Rh6AG059300

lob domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0003322
Physical Location & Seq
Reverse (-)
8933653 .. 8934334
682 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG059300.1

Sequence Viewer

Length: 591 bp
ATGCTACGTCAATGCATAGAGTGGATGGAAGACCCTCAAGCTCAAGCTCACGCCACCGTTTTCGTCGCCAAGTTCTTCGGCCGCGCCGGCCTCCTCTCCTTCATCAACGCTGTCTCCGAAAGCCAAAGACCAGCTTTGTTTCAGTCTTTGTTGTTTGAGGCGGTAGGGAGGACTATAAATCCGGTGAACGGAGCGACGGGACTTCTTTTGGCTGGGAACTGGAAGGTCTGCCAGGCTGCGGTGGAGAAGGTTCTGAGCGGCGGCGCGTTGGAGCCACTTCCTGAGTACAGTTGTCGTGGCATTCATCACGTTCGACAACAACGGCGGGATGAGCGCTATTCGTCCAAGTACTCGACCAAAAAGAGGCCGGCTCTGTTGGCTTTCGACGACGACGACGATGATGAACGGCCTGATCTTGATCTTAGCTTGAAGGCATCGTCGGAGTTGCATAGAGATGATCACGATAGAGCGGCGACGCCGTCGTCTGTGGAAGGCTCAGAAACGACGATGTTGTCAAGAAGTGGTTCGTCGTACGCAGATTGTACTACTAATGATTCAGAGGGAACAAGGCTTCTAAGACTATTCATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

196

Amino Acids

21.72

Weight (kDa)

5.56

Isoelectric Point (pI)

46.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 4 - 83 4.6e-14 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 481, 511
AccBSI CCGCTC 2 cut(s) 258, 470
AccII CGCG 2 cut(s) 84, 266
AciI CCGC 7 cut(s) 82, 161, 239, 258, 261, 325, 470
AcoI YGGCCR 1 cut(s) 79
AcyI GRCGYC 1 cut(s) 476
AfaI GTAC 4 cut(s) 287, 350, 533, 544
AfeI AGCGCT 1 cut(s) 335
AfiI CCNNNNNNNGG 3 cut(s) 188, 238, 363
AgsI TTSAA 1 cut(s) 430
AjnI CCWGG 1 cut(s) 231
AluBI AGCT 4 cut(s) 41, 47, 134, 426
AluI AGCT 4 cut(s) 41, 47, 134, 426
Alw26I GTCTC 1 cut(s) 118
Aor51HI AGCGCT 1 cut(s) 335
AoxI GGCC 4 cut(s) 79, 88, 365, 407
ApeKI GCWGC 1 cut(s) 236
ArsI GACNNNNNNTTYG 1 cut(s) 570
Asp700I GAANNNNTTC 1 cut(s) 523
AspLEI GCGC 3 cut(s) 86, 266, 336
AsuHPI GGTGA 1 cut(s) 196
BbsI GAAGAC 1 cut(s) 36
BbvI GCAGC 1 cut(s) 223
BccI CCATC 1 cut(s) 19
BceAI ACGGC 3 cut(s) 338, 422, 463
BciT130I CCWGG 1 cut(s) 233
BclI TGATCA 1 cut(s) 457
BcoDI GTCTC 1 cut(s) 118
BfoI RGCGCY 1 cut(s) 337
BglI GCCNNNNNGGC 1 cut(s) 87
BisI GCNGC 5 cut(s) 82, 237, 259, 262, 471
BlsI GCNGC 5 cut(s) 83, 238, 260, 263, 472
BmcAI AGTACT 1 cut(s) 350
Bme1390I CCNGG 1 cut(s) 233
BmiI GGNNCC 1 cut(s) 273
BmrFI CCNGG 1 cut(s) 233
BmsI GCATC 1 cut(s) 443
BpiI GAAGAC 1 cut(s) 36
BplI GAGNNNNNCTC 2 cut(s) 355, 387
BpuEI CTTGAG 2 cut(s) 21, 27
BsaBI GATNNNNATC 1 cut(s) 417
BsaHI GRCGYC 1 cut(s) 476
BsaWI WCCGGW 1 cut(s) 181
BsaXI ACNNNNNCTCC 2 cut(s) 98, 128
Bsc4I CCNNNNNNNGG 3 cut(s) 188, 238, 363
Bse118I RCCGGY 2 cut(s) 86, 367
Bse1I ACTGG 1 cut(s) 224
Bse8I GATNNNNATC 1 cut(s) 417
BseBI CCWGG 1 cut(s) 233
BseGI GGATG 2 cut(s) 30, 334
BseJI GATNNNNATC 1 cut(s) 417
BseLI CCNNNNNNNGG 3 cut(s) 188, 238, 363
BseMII CTCAG 3 cut(s) 245, 273, 510
BseNI ACTGG 1 cut(s) 224
BseRI GAGGAG 1 cut(s) 83
BseX3I CGGCCG 1 cut(s) 79
BseXI GCAGC 1 cut(s) 223
BseYI CCCAGC 1 cut(s) 212
Bsh1236I CGCG 2 cut(s) 84, 266
Bsh1285I CGRYCG 1 cut(s) 82
BshFI GGCC 4 cut(s) 81, 90, 367, 409
BsiEI CGRYCG 1 cut(s) 82
BsiSI CCGG 3 cut(s) 87, 182, 368
BsiWI CGTACG 1 cut(s) 531
BslFI GGGAC 1 cut(s) 213
BslI CCNNNNNNNGG 3 cut(s) 188, 238, 363
BsmAI GTCTC 1 cut(s) 118
BsmFI GGGAC 1 cut(s) 213
BsmI GAATGC 1 cut(s) 300
BsnI GGCC 4 cut(s) 81, 90, 367, 409
Bsp143I GATC 3 cut(s) 412, 418, 457
BspACI CCGC 7 cut(s) 82, 161, 239, 258, 261, 325, 470
BspANI GGCC 4 cut(s) 81, 90, 367, 409
BspCNI CTCAG 3 cut(s) 246, 274, 509
BspFNI CGCG 2 cut(s) 84, 266
BspLI GGNNCC 1 cut(s) 273
BsrBI CCGCTC 2 cut(s) 258, 470
BsrFI RCCGGY 2 cut(s) 86, 367
BsrI ACTGG 1 cut(s) 224
BssAI RCCGGY 2 cut(s) 86, 367
BssMI GATC 3 cut(s) 412, 418, 457
BssNI GRCGYC 1 cut(s) 476
Bst2UI CCWGG 1 cut(s) 233
Bst4CI ACNGT 2 cut(s) 58, 290
BstACI GRCGYC 1 cut(s) 476
BstC8I GCNNGC 2 cut(s) 88, 369
BstDEI CTNAG 5 cut(s) 254, 282, 422, 496, 575
BstF5I GGATG 2 cut(s) 30, 334
BstFNI CGCG 2 cut(s) 84, 266
BstH2I RGCGCY 1 cut(s) 337
BstHHI GCGC 3 cut(s) 86, 266, 336
BstKTI GATC 3 cut(s) 415, 421, 460
BstMAI GTCTC 1 cut(s) 118
BstMBI GATC 3 cut(s) 412, 418, 457
BstMCI CGRYCG 1 cut(s) 82
BstMWI GCNNNNNNNGC 3 cut(s) 87, 331, 377
BstNI CCWGG 1 cut(s) 233
BstSCI CCNGG 1 cut(s) 231
BstUI CGCG 2 cut(s) 84, 266
BstV1I GCAGC 1 cut(s) 223
BstV2I GAAGAC 1 cut(s) 36
BstZI CGGCCG 1 cut(s) 79
BsuRI GGCC 4 cut(s) 81, 90, 367, 409
BtsCI GGATG 2 cut(s) 30, 334
Cac8I GCNNGC 2 cut(s) 88, 369
CfoI GCGC 3 cut(s) 86, 266, 336
Cfr10I RCCGGY 2 cut(s) 86, 367
CseI GACGC 1 cut(s) 484
Csp6I GTAC 4 cut(s) 286, 349, 532, 543
CviQI GTAC 4 cut(s) 286, 349, 532, 543
DdeI CTNAG 5 cut(s) 254, 282, 422, 496, 575
DpnI GATC 3 cut(s) 414, 420, 459
DpnII GATC 3 cut(s) 412, 418, 457
DrdI GACNNNNNNGTC 2 cut(s) 481, 511
DseDI GACNNNNNNGTC 2 cut(s) 481, 511
EaeI YGGCCR 1 cut(s) 79
EagI CGGCCG 1 cut(s) 79
EclXI CGGCCG 1 cut(s) 79
Eco47III AGCGCT 1 cut(s) 335
Eco52I CGGCCG 1 cut(s) 79
EcoRII CCWGG 1 cut(s) 231
EcoT22I ATGCAT 1 cut(s) 17
FaiI YATR 3 cut(s) 17, 176, 450
FalI AAGNNNNNCTT 2 cut(s) 118, 150
FaqI GGGAC 1 cut(s) 213
FauI CCCGC 1 cut(s) 318
FbaI TGATCA 1 cut(s) 457
Fnu4HI GCNGC 5 cut(s) 82, 237, 259, 262, 471
FokI GGATG 2 cut(s) 37, 341
Fsp4HI GCNGC 5 cut(s) 82, 237, 259, 262, 471
GlaI GCGC 3 cut(s) 85, 265, 335
GluI GCNGC 5 cut(s) 82, 237, 259, 262, 471
GsaI CCCAGC 1 cut(s) 216
HaeII RGCGCY 1 cut(s) 337
HaeIII GGCC 4 cut(s) 81, 90, 367, 409
HapII CCGG 3 cut(s) 87, 182, 368
HgaI GACGC 1 cut(s) 484
HhaI GCGC 3 cut(s) 86, 266, 336
Hin1I GRCGYC 1 cut(s) 476
Hin6I GCGC 3 cut(s) 84, 264, 334
HinP1I GCGC 3 cut(s) 84, 264, 334
HinfI GANTC 1 cut(s) 554
HpaII CCGG 3 cut(s) 87, 182, 368
HphI GGTGA 1 cut(s) 196
Hpy166II GTNNAC 1 cut(s) 187
Hpy188I TCNGA 5 cut(s) 118, 255, 442, 499, 559
Hpy188III TCNNGA 4 cut(s) 281, 416, 461, 516
Hpy8I GTNNAC 1 cut(s) 187
HpyAV CCTTC 5 cut(s) 109, 217, 241, 424, 485
HpyCH4III ACNGT 2 cut(s) 58, 290
HpyCH4IV ACGT 2 cut(s) 7, 309
HpyCH4V TGCA 2 cut(s) 15, 448
HpyF10VI GCNNNNNNNGC 3 cut(s) 87, 331, 377
HpyF3I CTNAG 5 cut(s) 254, 282, 422, 496, 575
HpySE526I ACGT 2 cut(s) 7, 309
Hsp92I GRCGYC 1 cut(s) 476
HspAI GCGC 3 cut(s) 84, 264, 334
KroI GCCGGC 2 cut(s) 86, 367
KroNI GCCGGC 2 cut(s) 88, 369
Ksp22I TGATCA 1 cut(s) 457
Kzo9I GATC 3 cut(s) 412, 418, 457
LmnI GCTCC 2 cut(s) 191, 271
Lsp1109I GCAGC 1 cut(s) 223
LweI GCATC 1 cut(s) 443
MaeII ACGT 2 cut(s) 7, 309
MalI GATC 3 cut(s) 414, 420, 459
MbiI CCGCTC 2 cut(s) 258, 470
MboI GATC 3 cut(s) 412, 418, 457
MboII GAAGA 2 cut(s) 41, 67
MmeI TCCRAC 2 cut(s) 249, 420
MnlI CCTC 7 cut(s) 45, 101, 104, 151, 162, 357, 553
Mph1103I ATGCAT 1 cut(s) 17
MroNI GCCGGC 2 cut(s) 86, 367
MroXI GAANNNNTTC 1 cut(s) 523
MslI CAYNNNNRTG 1 cut(s) 453
MspI CCGG 3 cut(s) 87, 182, 368
MspR9I CCNGG 1 cut(s) 233
Mva1269I GAATGC 1 cut(s) 300
MvaI CCWGG 1 cut(s) 233
MvnI CGCG 2 cut(s) 84, 266
MwoI GCNNNNNNNGC 3 cut(s) 87, 331, 377
NaeI GCCGGC 2 cut(s) 88, 369
NdeII GATC 3 cut(s) 412, 418, 457
NgoMIV GCCGGC 2 cut(s) 86, 367
NlaIV GGNNCC 1 cut(s) 273
NsiI ATGCAT 1 cut(s) 17
PcsI WCGNNNNNNNCGW 3 cut(s) 114, 390, 393
PctI GAATGC 1 cut(s) 300
PdiI GCCGGC 2 cut(s) 88, 369
PdmI GAANNNNTTC 1 cut(s) 523
PfeI GAWTC 1 cut(s) 554
Pfl23II CGTACG 1 cut(s) 531
PflFI GACNNNGTC 1 cut(s) 478
PkrI GCNGC 5 cut(s) 83, 238, 260, 263, 472
Psp6I CCWGG 1 cut(s) 231
PspFI CCCAGC 1 cut(s) 212
PspGI CCWGG 1 cut(s) 231
PspLI CGTACG 1 cut(s) 531
PspN4I GGNNCC 1 cut(s) 273
PsyI GACNNNGTC 1 cut(s) 478
RsaI GTAC 4 cut(s) 287, 350, 533, 544
RsaNI GTAC 4 cut(s) 286, 349, 532, 543
RseI CAYNNNNRTG 1 cut(s) 453
SatI GCNGC 5 cut(s) 82, 237, 259, 262, 471
Sau3AI GATC 3 cut(s) 412, 418, 457
ScaI AGTACT 1 cut(s) 350
ScrFI CCNGG 1 cut(s) 233
SetI ASST 8 cut(s) 10, 43, 49, 136, 228, 252, 312, 428
SfaNI GCATC 1 cut(s) 443
SfiI GGCCNNNNNGGCC 1 cut(s) 87
SmiMI CAYNNNNRTG 1 cut(s) 453
SmlI CTYRAG 2 cut(s) 36, 42
SmoI CTYRAG 2 cut(s) 36, 42
SsiI CCGC 7 cut(s) 82, 161, 239, 258, 261, 325, 470
StyD4I CCNGG 1 cut(s) 231
TaaI ACNGT 2 cut(s) 58, 290
TaiI ACGT 2 cut(s) 10, 312
TaqI TCGA 3 cut(s) 313, 353, 384
TatI WGTACW 3 cut(s) 285, 348, 542
TauI GCSGC 4 cut(s) 84, 261, 264, 473
TfiI GAWTC 1 cut(s) 554
TseI GCWGC 1 cut(s) 236
TspDTI ATGAA 4 cut(s) 91, 293, 417, 574
TspGWI ACGGA 1 cut(s) 204
Tth111I GACNNNGTC 1 cut(s) 478
XmnI GAANNNNTTC 1 cut(s) 523
ZrmI AGTACT 1 cut(s) 350
Zsp2I ATGCAT 1 cut(s) 17
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.