCTTCTTAACGGCGGTGGATTCGCCGGGTTTCCGTCTCCTACTTCCGACGAAGCTTCGGAGATCTGTACGGAAATGTTGAATCTACGAAAAGCTGATGATTCCGGTGATCGGAACATTTATCATCACTGCCGATTCTCAAGCTCTAGATCTAGATCAAGATCAACAGCTTCTCCGCCGAAACGGAAACGATTATCGTCGGAACAACAACCTTCGTCGGAGCTTGATCTCTCTCTTATTCCTATTTATCCGATTAAAACCTTGCCGTTTAAGGAAGATACACCGTCGATGTACTCGGAGGAGTCTGTTACCACGGTTTCGTTTCAAAACAACAACGCCGGTGATCGGTACGTACGCTGCGGCGGAGGAGGAGGAGGAGCAACGACAAAGTTGCTCAATCTCTTCGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009965 GO:0010016 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0060776 GO:0099402 GO:1905392
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

247

Amino Acids

26.72

Weight (kDa)

8.29

Isoelectric Point (pI)

68.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 2 - 100 1.2e-24 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 7 cut(s) 159, 287, 290, 348, 509, 693, 696
AclWI GGATC 1 cut(s) 83
AcoI YGGCCR 1 cut(s) 130
AcuI CTGAAG 1 cut(s) 108
AfaI GTAC 5 cut(s) 165, 403, 626, 683, 687
AfiI CCNNNNNNNGG 3 cut(s) 239, 444, 678
AgsI TTSAA 3 cut(s) 71, 415, 659
AloI GAACNNNNNNTCC 2 cut(s) 214, 246
AluBI AGCT 8 cut(s) 92, 212, 337, 389, 428, 477, 503, 556
AluI AGCT 8 cut(s) 92, 212, 337, 389, 428, 477, 503, 556
Alw26I GTCTC 2 cut(s) 290, 375
AlwI GGATC 1 cut(s) 83
AoxI GGCC 2 cut(s) 97, 130
ApeKI GCWGC 1 cut(s) 690
AsuC2I CCSGG 1 cut(s) 361
AsuHPI GGTGA 4 cut(s) 75, 247, 452, 686
BbsI GAAGAC 1 cut(s) 103
BbvI GCAGC 1 cut(s) 677
BceAI ACGGC 5 cut(s) 117, 146, 230, 361, 583
BcgI CGANNNNNNTGC 4 cut(s) 18, 52, 706, 740
BcnI CCSGG 1 cut(s) 361
BcoDI GTCTC 2 cut(s) 290, 375
BfaI CTAG 2 cut(s) 480, 486
BglII AGATCT 2 cut(s) 396, 482
BisI GCNGC 3 cut(s) 288, 691, 694
BlsI GCNGC 3 cut(s) 289, 692, 695
Bme1390I CCNGG 1 cut(s) 361
BmiI GGNNCC 1 cut(s) 244
BmrFI CCNGG 1 cut(s) 361
BmsI GCATC 1 cut(s) 60
BpiI GAAGAC 1 cut(s) 103
BpuEI CTTGAG 2 cut(s) 78, 457
BpuMI CCSGG 1 cut(s) 361
BsaAI YACGTR 1 cut(s) 685
BsaBI GATNNNNATC 2 cut(s) 487, 493
BsaJI CCNNGG 1 cut(s) 645
BsaWI WCCGGW 4 cut(s) 166, 232, 331, 437
BsaXI ACNNNNNCTCC 2 cut(s) 490, 520
Bsc4I CCNNNNNNNGG 3 cut(s) 239, 444, 678
Bse118I RCCGGY 2 cut(s) 137, 671
Bse3DI GCAATG 1 cut(s) 16
Bse8I GATNNNNATC 2 cut(s) 487, 493
BseDI CCNNGG 1 cut(s) 645
BseGI GGATG 1 cut(s) 51
BseJI GATNNNNATC 2 cut(s) 487, 493
BseLI CCNNNNNNNGG 3 cut(s) 239, 444, 678
BseMI GCAATG 1 cut(s) 16
BseRI GAGGAG 5 cut(s) 647, 714, 717, 720, 723
BseX3I CGGCCG 1 cut(s) 130
BseXI GCAGC 1 cut(s) 677
Bsh1285I CGRYCG 1 cut(s) 133
BshFI GGCC 2 cut(s) 99, 132
BsiEI CGRYCG 1 cut(s) 133
BsiSI CCGG 7 cut(s) 138, 167, 233, 332, 360, 438, 672
BsiWI CGTACG 1 cut(s) 685
BslI CCNNNNNNNGG 3 cut(s) 239, 444, 678
BsmAI GTCTC 2 cut(s) 290, 375
BsmBI CGTCTC 2 cut(s) 290, 375
BsnI GGCC 2 cut(s) 99, 132
Bsp143I GATC 8 cut(s) 75, 396, 442, 482, 488, 494, 559, 676
BspACI CCGC 7 cut(s) 159, 287, 290, 348, 509, 693, 696
BspANI GGCC 2 cut(s) 99, 132
BspLI GGNNCC 1 cut(s) 244
BspPI GGATC 1 cut(s) 83
BsrDI GCAATG 1 cut(s) 16
BsrFI RCCGGY 2 cut(s) 137, 671
BssAI RCCGGY 2 cut(s) 137, 671
BssECI CCNNGG 1 cut(s) 645
BssMI GATC 8 cut(s) 75, 396, 442, 482, 488, 494, 559, 676
Bst4CI ACNGT 5 cut(s) 109, 226, 301, 618, 649
Bst6I CTCTTC 1 cut(s) 740
BstBAI YACGTR 1 cut(s) 685
BstDEI CTNAG 1 cut(s) 120
BstDSI CCRYGG 1 cut(s) 645
BstF5I GGATG 1 cut(s) 51
BstKTI GATC 8 cut(s) 78, 399, 445, 485, 491, 497, 562, 679
BstMAI GTCTC 2 cut(s) 290, 375
BstMBI GATC 8 cut(s) 75, 396, 442, 482, 488, 494, 559, 676
BstMCI CGRYCG 1 cut(s) 133
BstSCI CCNGG 1 cut(s) 359
BstSNI TACGTA 1 cut(s) 685
BstV1I GCAGC 1 cut(s) 677
BstV2I GAAGAC 1 cut(s) 103
BstX2I RGATCY 2 cut(s) 396, 482
BstYI RGATCY 2 cut(s) 396, 482
BstZI CGGCCG 1 cut(s) 130
BsuRI GGCC 2 cut(s) 99, 132
BtgI CCRYGG 1 cut(s) 645
BtsCI GGATG 1 cut(s) 51
BtsI GCAGTG 2 cut(s) 46, 460
BtsIMutI CAGTG 2 cut(s) 46, 460
Cfr10I RCCGGY 2 cut(s) 137, 671
Csp6I GTAC 5 cut(s) 164, 402, 625, 682, 686
CviAII CATG 1 cut(s) 63
CviQI GTAC 5 cut(s) 164, 402, 625, 682, 686
DdeI CTNAG 1 cut(s) 120
DpnI GATC 8 cut(s) 77, 398, 444, 484, 490, 496, 561, 678
DpnII GATC 8 cut(s) 75, 396, 442, 482, 488, 494, 559, 676
DraI TTTAAA 1 cut(s) 321
EaeI YGGCCR 1 cut(s) 130
EagI CGGCCG 1 cut(s) 130
Eam1104I CTCTTC 1 cut(s) 740
EarI CTCTTC 1 cut(s) 740
EciI GGCGGA 3 cut(s) 148, 498, 711
EclXI CGGCCG 1 cut(s) 130
Eco105I TACGTA 1 cut(s) 685
Eco52I CGGCCG 1 cut(s) 130
Eco57I CTGAAG 1 cut(s) 108
Esp3I CGTCTC 2 cut(s) 290, 375
FaeI CATG 1 cut(s) 66
FaiI YATR 2 cut(s) 64, 205
FatI CATG 1 cut(s) 62
Fnu4HI GCNGC 3 cut(s) 288, 691, 694
FokI GGATG 1 cut(s) 38
Fsp4HI GCNGC 3 cut(s) 288, 691, 694
FspBI CTAG 2 cut(s) 480, 486
GluI GCNGC 3 cut(s) 288, 691, 694
HaeIII GGCC 2 cut(s) 99, 132
HapII CCGG 7 cut(s) 138, 167, 233, 332, 360, 438, 672
Hin1II CATG 1 cut(s) 66
HindIII AAGCTT 2 cut(s) 210, 387
HinfI GANTC 8 cut(s) 80, 170, 229, 354, 415, 434, 468, 635
HpaII CCGG 7 cut(s) 138, 167, 233, 332, 360, 438, 672
HphI GGTGA 4 cut(s) 75, 247, 452, 686
Hpy166II GTNNAC 2 cut(s) 238, 261
Hpy188I TCNGA 8 cut(s) 251, 382, 394, 447, 535, 553, 585, 631
Hpy188III TCNNGA 3 cut(s) 480, 486, 492
Hpy8I GTNNAC 2 cut(s) 238, 261
Hpy99I CGWCG 6 cut(s) 119, 251, 386, 535, 553, 622
HpyAV CCTTC 1 cut(s) 555
HpyCH4III ACNGT 5 cut(s) 109, 226, 301, 618, 649
HpyCH4IV ACGT 1 cut(s) 684
HpyCH4V TGCA 3 cut(s) 9, 39, 51
HpyF3I CTNAG 1 cut(s) 120
HpySE526I ACGT 1 cut(s) 684
Hsp92II CATG 1 cut(s) 66
Kzo9I GATC 8 cut(s) 75, 396, 442, 482, 488, 494, 559, 676
LmnI GCTCC 4 cut(s) 242, 334, 553, 710
LpnPI CCDG 9 cut(s) 99, 151, 180, 195, 246, 345, 373, 451, 685
Lsp1109I GCAGC 1 cut(s) 677
LweI GCATC 1 cut(s) 60
MaeI CTAG 2 cut(s) 480, 486
MaeII ACGT 1 cut(s) 684
MaeIII GTNAC 1 cut(s) 640
MalI GATC 8 cut(s) 77, 398, 444, 484, 490, 496, 561, 678
MboI GATC 8 cut(s) 75, 396, 442, 482, 488, 494, 559, 676
MboII GAAGA 4 cut(s) 103, 118, 620, 727
MflI RGATCY 2 cut(s) 396, 482
MluCI AATT 2 cut(s) 46, 268
MlyI GAGTC 1 cut(s) 644
MmeI TCCRAC 4 cut(s) 229, 405, 513, 531
MnlI CCTC 6 cut(s) 65, 625, 692, 695, 698, 701
MseI TTAA 5 cut(s) 143, 320, 342, 588, 603
MspI CCGG 7 cut(s) 138, 167, 233, 332, 360, 438, 672
MspR9I CCNGG 1 cut(s) 361
NciI CCSGG 1 cut(s) 361
NdeII GATC 8 cut(s) 75, 396, 442, 482, 488, 494, 559, 676
NlaIII CATG 1 cut(s) 66
NlaIV GGNNCC 1 cut(s) 244
PcsI WCGNNNNNNNCGW 1 cut(s) 25
PfeI GAWTC 7 cut(s) 80, 170, 229, 354, 415, 434, 468
Pfl23II CGTACG 1 cut(s) 685
PkrI GCNGC 3 cut(s) 289, 692, 695
PleI GAGTC 1 cut(s) 643
PpsI GAGTC 1 cut(s) 643
Ppu21I YACGTR 1 cut(s) 685
PspLI CGTACG 1 cut(s) 685
PspN4I GGNNCC 1 cut(s) 244
PsuI RGATCY 2 cut(s) 396, 482
RsaI GTAC 5 cut(s) 165, 403, 626, 683, 687
RsaNI GTAC 5 cut(s) 164, 402, 625, 682, 686
SaqAI TTAA 5 cut(s) 143, 320, 342, 588, 603
SatI GCNGC 3 cut(s) 288, 691, 694
Sau3AI GATC 8 cut(s) 75, 396, 442, 482, 488, 494, 559, 676
SchI GAGTC 1 cut(s) 644
ScrFI CCNGG 1 cut(s) 361
SfaNI GCATC 1 cut(s) 60
SgrAI CRCCGGYG 1 cut(s) 671
SmlI CTYRAG 2 cut(s) 93, 472
SmoI CTYRAG 2 cut(s) 93, 472
SnaBI TACGTA 1 cut(s) 685
Sse9I AATT 2 cut(s) 46, 268
SsiI CCGC 7 cut(s) 159, 287, 290, 348, 509, 693, 696
SspMI CTAG 2 cut(s) 480, 486
StyD4I CCNGG 1 cut(s) 359
TaaI ACNGT 5 cut(s) 109, 226, 301, 618, 649
TaiI ACGT 1 cut(s) 687
TaqI TCGA 3 cut(s) 19, 78, 620
TasI AATT 2 cut(s) 46, 268
TatI WGTACW 1 cut(s) 624
TauI GCSGC 2 cut(s) 290, 696
TfiI GAWTC 7 cut(s) 80, 170, 229, 354, 415, 434, 468
Tru1I TTAA 5 cut(s) 143, 320, 342, 588, 603
Tru9I TTAA 5 cut(s) 143, 320, 342, 588, 603
TscAI CASTG 2 cut(s) 46, 467
TseI GCWGC 1 cut(s) 690
TspDTI ATGAA 1 cut(s) 142
TspGWI ACGGA 5 cut(s) 47, 255, 357, 419, 532
TspRI CASTG 2 cut(s) 46, 467
XbaI TCTAGA 2 cut(s) 479, 485
XcmI CCANNNNNNNNNTGG 1 cut(s) 69
XspI CTAG 2 cut(s) 480, 486
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.