Rorug06G0371700

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0003322
Physical Location & Seq
Reverse (-)
51848859 .. 51849218
360 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0371700.1

Sequence Viewer

Length: 360 bp
ATGGAGGACCGGAGTGCAACCATTTTTAAACCCCTCGGTGATCTCGTATTGACACTCCGCAAATCAGGAAAACCAGAGAGGAATGATGTCAAGTGGCACTCCAAGGAGGAACTAGAAAGTTTCAGGGTAGAAATGAAGAATGGTGCAGAGATGGTTCGAGAGTGCTGCAAGGTTGGTGAATGGGCCAGCTACAACACAAAGTATAAGTACATCAACGCACTTCTCGGATTGAATCAATCTCTGCGGAGAATGAAATATGTAAAGTTCGAGAGGTTGAGGGAGGATATGGTTGGGATAAGAAATATAGAGCCACTGGTGGACAGAGTCGAAAGGGCTCTGGCTCTGGCAGTGCAAATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

119

Amino Acids

13.95

Weight (kDa)

9.33

Isoelectric Point (pI)

37.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RPW8 PF05659 34 - 87 2.8e-07 Arabidopsis broad-spectrum mildew resistance protein RPW8
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 58, 244
AcsI RAATTY 1 cut(s) 354
AfaI GTAC 1 cut(s) 209
AgsI TTSAA 1 cut(s) 232
AluBI AGCT 1 cut(s) 189
AluI AGCT 1 cut(s) 189
AoxI GGCC 1 cut(s) 183
ApeKI GCWGC 1 cut(s) 165
ApoI RAATTY 1 cut(s) 354
AspS9I GGNCC 2 cut(s) 7, 183
AsuHPI GGTGA 2 cut(s) 50, 188
AvaII GGWCC 1 cut(s) 7
BanII GRGCYC 1 cut(s) 337
BbvI GCAGC 1 cut(s) 152
BccI CCATC 1 cut(s) 145
BcgI CGANNNNNNTGC 2 cut(s) 147, 181
BfaI CTAG 1 cut(s) 113
BisI GCNGC 1 cut(s) 166
BlsI GCNGC 1 cut(s) 167
Bme18I GGWCC 1 cut(s) 7
BmgT120I GGNCC 2 cut(s) 7, 183
BsaJI CCNNGG 2 cut(s) 34, 102
BsaWI WCCGGW 1 cut(s) 9
Bse1I ACTGG 1 cut(s) 318
BseDI CCNNGG 2 cut(s) 34, 102
BseNI ACTGG 1 cut(s) 318
BseXI GCAGC 1 cut(s) 152
BsgI GTGCAG 1 cut(s) 165
BshFI GGCC 1 cut(s) 185
BsiSI CCGG 1 cut(s) 10
BsnI GGCC 1 cut(s) 185
Bsp1286I GDGCHC 1 cut(s) 337
Bsp143I GATC 1 cut(s) 40
BspACI CCGC 2 cut(s) 58, 244
BspANI GGCC 1 cut(s) 185
BsrI ACTGG 1 cut(s) 318
BssECI CCNNGG 2 cut(s) 34, 102
BssMI GATC 1 cut(s) 40
BssT1I CCWWGG 1 cut(s) 102
BstC8I GCNNGC 1 cut(s) 187
BstKTI GATC 1 cut(s) 43
BstMBI GATC 1 cut(s) 40
BstV1I GCAGC 1 cut(s) 152
BsuRI GGCC 1 cut(s) 185
BtsI GCAGTG 1 cut(s) 354
BtsIMutI CAGTG 2 cut(s) 311, 354
Cac8I GCNNGC 1 cut(s) 187
Cfr13I GGNCC 2 cut(s) 7, 183
Csp6I GTAC 1 cut(s) 208
CviJI RGCY 5 cut(s) 185, 189, 310, 335, 341
CviKI_1 RGCY 5 cut(s) 185, 189, 310, 335, 341
CviQI GTAC 1 cut(s) 208
DpnI GATC 1 cut(s) 42
DpnII GATC 1 cut(s) 40
DraI TTTAAA 1 cut(s) 28
Eco130I CCWWGG 1 cut(s) 102
Eco24I GRGCYC 1 cut(s) 337
Eco47I GGWCC 1 cut(s) 7
EcoT14I CCWWGG 1 cut(s) 102
EcoT38I GRGCYC 1 cut(s) 337
ErhI CCWWGG 1 cut(s) 102
FaiI YATR 4 cut(s) 204, 258, 287, 305
Fnu4HI GCNGC 1 cut(s) 166
FriOI GRGCYC 1 cut(s) 337
Fsp4HI GCNGC 1 cut(s) 166
FspBI CTAG 1 cut(s) 113
GluI GCNGC 1 cut(s) 166
HaeIII GGCC 1 cut(s) 185
HapII CCGG 1 cut(s) 10
HinfI GANTC 2 cut(s) 232, 324
HpaII CCGG 1 cut(s) 10
HphI GGTGA 2 cut(s) 50, 188
Hpy166II GTNNAC 1 cut(s) 319
Hpy188I TCNGA 1 cut(s) 227
Hpy188III TCNNGA 3 cut(s) 66, 158, 268
Hpy8I GTNNAC 1 cut(s) 319
HpyCH4V TGCA 4 cut(s) 17, 146, 168, 352
Kzo9I GATC 1 cut(s) 40
LpnPI CCDG 8 cut(s) 23, 51, 87, 109, 199, 299, 323, 329
Lsp1109I GCAGC 1 cut(s) 152
MaeI CTAG 1 cut(s) 113
MalI GATC 1 cut(s) 42
MboI GATC 1 cut(s) 40
MboII GAAGA 1 cut(s) 148
MhlI GDGCHC 1 cut(s) 337
MluCI AATT 1 cut(s) 354
MlyI GAGTC 1 cut(s) 333
MnlI CCTC 6 cut(s) 44, 72, 100, 264, 270, 274
MseI TTAA 2 cut(s) 27, 358
MspI CCGG 1 cut(s) 10
NdeII GATC 1 cut(s) 40
PcsI WCGNNNNNNNCGW 1 cut(s) 42
PfeI GAWTC 1 cut(s) 232
PflFI GACNNNGTC 1 cut(s) 323
PkrI GCNGC 1 cut(s) 167
PleI GAGTC 1 cut(s) 332
PpsI GAGTC 1 cut(s) 332
PspPI GGNCC 2 cut(s) 7, 183
PsyI GACNNNGTC 1 cut(s) 323
RsaI GTAC 1 cut(s) 209
RsaNI GTAC 1 cut(s) 208
SaqAI TTAA 2 cut(s) 27, 358
SatI GCNGC 1 cut(s) 166
Sau3AI GATC 1 cut(s) 40
Sau96I GGNCC 2 cut(s) 7, 183
SchI GAGTC 1 cut(s) 333
SduI GDGCHC 1 cut(s) 337
SetI ASST 3 cut(s) 174, 191, 275
SinI GGWCC 1 cut(s) 7
Sse9I AATT 1 cut(s) 354
SsiI CCGC 2 cut(s) 58, 244
SspMI CTAG 1 cut(s) 113
StyI CCWWGG 1 cut(s) 102
TaqI TCGA 3 cut(s) 157, 267, 327
TasI AATT 1 cut(s) 354
TatI WGTACW 1 cut(s) 207
TfiI GAWTC 1 cut(s) 232
Tru1I TTAA 2 cut(s) 27, 358
Tru9I TTAA 2 cut(s) 27, 358
TscAI CASTG 2 cut(s) 318, 354
TseI GCWGC 1 cut(s) 165
TspDTI ATGAA 2 cut(s) 149, 266
TspRI CASTG 2 cut(s) 318, 354
Tth111I GACNNNGTC 1 cut(s) 323
VpaK11BI GGWCC 1 cut(s) 7
XapI RAATTY 1 cut(s) 354
XspI CTAG 1 cut(s) 113
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.