RchiOBHm_Chr6g0309381

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0003322
Physical Location & Seq
Reverse (-)
67103712 .. 67105470
1759 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ27820

Sequence Viewer

Length: 660 bp
ATGAGCTGCAATGGTTGCCGAGTCCTCCGAAAGGGGTGCAGTGAGACATGCATACTGAGGTCGTGCCTCCGTTTGATCGATTGTCCCGAATCCCAAGGCAACGCCACCTTGTTCCTCGCCAAGTTTTTCGGCCGCAGCGATCTCTTGTCCTTCATCTCCGCCGTGCCTGAAAATCAACGCCCTGCTCTTTTTCAGTCTCTGCTTTTCGAAGCATGCGGCCGTACGGTGAATCCGGTGAGCGGAGCGGTGGGGCTTCTGTCAAGCGGGAACTGGCACGTGTGCCACGCGGCGGTCCAGGCGGTGTTATCCGGCGGCGTTTTAAGGCCGTTACCGGCGATTTCGACGCCAAAGCTGGAAGAATCCTCCGTCACTTTCGATAGAGGCGCATGCGGAATACAAGACCTCCACTACACATCCGTACCGTCCATGTTCTACGACGACGTGGAACGTAGCCAGCCGTTGGATGTGGCGCTGTCGCTGAAGCCGAATCTCGCGGCCGCGGCGGCCGGTGGAAGAGGACGAGCGAGGGGGAGGAGTTGCGCGATCGAGCGATCAATGAGAGATACGGTGTCGTTTAATTCCGAAGATTCGATCATGACTACGAGCGCCGGCGGTGGTGATTCGAACGGCGATCGCAAGCTTCTGAATCTTTTTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

219

Amino Acids

23.31

Weight (kDa)

8.06

Isoelectric Point (pI)

63.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 2 - 100 4.5e-24 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 460
AccBSI CCGCTC 2 cut(s) 240, 245
AccII CGCG 4 cut(s) 287, 494, 500, 542
AcoI YGGCCR 4 cut(s) 130, 217, 495, 504
AcuI CTGAAG 1 cut(s) 500
AcvI CACGTG 1 cut(s) 277
AcyI GRCGYC 1 cut(s) 344
AfaI GTAC 2 cut(s) 223, 420
AfiI CCNNNNNNNGG 4 cut(s) 31, 239, 289, 460
AflIII ACRYGT 1 cut(s) 276
AjiI CACGTC 1 cut(s) 442
AjnI CCWGG 1 cut(s) 294
AluBI AGCT 3 cut(s) 6, 352, 640
AluI AGCT 3 cut(s) 6, 352, 640
Alw26I GTCTC 2 cut(s) 38, 201
AlwNI CAGNNNCTG 1 cut(s) 199
AoxI GGCC 5 cut(s) 130, 217, 323, 495, 504
ApeKI GCWGC 2 cut(s) 6, 135
AsiSI GCGATCGC 1 cut(s) 634
AspLEI GCGC 4 cut(s) 386, 472, 542, 608
AspS9I GGNCC 1 cut(s) 292
AsuHPI GGTGA 3 cut(s) 238, 247, 629
AsuII TTCGAA 2 cut(s) 207, 623
AvaII GGWCC 1 cut(s) 292
BaeI ACNNNNGTAYC 2 cut(s) 402, 435
BbrPI CACGTG 1 cut(s) 277
BbvI GCAGC 1 cut(s) 147
BceAI ACGGC 5 cut(s) 146, 204, 310, 442, 643
BcgI CGANNNNNNTGC 2 cut(s) 18, 52
BciT130I CCWGG 1 cut(s) 296
BcoDI GTCTC 2 cut(s) 38, 201
BfoI RGCGCY 2 cut(s) 473, 609
BglI GCCNNNNNGGC 1 cut(s) 503
Bme1390I CCNGG 1 cut(s) 296
Bme18I GGWCC 1 cut(s) 292
BmgBI CACGTC 1 cut(s) 442
BmgT120I GGNCC 1 cut(s) 292
BmrFI CCNGG 1 cut(s) 296
Bpu14I TTCGAA 2 cut(s) 207, 623
Bsa29I ATCGAT 1 cut(s) 78
BsaAI YACGTR 1 cut(s) 277
BsaHI GRCGYC 1 cut(s) 344
BsaJI CCNNGG 2 cut(s) 94, 498
BsaWI WCCGGW 1 cut(s) 232
BsaXI ACNNNNNCTCC 2 cut(s) 387, 417
Bsc4I CCNNNNNNNGG 4 cut(s) 31, 239, 289, 460
Bse118I RCCGGY 3 cut(s) 331, 506, 608
Bse1I ACTGG 1 cut(s) 275
Bse3DI GCAATG 1 cut(s) 16
BseBI CCWGG 1 cut(s) 296
BseCI ATCGAT 1 cut(s) 78
BseDI CCNNGG 2 cut(s) 94, 498
BseGI GGATG 2 cut(s) 413, 469
BseLI CCNNNNNNNGG 4 cut(s) 31, 239, 289, 460
BseMI GCAATG 1 cut(s) 16
BseMII CTCAG 1 cut(s) 47
BseNI ACTGG 1 cut(s) 275
BseRI GAGGAG 1 cut(s) 547
BseX3I CGGCCG 4 cut(s) 130, 217, 495, 504
BseXI GCAGC 1 cut(s) 147
BsgI GTGCAG 1 cut(s) 58
Bsh1236I CGCG 4 cut(s) 287, 494, 500, 542
Bsh1285I CGRYCG 6 cut(s) 133, 220, 498, 507, 546, 634
BshFI GGCC 5 cut(s) 132, 219, 325, 497, 506
BshVI ATCGAT 1 cut(s) 78
BsiEI CGRYCG 6 cut(s) 133, 220, 498, 507, 546, 634
BsiSI CCGG 5 cut(s) 233, 309, 332, 507, 609
BsiWI CGTACG 1 cut(s) 221
BslFI GGGAC 1 cut(s) 69
BslI CCNNNNNNNGG 4 cut(s) 31, 239, 289, 460
BsmAI GTCTC 2 cut(s) 38, 201
BsmFI GGGAC 1 cut(s) 69
BsnI GGCC 5 cut(s) 132, 219, 325, 497, 506
Bsp119I TTCGAA 2 cut(s) 207, 623
Bsp143I GATC 6 cut(s) 75, 139, 543, 551, 591, 631
BspANI GGCC 5 cut(s) 132, 219, 325, 497, 506
BspCNI CTCAG 1 cut(s) 48
BspDI ATCGAT 1 cut(s) 78
BspFNI CGCG 4 cut(s) 287, 494, 500, 542
BspHI TCATGA 1 cut(s) 594
BspT104I TTCGAA 2 cut(s) 207, 623
BsrBI CCGCTC 2 cut(s) 240, 245
BsrDI GCAATG 1 cut(s) 16
BsrFI RCCGGY 3 cut(s) 331, 506, 608
BsrI ACTGG 1 cut(s) 275
BssAI RCCGGY 3 cut(s) 331, 506, 608
BssECI CCNNGG 2 cut(s) 94, 498
BssMI GATC 6 cut(s) 75, 139, 543, 551, 591, 631
BssNI GRCGYC 1 cut(s) 344
BssT1I CCWWGG 1 cut(s) 94
Bst2UI CCWGG 1 cut(s) 296
Bst4CI ACNGT 3 cut(s) 226, 423, 568
Bst6I CTCTTC 1 cut(s) 508
BstACI GRCGYC 1 cut(s) 344
BstAPI GCANNNNNTGC 1 cut(s) 15
BstBAI YACGTR 1 cut(s) 277
BstBI TTCGAA 2 cut(s) 207, 623
BstC8I GCNNGC 5 cut(s) 214, 388, 455, 610, 638
BstDEI CTNAG 1 cut(s) 56
BstDSI CCRYGG 1 cut(s) 498
BstENI CCTNNNNNAGG 1 cut(s) 29
BstF5I GGATG 2 cut(s) 413, 469
BstFNI CGCG 4 cut(s) 287, 494, 500, 542
BstH2I RGCGCY 2 cut(s) 473, 609
BstHHI GCGC 4 cut(s) 386, 472, 542, 608
BstKTI GATC 6 cut(s) 78, 142, 546, 554, 594, 634
BstMAI GTCTC 2 cut(s) 38, 201
BstMBI GATC 6 cut(s) 75, 139, 543, 551, 591, 631
BstMCI CGRYCG 6 cut(s) 133, 220, 498, 507, 546, 634
BstMWI GCNNNNNNNGC 4 cut(s) 15, 296, 500, 503
BstNI CCWGG 1 cut(s) 296
BstNSI RCATGY 3 cut(s) 51, 216, 390
BstSCI CCNGG 1 cut(s) 294
BstUI CGCG 4 cut(s) 287, 494, 500, 542
BstV1I GCAGC 1 cut(s) 147
BstZI CGGCCG 4 cut(s) 130, 217, 495, 504
Bsu15I ATCGAT 1 cut(s) 78
BsuRI GGCC 5 cut(s) 132, 219, 325, 497, 506
BsuTUI ATCGAT 1 cut(s) 78
BtgI CCRYGG 1 cut(s) 498
BtrI CACGTC 1 cut(s) 442
BtsCI GGATG 2 cut(s) 413, 469
BtsI GCAGTG 1 cut(s) 46
BtsIMutI CAGTG 1 cut(s) 46
Cac8I GCNNGC 5 cut(s) 214, 388, 455, 610, 638
CaiI CAGNNNCTG 1 cut(s) 199
CciI TCATGA 1 cut(s) 594
CciNI GCGGCCGC 1 cut(s) 495
CfoI GCGC 4 cut(s) 386, 472, 542, 608
Cfr10I RCCGGY 3 cut(s) 331, 506, 608
Cfr13I GGNCC 1 cut(s) 292
Cfr42I CCGCGG 1 cut(s) 501
ClaI ATCGAT 1 cut(s) 78
CseI GACGC 1 cut(s) 352
Csp6I GTAC 2 cut(s) 222, 419
CviAII CATG 5 cut(s) 48, 213, 387, 427, 595
CviQI GTAC 2 cut(s) 222, 419
DdeI CTNAG 1 cut(s) 56
DpnI GATC 6 cut(s) 77, 141, 545, 553, 593, 633
DpnII GATC 6 cut(s) 75, 139, 543, 551, 591, 631
EaeI YGGCCR 4 cut(s) 130, 217, 495, 504
EagI CGGCCG 4 cut(s) 130, 217, 495, 504
Eam1104I CTCTTC 1 cut(s) 508
EarI CTCTTC 1 cut(s) 508
EciI GGCGGA 1 cut(s) 148
EclXI CGGCCG 4 cut(s) 130, 217, 495, 504
Eco130I CCWWGG 1 cut(s) 94
Eco47I GGWCC 1 cut(s) 292
Eco52I CGGCCG 4 cut(s) 130, 217, 495, 504
Eco57I CTGAAG 1 cut(s) 500
Eco72I CACGTG 1 cut(s) 277
EcoNI CCTNNNNNAGG 1 cut(s) 29
EcoRII CCWGG 1 cut(s) 294
EcoT14I CCWWGG 1 cut(s) 94
EcoT22I ATGCAT 1 cut(s) 53
ErhI CCWWGG 1 cut(s) 94
FaeI CATG 5 cut(s) 51, 216, 390, 430, 598
FaiI YATR 6 cut(s) 49, 53, 214, 388, 428, 596
FaqI GGGAC 1 cut(s) 69
FatI CATG 5 cut(s) 47, 212, 386, 426, 594
FauI CCCGC 1 cut(s) 257
FokI GGATG 2 cut(s) 400, 476
GlaI GCGC 4 cut(s) 385, 471, 541, 607
HaeII RGCGCY 2 cut(s) 473, 609
HaeIII GGCC 5 cut(s) 132, 219, 325, 497, 506
HapII CCGG 5 cut(s) 233, 309, 332, 507, 609
HgaI GACGC 1 cut(s) 352
HhaI GCGC 4 cut(s) 386, 472, 542, 608
Hin1I GRCGYC 1 cut(s) 344
Hin1II CATG 5 cut(s) 51, 216, 390, 430, 598
Hin6I GCGC 4 cut(s) 384, 470, 540, 606
HinP1I GCGC 4 cut(s) 384, 470, 540, 606
HindIII AAGCTT 1 cut(s) 638
HinfI GANTC 8 cut(s) 21, 89, 229, 359, 487, 587, 620, 646
HpaII CCGG 5 cut(s) 233, 309, 332, 507, 609
HphI GGTGA 3 cut(s) 238, 247, 629
Hpy188I TCNGA 3 cut(s) 29, 583, 645
Hpy188III TCNNGA 2 cut(s) 86, 595
Hpy99I CGWCG 3 cut(s) 346, 440, 443
HpyAV CCTTC 1 cut(s) 160
HpyCH4III ACNGT 3 cut(s) 226, 423, 568
HpyCH4IV ACGT 3 cut(s) 276, 441, 448
HpyCH4V TGCA 3 cut(s) 9, 39, 51
HpyF10VI GCNNNNNNNGC 4 cut(s) 15, 296, 500, 503
HpyF3I CTNAG 1 cut(s) 56
HpySE526I ACGT 3 cut(s) 276, 441, 448
Hsp92I GRCGYC 1 cut(s) 344
Hsp92II CATG 5 cut(s) 51, 216, 390, 430, 598
HspAI GCGC 4 cut(s) 384, 470, 540, 606
KroI GCCGGC 1 cut(s) 608
KroNI GCCGGC 1 cut(s) 610
KspI CCGCGG 1 cut(s) 501
Kzo9I GATC 6 cut(s) 75, 139, 543, 551, 591, 631
LmnI GCTCC 1 cut(s) 242
Lsp1109I GCAGC 1 cut(s) 147
MaeII ACGT 3 cut(s) 276, 441, 448
MaeIII GTNAC 2 cut(s) 327, 367
MalI GATC 6 cut(s) 77, 141, 545, 553, 593, 633
MbiI CCGCTC 2 cut(s) 240, 245
MboI GATC 6 cut(s) 75, 139, 543, 551, 591, 631
MboII GAAGA 3 cut(s) 368, 525, 596
MluCI AATT 1 cut(s) 577
MlyI GAGTC 1 cut(s) 30
MmeI TCCRAC 1 cut(s) 441
Mph1103I ATGCAT 1 cut(s) 53
MreI CGCCGGCG 1 cut(s) 608
MroNI GCCGGC 1 cut(s) 608
MseI TTAA 2 cut(s) 320, 576
MspA1I CMGCKG 1 cut(s) 500
MspI CCGG 5 cut(s) 233, 309, 332, 507, 609
MspR9I CCNGG 1 cut(s) 296
MvaI CCWGG 1 cut(s) 296
MvnI CGCG 4 cut(s) 287, 494, 500, 542
MwoI GCNNNNNNNGC 4 cut(s) 15, 296, 500, 503
NaeI GCCGGC 1 cut(s) 610
NdeII GATC 6 cut(s) 75, 139, 543, 551, 591, 631
NgoMIV GCCGGC 1 cut(s) 608
NlaIII CATG 5 cut(s) 51, 216, 390, 430, 598
NmeAIII GCCGAG 1 cut(s) 44
NmuCI GTSAC 1 cut(s) 367
NotI GCGGCCGC 1 cut(s) 495
NsiI ATGCAT 1 cut(s) 53
NspI RCATGY 3 cut(s) 51, 216, 390
NspV TTCGAA 2 cut(s) 207, 623
PaeI GCATGC 2 cut(s) 216, 390
PagI TCATGA 1 cut(s) 594
PcsI WCGNNNNNNNCGW 3 cut(s) 84, 135, 482
PdiI GCCGGC 1 cut(s) 610
PfeI GAWTC 7 cut(s) 89, 229, 359, 487, 587, 620, 646
Pfl23II CGTACG 1 cut(s) 221
PflMI CCANNNNNTGG 1 cut(s) 460
Ple19I CGATCG 2 cut(s) 546, 634
PleI GAGTC 1 cut(s) 29
PmaCI CACGTG 1 cut(s) 277
PmlI CACGTG 1 cut(s) 277
PpsI GAGTC 1 cut(s) 29
Ppu21I YACGTR 1 cut(s) 277
Psp6I CCWGG 1 cut(s) 294
PspCI CACGTG 1 cut(s) 277
PspGI CCWGG 1 cut(s) 294
PspLI CGTACG 1 cut(s) 221
PspPI GGNCC 1 cut(s) 292
PstNI CAGNNNCTG 1 cut(s) 199
PvuI CGATCG 2 cut(s) 546, 634
RgaI GCGATCGC 1 cut(s) 634
RsaI GTAC 2 cut(s) 223, 420
RsaNI GTAC 2 cut(s) 222, 419
SacII CCGCGG 1 cut(s) 501
SaqAI TTAA 2 cut(s) 320, 576
Sau3AI GATC 6 cut(s) 75, 139, 543, 551, 591, 631
Sau96I GGNCC 1 cut(s) 292
SchI GAGTC 1 cut(s) 30
ScrFI CCNGG 1 cut(s) 296
SetI ASST 9 cut(s) 8, 62, 110, 279, 354, 405, 444, 451, 642
SfaAI GCGATCGC 1 cut(s) 634
SfiI GGCCNNNNNGGCC 1 cut(s) 503
Sfr303I CCGCGG 1 cut(s) 501
SfuI TTCGAA 2 cut(s) 207, 623
SgfI GCGATCGC 1 cut(s) 634
SgrAI CRCCGGYG 1 cut(s) 608
SgrBI CCGCGG 1 cut(s) 501
SinI GGWCC 1 cut(s) 292
SphI GCATGC 2 cut(s) 216, 390
Sse9I AATT 1 cut(s) 577
StyD4I CCNGG 1 cut(s) 294
StyI CCWWGG 1 cut(s) 94
TaaI ACNGT 3 cut(s) 226, 423, 568
TaiI ACGT 3 cut(s) 279, 444, 451
TaqI TCGA 7 cut(s) 78, 207, 341, 375, 546, 590, 623
TasI AATT 1 cut(s) 577
TauI GCSGC 8 cut(s) 135, 219, 290, 315, 497, 500, 503, 506
TfiI GAWTC 7 cut(s) 89, 229, 359, 487, 587, 620, 646
Tru1I TTAA 2 cut(s) 320, 576
Tru9I TTAA 2 cut(s) 320, 576
TscAI CASTG 1 cut(s) 46
TseFI GTSAC 1 cut(s) 367
TseI GCWGC 2 cut(s) 6, 135
Tsp45I GTSAC 1 cut(s) 367
TspDTI ATGAA 1 cut(s) 142
TspGWI ACGGA 3 cut(s) 59, 355, 406
TspRI CASTG 1 cut(s) 46
Van91I CCANNNNNTGG 1 cut(s) 460
VpaK11BI GGWCC 1 cut(s) 292
XagI CCTNNNNNAGG 1 cut(s) 29
XceI RCATGY 3 cut(s) 51, 216, 390
Zsp2I ATGCAT 1 cut(s) 53
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.