pycom05g09600

lob domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0003322
Physical Location & Seq
Reverse (-)
12813624 .. 12814492
869 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g09600.1

Sequence Viewer

Length: 648 bp
ATGAGTTGCAATGGATGCCGAGTTCTAAGAAAGGGTTGCAGTGACAACTGCATCCTTAGGCAGTGCCTACAATGGATGGAAGATCCCCAAGCTCAAGCCCACGCCACCGTTTTTGTGGCCAAGTTCTTTGGACGCGCCGGCCTCTTCTCCTTCATCAACGCCGTCTCTGAGTCCCAACGACCCGCTTTGTTTCAGTCGTTATTATTTGAGGCGGTGGGGCGGACTATGAATCCGGTAAATGGGGCGATGGGGCTTCTTTTGAGTGGGAAGTGGGAGGTGTGCCAGGGGGCGATGGAGACGGTGTTACGTGGCGGCGCGTTGGAGCCACTTCCCGAGTATAGTCTTGACATCCATTATGTTCGTGAACATCAGGTTCGAGAAGTACAACGGCAGTCTACCAAGAGGAAGAGGCCTAATTTTGATGTCAATGATAATGATGATTACGTGGAGAATTTCCGATCTCCCGATCTCAATCTTAGCTTGACATCTGCAACTGGATTGATGTCGAGGACGAAACGTAGGGATTGTAGAGCGGCAACGCCGTCAGTTGAACACTCAGAAACGACAACGTTGGGGAGTTCTTCACCAGAGAATAATTGTACTGCTGGTAATTTAGAGAGAACAAAGCTTCTGAGGTTATTCATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

216

Amino Acids

24.05

Weight (kDa)

8.45

Isoelectric Point (pI)

54.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 2 - 100 1.8e-23 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 533
AccI GTMKAC 1 cut(s) 395
AccII CGCG 2 cut(s) 135, 317
AciI CCGC 5 cut(s) 183, 212, 220, 312, 533
AclI AACGTT 1 cut(s) 569
AclWI GGATC 1 cut(s) 77
AcoI YGGCCR 1 cut(s) 117
AcsI RAATTY 1 cut(s) 451
AfaI GTAC 2 cut(s) 384, 601
AfiI CCNNNNNNNGG 1 cut(s) 239
AgsI TTSAA 1 cut(s) 551
AjnI CCWGG 1 cut(s) 282
AloI GAACNNNNNNTCC 1 cut(s) 38
AluBI AGCT 3 cut(s) 92, 480, 628
AluI AGCT 3 cut(s) 92, 480, 628
Alw26I GTCTC 2 cut(s) 169, 290
AlwI GGATC 1 cut(s) 77
Ama87I CYCGRG 1 cut(s) 332
AoxI GGCC 3 cut(s) 117, 139, 410
ApoI RAATTY 1 cut(s) 451
AspLEI GCGC 2 cut(s) 137, 317
AsuHPI GGTGA 1 cut(s) 576
AvaI CYCGRG 1 cut(s) 332
AxyI CCTNAGG 1 cut(s) 56
BalI TGGCCA 1 cut(s) 119
BccI CCATC 3 cut(s) 70, 241, 286
BceAI ACGGC 3 cut(s) 146, 404, 526
BciT130I CCWGG 1 cut(s) 284
BcoDI GTCTC 2 cut(s) 169, 290
BisI GCNGC 2 cut(s) 313, 534
BlsI GCNGC 2 cut(s) 314, 535
Bme1390I CCNGG 1 cut(s) 284
BmeT110I CYCGRG 1 cut(s) 332
BmiI GGNNCC 1 cut(s) 324
BmrFI CCNGG 1 cut(s) 284
BmsI GCATC 2 cut(s) 5, 60
BpuEI CTTGAG 1 cut(s) 78
BsaAI YACGTR 2 cut(s) 308, 445
BsaBI GATNNNNATC 1 cut(s) 471
BsaJI CCNNGG 1 cut(s) 283
BsaWI WCCGGW 1 cut(s) 232
BsaXI ACNNNNNCTCC 2 cut(s) 287, 317
Bsc4I CCNNNNNNNGG 1 cut(s) 239
Bse118I RCCGGY 1 cut(s) 137
Bse1I ACTGG 1 cut(s) 499
Bse21I CCTNAGG 1 cut(s) 56
Bse3DI GCAATG 1 cut(s) 16
Bse8I GATNNNNATC 1 cut(s) 471
BseBI CCWGG 1 cut(s) 284
BseDI CCNNGG 1 cut(s) 283
BseGI GGATG 4 cut(s) 20, 51, 81, 348
BseJI GATNNNNATC 1 cut(s) 471
BseLI CCNNNNNNNGG 1 cut(s) 239
BseMI GCAATG 1 cut(s) 16
BseMII CTCAG 3 cut(s) 159, 570, 623
BseNI ACTGG 1 cut(s) 499
Bsh1236I CGCG 2 cut(s) 135, 317
BshFI GGCC 3 cut(s) 119, 141, 412
BsiHKCI CYCGRG 1 cut(s) 332
BsiSI CCGG 2 cut(s) 138, 233
BslFI GGGAC 1 cut(s) 157
BslI CCNNNNNNNGG 1 cut(s) 239
BsmAI GTCTC 2 cut(s) 169, 290
BsmBI CGTCTC 2 cut(s) 169, 290
BsmFI GGGAC 1 cut(s) 157
BsnI GGCC 3 cut(s) 119, 141, 412
BsoBI CYCGRG 1 cut(s) 332
Bsp143I GATC 3 cut(s) 82, 458, 466
BspACI CCGC 5 cut(s) 183, 212, 220, 312, 533
BspANI GGCC 3 cut(s) 119, 141, 412
BspCNI CTCAG 3 cut(s) 160, 569, 624
BspFNI CGCG 2 cut(s) 135, 317
BspLI GGNNCC 1 cut(s) 324
BspPI GGATC 1 cut(s) 77
BsrBI CCGCTC 1 cut(s) 533
BsrDI GCAATG 1 cut(s) 16
BsrFI RCCGGY 1 cut(s) 137
BsrI ACTGG 1 cut(s) 499
BssAI RCCGGY 1 cut(s) 137
BssECI CCNNGG 1 cut(s) 283
BssMI GATC 3 cut(s) 82, 458, 466
Bst2UI CCWGG 1 cut(s) 284
Bst4CI ACNGT 2 cut(s) 109, 301
Bst6I CTCTTC 2 cut(s) 149, 401
BstAPI GCANNNNNTGC 1 cut(s) 15
BstBAI YACGTR 2 cut(s) 308, 445
BstC8I GCNNGC 1 cut(s) 139
BstDEI CTNAG 6 cut(s) 26, 56, 168, 476, 556, 632
BstF5I GGATG 4 cut(s) 20, 51, 81, 348
BstFNI CGCG 2 cut(s) 135, 317
BstHHI GCGC 2 cut(s) 137, 317
BstKTI GATC 3 cut(s) 85, 461, 469
BstMAI GTCTC 2 cut(s) 169, 290
BstMBI GATC 3 cut(s) 82, 458, 466
BstMWI GCNNNNNNNGC 1 cut(s) 15
BstNI CCWGG 1 cut(s) 284
BstSCI CCNGG 1 cut(s) 282
BstUI CGCG 2 cut(s) 135, 317
BstX2I RGATCY 1 cut(s) 82
BstYI RGATCY 1 cut(s) 82
Bsu36I CCTNAGG 1 cut(s) 56
BsuRI GGCC 3 cut(s) 119, 141, 412
BtgZI GCGATG 2 cut(s) 260, 305
BtsCI GGATG 4 cut(s) 20, 51, 81, 348
BtsI GCAGTG 2 cut(s) 46, 68
BtsIMutI CAGTG 2 cut(s) 46, 68
Cac8I GCNNGC 1 cut(s) 139
CfoI GCGC 2 cut(s) 137, 317
Cfr10I RCCGGY 1 cut(s) 137
CseI GACGC 1 cut(s) 141
Csp6I GTAC 2 cut(s) 383, 600
CspCI CAANNNNNGTGG 2 cut(s) 94, 129
CviJI RGCY 9 cut(s) 92, 98, 119, 141, 253, 325, 412, 480, 628
CviKI_1 RGCY 9 cut(s) 92, 98, 119, 141, 253, 325, 412, 480, 628
CviQI GTAC 2 cut(s) 383, 600
DdeI CTNAG 6 cut(s) 26, 56, 168, 476, 556, 632
DpnI GATC 3 cut(s) 84, 460, 468
DpnII GATC 3 cut(s) 82, 458, 466
EaeI YGGCCR 1 cut(s) 117
Eam1104I CTCTTC 2 cut(s) 149, 401
EarI CTCTTC 2 cut(s) 149, 401
EciI GGCGGA 1 cut(s) 235
Eco147I AGGCCT 1 cut(s) 412
Eco81I CCTNAGG 1 cut(s) 56
Eco88I CYCGRG 1 cut(s) 332
EcoRII CCWGG 1 cut(s) 282
Esp3I CGTCTC 2 cut(s) 169, 290
FaiI YATR 3 cut(s) 227, 339, 357
FaqI GGGAC 1 cut(s) 157
FauI CCCGC 1 cut(s) 190
FblI GTMKAC 1 cut(s) 395
Fnu4HI GCNGC 2 cut(s) 313, 534
FokI GGATG 4 cut(s) 27, 38, 88, 335
Fsp4HI GCNGC 2 cut(s) 313, 534
GlaI GCGC 2 cut(s) 136, 316
GluI GCNGC 2 cut(s) 313, 534
HaeIII GGCC 3 cut(s) 119, 141, 412
HapII CCGG 2 cut(s) 138, 233
HgaI GACGC 1 cut(s) 141
HhaI GCGC 2 cut(s) 137, 317
Hin6I GCGC 2 cut(s) 135, 315
HinP1I GCGC 2 cut(s) 135, 315
HindIII AAGCTT 1 cut(s) 626
HinfI GANTC 2 cut(s) 170, 229
HpaII CCGG 2 cut(s) 138, 233
HphI GGTGA 1 cut(s) 576
Hpy166II GTNNAC 2 cut(s) 365, 396
Hpy188I TCNGA 4 cut(s) 169, 458, 559, 633
Hpy188III TCNNGA 5 cut(s) 332, 344, 362, 377, 464
Hpy8I GTNNAC 2 cut(s) 365, 396
HpyAV CCTTC 1 cut(s) 160
HpyCH4III ACNGT 2 cut(s) 109, 301
HpyCH4IV ACGT 4 cut(s) 307, 444, 517, 569
HpyCH4V TGCA 4 cut(s) 9, 39, 51, 491
HpyF10VI GCNNNNNNNGC 1 cut(s) 15
HpyF3I CTNAG 6 cut(s) 26, 56, 168, 476, 556, 632
HpySE526I ACGT 4 cut(s) 307, 444, 517, 569
HspAI GCGC 2 cut(s) 135, 315
KroI GCCGGC 1 cut(s) 137
KroNI GCCGGC 1 cut(s) 139
Kzo9I GATC 3 cut(s) 82, 458, 466
LmnI GCTCC 1 cut(s) 322
LpnPI CCDG 8 cut(s) 151, 246, 269, 296, 356, 480, 591, 600
LweI GCATC 2 cut(s) 5, 60
MaeII ACGT 4 cut(s) 307, 444, 517, 569
MaeIII GTNAC 2 cut(s) 41, 303
MalI GATC 3 cut(s) 84, 460, 468
MbiI CCGCTC 1 cut(s) 533
MboI GATC 3 cut(s) 82, 458, 466
MboII GAAGA 4 cut(s) 92, 136, 418, 573
MflI RGATCY 1 cut(s) 82
MlsI TGGCCA 1 cut(s) 119
MluCI AATT 4 cut(s) 415, 451, 595, 610
MluNI TGGCCA 1 cut(s) 119
MlyI GAGTC 1 cut(s) 179
MmeI TCCRAC 1 cut(s) 300
MnlI CCTC 7 cut(s) 152, 202, 268, 396, 402, 501, 627
Mox20I TGGCCA 1 cut(s) 119
MroNI GCCGGC 1 cut(s) 137
MscI TGGCCA 1 cut(s) 119
Msp20I TGGCCA 1 cut(s) 119
MspI CCGG 2 cut(s) 138, 233
MspR9I CCNGG 1 cut(s) 284
MvaI CCWGG 1 cut(s) 284
MvnI CGCG 2 cut(s) 135, 317
MwoI GCNNNNNNNGC 1 cut(s) 15
NaeI GCCGGC 1 cut(s) 139
NdeII GATC 3 cut(s) 82, 458, 466
NgoMIV GCCGGC 1 cut(s) 137
NlaIV GGNNCC 1 cut(s) 324
NmeAIII GCCGAG 1 cut(s) 44
NmuCI GTSAC 1 cut(s) 41
PceI AGGCCT 1 cut(s) 412
PdiI GCCGGC 1 cut(s) 139
PfeI GAWTC 1 cut(s) 229
PkrI GCNGC 2 cut(s) 314, 535
PleI GAGTC 1 cut(s) 178
PpsI GAGTC 1 cut(s) 178
Ppu21I YACGTR 2 cut(s) 308, 445
Psp1406I AACGTT 1 cut(s) 569
Psp6I CCWGG 1 cut(s) 282
PspGI CCWGG 1 cut(s) 282
PspN4I GGNNCC 1 cut(s) 324
PsuI RGATCY 1 cut(s) 82
RsaI GTAC 2 cut(s) 384, 601
RsaNI GTAC 2 cut(s) 383, 600
SatI GCNGC 2 cut(s) 313, 534
Sau3AI GATC 3 cut(s) 82, 458, 466
SchI GAGTC 1 cut(s) 179
ScrFI CCNGG 1 cut(s) 284
SfaNI GCATC 2 cut(s) 5, 60
SmlI CTYRAG 1 cut(s) 93
SmoI CTYRAG 1 cut(s) 93
Sse9I AATT 4 cut(s) 415, 451, 595, 610
SseBI AGGCCT 1 cut(s) 412
SsiI CCGC 5 cut(s) 183, 212, 220, 312, 533
StuI AGGCCT 1 cut(s) 412
StyD4I CCNGG 1 cut(s) 282
TaaI ACNGT 2 cut(s) 109, 301
TaiI ACGT 4 cut(s) 310, 447, 520, 572
TaqI TCGA 2 cut(s) 376, 506
TasI AATT 4 cut(s) 415, 451, 595, 610
TatI WGTACW 2 cut(s) 382, 599
TauI GCSGC 2 cut(s) 315, 536
TfiI GAWTC 1 cut(s) 229
TscAI CASTG 2 cut(s) 46, 68
TseFI GTSAC 1 cut(s) 41
Tsp45I GTSAC 1 cut(s) 41
TspDTI ATGAA 3 cut(s) 142, 242, 631
TspRI CASTG 2 cut(s) 46, 68
XapI RAATTY 1 cut(s) 451
XcmI CCANNNNNNNNNTGG 1 cut(s) 112
XmiI GTMKAC 1 cut(s) 395
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.