Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012466.1

Orthogroup ID

OG0003322

Physical Location & Seq

Genomic Coordinates Reverse (-)

14149 .. 14910

Gene Structure 762 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012466.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

atgagctgcaatggttgccgagtcctccgaaaggggtgcagtgagacatgcatactgaggtcgtgcctccgtttgatcgattgtcccgaatcccaaggcaacgccaccttgttcctcgccaagtttttcggccgcagcgatctcttgtccttcatctccgccgtgcctgaaaatcaacgccctgctctttttcagtctctgcttttcgaagcatgcggccgtacggtgaatccggtgagcggagcggtggggcttctgtcgagcgggaactggcacgtgtgccacgcggcggtccagacggtgttatccggcggcgttttgaggccgttaccggcgatttcgacgccaaagctggaagaatcctccgtcactttcgatagaggcgcatgcggaatacaagacctccactacacatccgtaccgtccatgttctacgacgatgtggaacgtagccagccgttggatgtggcgctgtcgctgaagccgaatctctcggccgcggcggccggtggaagaggacgagcgagggggaggagttgcgcgatcgagagatcaatgagagatacggtgtcgtttaattccgaagattcgatcatgactacgagcgccggcggtggtgattcgaacggcgatcgcaagcttctgaatctttttgtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOB

Protein Analysis

219

Amino Acids

23.35

Weight (kDa)

8.06

Isoelectric Point (pI)

63.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003322)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49940 AT5G67420 AT5G67420
fragaria_vesca	FvH4_2g04090 FvH4_2g33260 FvH4_2g33260
malus_domestica	MD02G1165000.v1.1 MD05G1097900.v1.1 MD08G1086800.v1.1 MD10G1103500.v1.1 MD15G1071500.v1.1
prunus_persica	Prupe.1G424400_v2.0.a1 Prupe.8G142100_v2.0.a1
pyrus_communis	pycom05g09600 pycom08g07110 pycom15g06730
rosa_chinensis	RchiOBHm_Chr6g0253441 RchiOBHm_Chr6g0309381
rosa_laevigata	RLG00000010571 RLG00000015018
rosa_multiflora	Rmu_sc0005426.1_g000011 Rmu_sc0005426.1_g000012 Rmu_sc0012466.1_g000002
rosa_roxburghii	Rroxscaffold_7G00159450
rosa_rugosa	Rorug05G0544300 Rorug06G0371700
rosa_samantha	Rh6AG059300 Rh6AG484800 Rh6BG052800 Rh6BG494000 Rh6CG050500 Rh6CG498900 Rh6DG047200 Rh6DG485200
rosa_wichuraiana	Rw0G004820 Rw6G042220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	460
AccBSI	CCGCTC	3 cut(s)	240, 245, 264
AccII	CGCG	3 cut(s)	287, 500, 542
AcoI	YGGCCR	4 cut(s)	130, 217, 495, 504
AcuI	CTGAAG	1 cut(s)	500
AcvI	CACGTG	1 cut(s)	277
AcyI	GRCGYC	1 cut(s)	344
AfaI	GTAC	2 cut(s)	223, 420
AfiI	CCNNNNNNNGG	4 cut(s)	31, 239, 289, 460
AflIII	ACRYGT	1 cut(s)	276
AluBI	AGCT	3 cut(s)	6, 352, 640
AluI	AGCT	3 cut(s)	6, 352, 640
Alw26I	GTCTC	2 cut(s)	38, 201
AlwNI	CAGNNNCTG	1 cut(s)	199
AoxI	GGCC	5 cut(s)	130, 217, 323, 495, 504
ApeKI	GCWGC	2 cut(s)	6, 135
AsiSI	GCGATCGC	1 cut(s)	634
AspLEI	GCGC	4 cut(s)	386, 472, 542, 608
AspS9I	GGNCC	1 cut(s)	292
AsuHPI	GGTGA	3 cut(s)	238, 247, 629
AsuII	TTCGAA	2 cut(s)	207, 623
AvaII	GGWCC	1 cut(s)	292
BaeI	ACNNNNGTAYC	2 cut(s)	402, 435
BbrPI	CACGTG	1 cut(s)	277
BbvI	GCAGC	1 cut(s)	147
BceAI	ACGGC	5 cut(s)	146, 204, 310, 442, 643
BcgI	CGANNNNNNTGC	2 cut(s)	18, 52
BcoDI	GTCTC	2 cut(s)	38, 201
BfoI	RGCGCY	2 cut(s)	473, 609
BglI	GCCNNNNNGGC	1 cut(s)	503
BisI	GCNGC	9 cut(s)	7, 133, 136, 217, 288, 313, 498, 501, 504
BlsI	GCNGC	9 cut(s)	8, 134, 137, 218, 289, 314, 499, 502, 505
Bme18I	GGWCC	1 cut(s)	292
BmgT120I	GGNCC	1 cut(s)	292
Bpu14I	TTCGAA	2 cut(s)	207, 623
Bsa29I	ATCGAT	1 cut(s)	78
BsaAI	YACGTR	1 cut(s)	277
BsaHI	GRCGYC	1 cut(s)	344
BsaJI	CCNNGG	2 cut(s)	94, 498
BsaWI	WCCGGW	1 cut(s)	232
BsaXI	ACNNNNNCTCC	2 cut(s)	387, 417
Bsc4I	CCNNNNNNNGG	4 cut(s)	31, 239, 289, 460
Bse118I	RCCGGY	3 cut(s)	331, 506, 608
Bse1I	ACTGG	1 cut(s)	275
Bse3DI	GCAATG	1 cut(s)	16
BseCI	ATCGAT	1 cut(s)	78
BseDI	CCNNGG	2 cut(s)	94, 498
BseGI	GGATG	2 cut(s)	413, 469
BseLI	CCNNNNNNNGG	4 cut(s)	31, 239, 289, 460
BseMI	GCAATG	1 cut(s)	16
BseMII	CTCAG	1 cut(s)	47
BseNI	ACTGG	1 cut(s)	275
BseRI	GAGGAG	1 cut(s)	547
BseX3I	CGGCCG	4 cut(s)	130, 217, 495, 504
BseXI	GCAGC	1 cut(s)	147
BsgI	GTGCAG	1 cut(s)	58
Bsh1236I	CGCG	3 cut(s)	287, 500, 542
Bsh1285I	CGRYCG	6 cut(s)	133, 220, 498, 507, 546, 634
BshFI	GGCC	5 cut(s)	132, 219, 325, 497, 506
BshVI	ATCGAT	1 cut(s)	78
BsiEI	CGRYCG	6 cut(s)	133, 220, 498, 507, 546, 634
BsiSI	CCGG	5 cut(s)	233, 309, 332, 507, 609
BsiWI	CGTACG	1 cut(s)	221
BslFI	GGGAC	1 cut(s)	69
BslI	CCNNNNNNNGG	4 cut(s)	31, 239, 289, 460
BsmAI	GTCTC	2 cut(s)	38, 201
BsmFI	GGGAC	1 cut(s)	69
BsnI	GGCC	5 cut(s)	132, 219, 325, 497, 506
Bsp119I	TTCGAA	2 cut(s)	207, 623
Bsp143I	GATC	6 cut(s)	75, 139, 543, 551, 591, 631
BspANI	GGCC	5 cut(s)	132, 219, 325, 497, 506
BspCNI	CTCAG	1 cut(s)	48
BspDI	ATCGAT	1 cut(s)	78
BspFNI	CGCG	3 cut(s)	287, 500, 542
BspHI	TCATGA	1 cut(s)	594
BspT104I	TTCGAA	2 cut(s)	207, 623
BsrBI	CCGCTC	3 cut(s)	240, 245, 264
BsrDI	GCAATG	1 cut(s)	16
BsrFI	RCCGGY	3 cut(s)	331, 506, 608
BsrI	ACTGG	1 cut(s)	275
BssAI	RCCGGY	3 cut(s)	331, 506, 608
BssECI	CCNNGG	2 cut(s)	94, 498
BssMI	GATC	6 cut(s)	75, 139, 543, 551, 591, 631
BssNI	GRCGYC	1 cut(s)	344
BssT1I	CCWWGG	1 cut(s)	94
Bst4CI	ACNGT	4 cut(s)	226, 301, 423, 568
Bst6I	CTCTTC	1 cut(s)	508
BstACI	GRCGYC	1 cut(s)	344
BstAPI	GCANNNNNTGC	1 cut(s)	15
BstBAI	YACGTR	1 cut(s)	277
BstBI	TTCGAA	2 cut(s)	207, 623
BstC8I	GCNNGC	5 cut(s)	214, 388, 455, 610, 638
BstDEI	CTNAG	1 cut(s)	56
BstDSI	CCRYGG	1 cut(s)	498
BstENI	CCTNNNNNAGG	1 cut(s)	29
BstF5I	GGATG	2 cut(s)	413, 469
BstFNI	CGCG	3 cut(s)	287, 500, 542
BstH2I	RGCGCY	2 cut(s)	473, 609
BstHHI	GCGC	4 cut(s)	386, 472, 542, 608
BstKTI	GATC	6 cut(s)	78, 142, 546, 554, 594, 634
BstMAI	GTCTC	2 cut(s)	38, 201
BstMBI	GATC	6 cut(s)	75, 139, 543, 551, 591, 631
BstMCI	CGRYCG	6 cut(s)	133, 220, 498, 507, 546, 634
BstMWI	GCNNNNNNNGC	2 cut(s)	15, 503
BstNSI	RCATGY	3 cut(s)	51, 216, 390
BstUI	CGCG	3 cut(s)	287, 500, 542
BstV1I	GCAGC	1 cut(s)	147
BstZI	CGGCCG	4 cut(s)	130, 217, 495, 504
Bsu15I	ATCGAT	1 cut(s)	78
BsuRI	GGCC	5 cut(s)	132, 219, 325, 497, 506
BsuTUI	ATCGAT	1 cut(s)	78
BtgI	CCRYGG	1 cut(s)	498
BtsCI	GGATG	2 cut(s)	413, 469
BtsI	GCAGTG	1 cut(s)	46
BtsIMutI	CAGTG	1 cut(s)	46
Cac8I	GCNNGC	5 cut(s)	214, 388, 455, 610, 638
CaiI	CAGNNNCTG	1 cut(s)	199
CciI	TCATGA	1 cut(s)	594
CfoI	GCGC	4 cut(s)	386, 472, 542, 608
Cfr10I	RCCGGY	3 cut(s)	331, 506, 608
Cfr13I	GGNCC	1 cut(s)	292
Cfr42I	CCGCGG	1 cut(s)	501
ClaI	ATCGAT	1 cut(s)	78
CseI	GACGC	1 cut(s)	352
Csp6I	GTAC	2 cut(s)	222, 419
CviAII	CATG	5 cut(s)	48, 213, 387, 427, 595
CviQI	GTAC	2 cut(s)	222, 419
DdeI	CTNAG	1 cut(s)	56
DpnI	GATC	6 cut(s)	77, 141, 545, 553, 593, 633
DpnII	GATC	6 cut(s)	75, 139, 543, 551, 591, 631
EaeI	YGGCCR	4 cut(s)	130, 217, 495, 504
EagI	CGGCCG	4 cut(s)	130, 217, 495, 504
Eam1104I	CTCTTC	1 cut(s)	508
EarI	CTCTTC	1 cut(s)	508
EciI	GGCGGA	1 cut(s)	148
EclXI	CGGCCG	4 cut(s)	130, 217, 495, 504
Eco130I	CCWWGG	1 cut(s)	94
Eco47I	GGWCC	1 cut(s)	292
Eco52I	CGGCCG	4 cut(s)	130, 217, 495, 504
Eco57I	CTGAAG	1 cut(s)	500
Eco72I	CACGTG	1 cut(s)	277
EcoNI	CCTNNNNNAGG	1 cut(s)	29
EcoT14I	CCWWGG	1 cut(s)	94
EcoT22I	ATGCAT	1 cut(s)	53
ErhI	CCWWGG	1 cut(s)	94
FaeI	CATG	5 cut(s)	51, 216, 390, 430, 598
FaiI	YATR	6 cut(s)	49, 53, 214, 388, 428, 596
FaqI	GGGAC	1 cut(s)	69
FatI	CATG	5 cut(s)	47, 212, 386, 426, 594
FauI	CCCGC	1 cut(s)	257
Fnu4HI	GCNGC	9 cut(s)	7, 133, 136, 217, 288, 313, 498, 501, 504
FokI	GGATG	2 cut(s)	400, 476
Fsp4HI	GCNGC	9 cut(s)	7, 133, 136, 217, 288, 313, 498, 501, 504
GlaI	GCGC	4 cut(s)	385, 471, 541, 607
GluI	GCNGC	9 cut(s)	7, 133, 136, 217, 288, 313, 498, 501, 504
HaeII	RGCGCY	2 cut(s)	473, 609
HaeIII	GGCC	5 cut(s)	132, 219, 325, 497, 506
HapII	CCGG	5 cut(s)	233, 309, 332, 507, 609
HgaI	GACGC	1 cut(s)	352
HhaI	GCGC	4 cut(s)	386, 472, 542, 608
Hin1I	GRCGYC	1 cut(s)	344
Hin1II	CATG	5 cut(s)	51, 216, 390, 430, 598
Hin6I	GCGC	4 cut(s)	384, 470, 540, 606
HinP1I	GCGC	4 cut(s)	384, 470, 540, 606
HindIII	AAGCTT	1 cut(s)	638
HinfI	GANTC	8 cut(s)	21, 89, 229, 359, 487, 587, 620, 646
HpaII	CCGG	5 cut(s)	233, 309, 332, 507, 609
HphI	GGTGA	3 cut(s)	238, 247, 629
Hpy188I	TCNGA	3 cut(s)	29, 583, 645
Hpy188III	TCNNGA	4 cut(s)	86, 295, 547, 595
Hpy99I	CGWCG	2 cut(s)	346, 440
HpyAV	CCTTC	1 cut(s)	160
HpyCH4III	ACNGT	4 cut(s)	226, 301, 423, 568
HpyCH4IV	ACGT	2 cut(s)	276, 448
HpyCH4V	TGCA	3 cut(s)	9, 39, 51
HpyF10VI	GCNNNNNNNGC	2 cut(s)	15, 503
HpyF3I	CTNAG	1 cut(s)	56
HpySE526I	ACGT	2 cut(s)	276, 448
Hsp92I	GRCGYC	1 cut(s)	344
Hsp92II	CATG	5 cut(s)	51, 216, 390, 430, 598
HspAI	GCGC	4 cut(s)	384, 470, 540, 606
KroI	GCCGGC	1 cut(s)	608
KroNI	GCCGGC	1 cut(s)	610
KspI	CCGCGG	1 cut(s)	501
Kzo9I	GATC	6 cut(s)	75, 139, 543, 551, 591, 631
LmnI	GCTCC	1 cut(s)	242
Lsp1109I	GCAGC	1 cut(s)	147
MaeII	ACGT	2 cut(s)	276, 448
MaeIII	GTNAC	2 cut(s)	327, 367
MalI	GATC	6 cut(s)	77, 141, 545, 553, 593, 633
MbiI	CCGCTC	3 cut(s)	240, 245, 264
MboI	GATC	6 cut(s)	75, 139, 543, 551, 591, 631
MboII	GAAGA	3 cut(s)	368, 525, 596
MluCI	AATT	1 cut(s)	577
MlyI	GAGTC	1 cut(s)	30
MmeI	TCCRAC	1 cut(s)	441
Mph1103I	ATGCAT	1 cut(s)	53
MreI	CGCCGGCG	1 cut(s)	608
MroNI	GCCGGC	1 cut(s)	608
MseI	TTAA	1 cut(s)	576
MspA1I	CMGCKG	1 cut(s)	500
MspI	CCGG	5 cut(s)	233, 309, 332, 507, 609
MvnI	CGCG	3 cut(s)	287, 500, 542
MwoI	GCNNNNNNNGC	2 cut(s)	15, 503
NaeI	GCCGGC	1 cut(s)	610
NdeII	GATC	6 cut(s)	75, 139, 543, 551, 591, 631
NgoMIV	GCCGGC	1 cut(s)	608
NlaIII	CATG	5 cut(s)	51, 216, 390, 430, 598
NmeAIII	GCCGAG	2 cut(s)	44, 473
NmuCI	GTSAC	1 cut(s)	367
NsiI	ATGCAT	1 cut(s)	53
NspI	RCATGY	3 cut(s)	51, 216, 390
NspV	TTCGAA	2 cut(s)	207, 623
PaeI	GCATGC	2 cut(s)	216, 390
PagI	TCATGA	1 cut(s)	594
PcsI	WCGNNNNNNNCGW	3 cut(s)	84, 135, 482
PdiI	GCCGGC	1 cut(s)	610
PfeI	GAWTC	7 cut(s)	89, 229, 359, 487, 587, 620, 646
Pfl23II	CGTACG	1 cut(s)	221
PflMI	CCANNNNNTGG	1 cut(s)	460
PkrI	GCNGC	9 cut(s)	8, 134, 137, 218, 289, 314, 499, 502, 505
Ple19I	CGATCG	2 cut(s)	546, 634
PleI	GAGTC	1 cut(s)	29
PmaCI	CACGTG	1 cut(s)	277
PmlI	CACGTG	1 cut(s)	277
PpsI	GAGTC	1 cut(s)	29
Ppu21I	YACGTR	1 cut(s)	277
PspCI	CACGTG	1 cut(s)	277
PspLI	CGTACG	1 cut(s)	221
PspPI	GGNCC	1 cut(s)	292
PstNI	CAGNNNCTG	1 cut(s)	199
PvuI	CGATCG	2 cut(s)	546, 634
RgaI	GCGATCGC	1 cut(s)	634
RsaI	GTAC	2 cut(s)	223, 420
RsaNI	GTAC	2 cut(s)	222, 419
SacII	CCGCGG	1 cut(s)	501
SaqAI	TTAA	1 cut(s)	576
SatI	GCNGC	9 cut(s)	7, 133, 136, 217, 288, 313, 498, 501, 504
Sau3AI	GATC	6 cut(s)	75, 139, 543, 551, 591, 631
Sau96I	GGNCC	1 cut(s)	292
SchI	GAGTC	1 cut(s)	30
SetI	ASST	8 cut(s)	8, 62, 110, 279, 354, 405, 451, 642
SfaAI	GCGATCGC	1 cut(s)	634
SfiI	GGCCNNNNNGGCC	1 cut(s)	503
Sfr303I	CCGCGG	1 cut(s)	501
SfuI	TTCGAA	2 cut(s)	207, 623
SgfI	GCGATCGC	1 cut(s)	634
SgrAI	CRCCGGYG	1 cut(s)	608
SgrBI	CCGCGG	1 cut(s)	501
SinI	GGWCC	1 cut(s)	292
SphI	GCATGC	2 cut(s)	216, 390
Sse9I	AATT	1 cut(s)	577
StyI	CCWWGG	1 cut(s)	94
TaaI	ACNGT	4 cut(s)	226, 301, 423, 568
TaiI	ACGT	2 cut(s)	279, 451
TaqI	TCGA	8 cut(s)	78, 207, 260, 341, 375, 546, 590, 623
TasI	AATT	1 cut(s)	577
TauI	GCSGC	7 cut(s)	135, 219, 290, 315, 500, 503, 506
TfiI	GAWTC	7 cut(s)	89, 229, 359, 487, 587, 620, 646
Tru1I	TTAA	1 cut(s)	576
Tru9I	TTAA	1 cut(s)	576
TscAI	CASTG	1 cut(s)	46
TseFI	GTSAC	1 cut(s)	367
TseI	GCWGC	2 cut(s)	6, 135
Tsp45I	GTSAC	1 cut(s)	367
TspDTI	ATGAA	1 cut(s)	142
TspGWI	ACGGA	3 cut(s)	59, 355, 406
TspRI	CASTG	1 cut(s)	46
Van91I	CCANNNNNTGG	1 cut(s)	460
VpaK11BI	GGWCC	1 cut(s)	292
XagI	CCTNNNNNAGG	1 cut(s)	29
XceI	RCATGY	3 cut(s)	51, 216, 390
Zsp2I	ATGCAT	1 cut(s)	53

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.