Rroxscaffold_7G00159450

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0003322
Physical Location & Seq
Forward (+)
2663233 .. 2664343
1111 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00159450.1

Sequence Viewer

Length: 579 bp
ATGAGCTGCAATGGTTGCCGAGTCCTCCGAAAGGGGTGCAGTGAGACATGCATACTGAGGTCGTGCCTCCGTTTGATCGATTGTCCCGAATCCCAAGGCAACGCCACCTTGTTCCTCGCCAAGTTTTTCGGCCGCAGCGATCTCTTGTCCTTCATCTCCGCCGTGCCTGAAAATCAACGCCCTGCTCTTTTTCAGTCTCTGCTTTTCGAAGCATGCGGCCGTACGGTGAATCCGGTGAGCGGAGCGGTGGGGCTTCTGTCGAGCGGGAACTGGCACGTGTGCCACGCGGCGGTCCAGACGGTGTTATCCGGCGGCGTTTTGAGGCCGTTACCGGCGATTTCGACTCCAAAGCTGGACGAATCCTCCGTCACTTTCGATAGAGGCGCATGCGGAATACAAGACCTCCACTACACATCCGTACCGTCCATGTTCTACGACGATGTGGAACGTAGCCAGCCGTTGGATGTGGCGCTGTCGCTGAAGCCCAATCTCGCGGCCGCGGCGGCCGGTGGAAGAGGACGAGCAAGGGGAAGGAGCTGCGCGATCGAGAGATCAATGAGAGATACGGGTGTCTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

192

Amino Acids

20.51

Weight (kDa)

8.59

Isoelectric Point (pI)

65.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 2 - 100 2.8e-24 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 460
AccBSI CCGCTC 3 cut(s) 240, 245, 264
AccII CGCG 4 cut(s) 287, 494, 500, 542
AcoI YGGCCR 4 cut(s) 130, 217, 495, 504
AcuI CTGAAG 1 cut(s) 500
AcvI CACGTG 1 cut(s) 277
AfaI GTAC 2 cut(s) 223, 420
AfiI CCNNNNNNNGG 4 cut(s) 31, 239, 289, 460
AflIII ACRYGT 1 cut(s) 276
AluBI AGCT 3 cut(s) 6, 352, 537
AluI AGCT 3 cut(s) 6, 352, 537
Alw26I GTCTC 2 cut(s) 38, 201
AlwNI CAGNNNCTG 1 cut(s) 199
AoxI GGCC 5 cut(s) 130, 217, 323, 495, 504
ApeKI GCWGC 3 cut(s) 6, 135, 537
ArsI GACNNNNNNTTYG 2 cut(s) 351, 383
AspLEI GCGC 3 cut(s) 386, 472, 542
AspS9I GGNCC 1 cut(s) 292
AsuHPI GGTGA 2 cut(s) 238, 247
AsuII TTCGAA 1 cut(s) 207
AvaII GGWCC 1 cut(s) 292
BaeI ACNNNNGTAYC 3 cut(s) 402, 435, 555
BbrPI CACGTG 1 cut(s) 277
BbvI GCAGC 2 cut(s) 147, 524
BceAI ACGGC 4 cut(s) 146, 204, 310, 442
BcgI CGANNNNNNTGC 2 cut(s) 18, 52
BcoDI GTCTC 2 cut(s) 38, 201
BfoI RGCGCY 1 cut(s) 473
BglI GCCNNNNNGGC 1 cut(s) 503
Bme18I GGWCC 1 cut(s) 292
BmgT120I GGNCC 1 cut(s) 292
Bpu14I TTCGAA 1 cut(s) 207
Bsa29I ATCGAT 1 cut(s) 78
BsaAI YACGTR 1 cut(s) 277
BsaJI CCNNGG 2 cut(s) 94, 498
BsaWI WCCGGW 1 cut(s) 232
BsaXI ACNNNNNCTCC 4 cut(s) 347, 377, 387, 417
Bsc4I CCNNNNNNNGG 4 cut(s) 31, 239, 289, 460
Bse118I RCCGGY 2 cut(s) 331, 506
Bse1I ACTGG 1 cut(s) 275
Bse3DI GCAATG 1 cut(s) 16
BseCI ATCGAT 1 cut(s) 78
BseDI CCNNGG 2 cut(s) 94, 498
BseGI GGATG 2 cut(s) 413, 469
BseLI CCNNNNNNNGG 4 cut(s) 31, 239, 289, 460
BseMI GCAATG 1 cut(s) 16
BseMII CTCAG 1 cut(s) 47
BseNI ACTGG 1 cut(s) 275
BseX3I CGGCCG 4 cut(s) 130, 217, 495, 504
BseXI GCAGC 2 cut(s) 147, 524
BsgI GTGCAG 1 cut(s) 58
Bsh1236I CGCG 4 cut(s) 287, 494, 500, 542
Bsh1285I CGRYCG 5 cut(s) 133, 220, 498, 507, 546
BshFI GGCC 5 cut(s) 132, 219, 325, 497, 506
BshVI ATCGAT 1 cut(s) 78
BsiEI CGRYCG 5 cut(s) 133, 220, 498, 507, 546
BsiSI CCGG 4 cut(s) 233, 309, 332, 507
BsiWI CGTACG 1 cut(s) 221
BslFI GGGAC 1 cut(s) 69
BslI CCNNNNNNNGG 4 cut(s) 31, 239, 289, 460
BsmAI GTCTC 2 cut(s) 38, 201
BsmFI GGGAC 1 cut(s) 69
BsnI GGCC 5 cut(s) 132, 219, 325, 497, 506
Bsp119I TTCGAA 1 cut(s) 207
Bsp143I GATC 4 cut(s) 75, 139, 543, 551
BspANI GGCC 5 cut(s) 132, 219, 325, 497, 506
BspCNI CTCAG 1 cut(s) 48
BspDI ATCGAT 1 cut(s) 78
BspFNI CGCG 4 cut(s) 287, 494, 500, 542
BspT104I TTCGAA 1 cut(s) 207
BsrBI CCGCTC 3 cut(s) 240, 245, 264
BsrDI GCAATG 1 cut(s) 16
BsrFI RCCGGY 2 cut(s) 331, 506
BsrI ACTGG 1 cut(s) 275
BssAI RCCGGY 2 cut(s) 331, 506
BssECI CCNNGG 2 cut(s) 94, 498
BssMI GATC 4 cut(s) 75, 139, 543, 551
BssT1I CCWWGG 1 cut(s) 94
Bst4CI ACNGT 3 cut(s) 226, 301, 423
Bst6I CTCTTC 1 cut(s) 508
BstAPI GCANNNNNTGC 1 cut(s) 15
BstBAI YACGTR 1 cut(s) 277
BstBI TTCGAA 1 cut(s) 207
BstC8I GCNNGC 3 cut(s) 214, 388, 455
BstDEI CTNAG 1 cut(s) 56
BstDSI CCRYGG 1 cut(s) 498
BstENI CCTNNNNNAGG 1 cut(s) 29
BstF5I GGATG 2 cut(s) 413, 469
BstFNI CGCG 4 cut(s) 287, 494, 500, 542
BstH2I RGCGCY 1 cut(s) 473
BstHHI GCGC 3 cut(s) 386, 472, 542
BstKTI GATC 4 cut(s) 78, 142, 546, 554
BstMAI GTCTC 2 cut(s) 38, 201
BstMBI GATC 4 cut(s) 75, 139, 543, 551
BstMCI CGRYCG 5 cut(s) 133, 220, 498, 507, 546
BstMWI GCNNNNNNNGC 3 cut(s) 15, 500, 503
BstNSI RCATGY 3 cut(s) 51, 216, 390
BstUI CGCG 4 cut(s) 287, 494, 500, 542
BstV1I GCAGC 2 cut(s) 147, 524
BstZI CGGCCG 4 cut(s) 130, 217, 495, 504
Bsu15I ATCGAT 1 cut(s) 78
BsuRI GGCC 5 cut(s) 132, 219, 325, 497, 506
BsuTUI ATCGAT 1 cut(s) 78
BtgI CCRYGG 1 cut(s) 498
BtsCI GGATG 2 cut(s) 413, 469
BtsI GCAGTG 1 cut(s) 46
BtsIMutI CAGTG 1 cut(s) 46
Cac8I GCNNGC 3 cut(s) 214, 388, 455
CaiI CAGNNNCTG 1 cut(s) 199
CciNI GCGGCCGC 1 cut(s) 495
CfoI GCGC 3 cut(s) 386, 472, 542
Cfr10I RCCGGY 2 cut(s) 331, 506
Cfr13I GGNCC 1 cut(s) 292
Cfr42I CCGCGG 1 cut(s) 501
ClaI ATCGAT 1 cut(s) 78
Csp6I GTAC 2 cut(s) 222, 419
CviAII CATG 4 cut(s) 48, 213, 387, 427
CviQI GTAC 2 cut(s) 222, 419
DdeI CTNAG 1 cut(s) 56
DpnI GATC 4 cut(s) 77, 141, 545, 553
DpnII GATC 4 cut(s) 75, 139, 543, 551
EaeI YGGCCR 4 cut(s) 130, 217, 495, 504
EagI CGGCCG 4 cut(s) 130, 217, 495, 504
Eam1104I CTCTTC 1 cut(s) 508
EarI CTCTTC 1 cut(s) 508
EciI GGCGGA 1 cut(s) 148
EclXI CGGCCG 4 cut(s) 130, 217, 495, 504
Eco130I CCWWGG 1 cut(s) 94
Eco47I GGWCC 1 cut(s) 292
Eco52I CGGCCG 4 cut(s) 130, 217, 495, 504
Eco57I CTGAAG 1 cut(s) 500
Eco72I CACGTG 1 cut(s) 277
EcoNI CCTNNNNNAGG 1 cut(s) 29
EcoT14I CCWWGG 1 cut(s) 94
EcoT22I ATGCAT 1 cut(s) 53
ErhI CCWWGG 1 cut(s) 94
FaeI CATG 4 cut(s) 51, 216, 390, 430
FaiI YATR 5 cut(s) 49, 53, 214, 388, 428
FaqI GGGAC 1 cut(s) 69
FatI CATG 4 cut(s) 47, 212, 386, 426
FauI CCCGC 1 cut(s) 257
FokI GGATG 2 cut(s) 400, 476
GlaI GCGC 3 cut(s) 385, 471, 541
HaeII RGCGCY 1 cut(s) 473
HaeIII GGCC 5 cut(s) 132, 219, 325, 497, 506
HapII CCGG 4 cut(s) 233, 309, 332, 507
HhaI GCGC 3 cut(s) 386, 472, 542
Hin1II CATG 4 cut(s) 51, 216, 390, 430
Hin6I GCGC 3 cut(s) 384, 470, 540
HinP1I GCGC 3 cut(s) 384, 470, 540
HinfI GANTC 5 cut(s) 21, 89, 229, 343, 359
HpaII CCGG 4 cut(s) 233, 309, 332, 507
HphI GGTGA 2 cut(s) 238, 247
Hpy188I TCNGA 1 cut(s) 29
Hpy188III TCNNGA 3 cut(s) 86, 295, 547
Hpy99I CGWCG 1 cut(s) 440
HpyAV CCTTC 2 cut(s) 160, 525
HpyCH4III ACNGT 3 cut(s) 226, 301, 423
HpyCH4IV ACGT 2 cut(s) 276, 448
HpyCH4V TGCA 3 cut(s) 9, 39, 51
HpyF10VI GCNNNNNNNGC 3 cut(s) 15, 500, 503
HpyF3I CTNAG 1 cut(s) 56
HpySE526I ACGT 2 cut(s) 276, 448
Hsp92II CATG 4 cut(s) 51, 216, 390, 430
HspAI GCGC 3 cut(s) 384, 470, 540
KspI CCGCGG 1 cut(s) 501
Kzo9I GATC 4 cut(s) 75, 139, 543, 551
LmnI GCTCC 2 cut(s) 242, 534
Lsp1109I GCAGC 2 cut(s) 147, 524
MaeII ACGT 2 cut(s) 276, 448
MaeIII GTNAC 2 cut(s) 327, 367
MalI GATC 4 cut(s) 77, 141, 545, 553
MbiI CCGCTC 3 cut(s) 240, 245, 264
MboI GATC 4 cut(s) 75, 139, 543, 551
MboII GAAGA 1 cut(s) 525
MlyI GAGTC 2 cut(s) 30, 337
MmeI TCCRAC 1 cut(s) 441
MnlI CCTC 9 cut(s) 35, 51, 77, 125, 315, 373, 374, 413, 509
Mph1103I ATGCAT 1 cut(s) 53
MseI TTAA 1 cut(s) 577
MspA1I CMGCKG 1 cut(s) 500
MspI CCGG 4 cut(s) 233, 309, 332, 507
MvnI CGCG 4 cut(s) 287, 494, 500, 542
MwoI GCNNNNNNNGC 3 cut(s) 15, 500, 503
NdeII GATC 4 cut(s) 75, 139, 543, 551
NlaIII CATG 4 cut(s) 51, 216, 390, 430
NmeAIII GCCGAG 1 cut(s) 44
NmuCI GTSAC 1 cut(s) 367
NotI GCGGCCGC 1 cut(s) 495
NsiI ATGCAT 1 cut(s) 53
NspI RCATGY 3 cut(s) 51, 216, 390
NspV TTCGAA 1 cut(s) 207
PaeI GCATGC 2 cut(s) 216, 390
PcsI WCGNNNNNNNCGW 3 cut(s) 84, 135, 363
PfeI GAWTC 3 cut(s) 89, 229, 359
Pfl23II CGTACG 1 cut(s) 221
PflMI CCANNNNNTGG 1 cut(s) 460
Ple19I CGATCG 1 cut(s) 546
PleI GAGTC 2 cut(s) 29, 337
PmaCI CACGTG 1 cut(s) 277
PmlI CACGTG 1 cut(s) 277
PpsI GAGTC 2 cut(s) 29, 337
Ppu21I YACGTR 1 cut(s) 277
PspCI CACGTG 1 cut(s) 277
PspLI CGTACG 1 cut(s) 221
PspPI GGNCC 1 cut(s) 292
PstNI CAGNNNCTG 1 cut(s) 199
PvuI CGATCG 1 cut(s) 546
RsaI GTAC 2 cut(s) 223, 420
RsaNI GTAC 2 cut(s) 222, 419
SacII CCGCGG 1 cut(s) 501
SaqAI TTAA 1 cut(s) 577
Sau3AI GATC 4 cut(s) 75, 139, 543, 551
Sau96I GGNCC 1 cut(s) 292
SchI GAGTC 2 cut(s) 30, 337
SetI ASST 8 cut(s) 8, 62, 110, 279, 354, 405, 451, 539
SfiI GGCCNNNNNGGCC 1 cut(s) 503
Sfr303I CCGCGG 1 cut(s) 501
SfuI TTCGAA 1 cut(s) 207
SgrBI CCGCGG 1 cut(s) 501
SinI GGWCC 1 cut(s) 292
SphI GCATGC 2 cut(s) 216, 390
StyI CCWWGG 1 cut(s) 94
TaaI ACNGT 3 cut(s) 226, 301, 423
TaiI ACGT 2 cut(s) 279, 451
TaqI TCGA 6 cut(s) 78, 207, 260, 341, 375, 546
TauI GCSGC 8 cut(s) 135, 219, 290, 315, 497, 500, 503, 506
TfiI GAWTC 3 cut(s) 89, 229, 359
Tru1I TTAA 1 cut(s) 577
Tru9I TTAA 1 cut(s) 577
TscAI CASTG 1 cut(s) 46
TseFI GTSAC 1 cut(s) 367
TseI GCWGC 3 cut(s) 6, 135, 537
Tsp45I GTSAC 1 cut(s) 367
TspDTI ATGAA 1 cut(s) 142
TspGWI ACGGA 3 cut(s) 59, 355, 406
TspRI CASTG 1 cut(s) 46
Van91I CCANNNNNTGG 1 cut(s) 460
VpaK11BI GGWCC 1 cut(s) 292
XagI CCTNNNNNAGG 1 cut(s) 29
XceI RCATGY 3 cut(s) 51, 216, 390
Zsp2I ATGCAT 1 cut(s) 53
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.