Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0003322

Physical Location & Seq

Genomic Coordinates Reverse (-)

15940850 .. 15942038

Gene Structure 1189 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G142100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGAGTTGCAATGGATGCCGAGTCCTAAGAAAGGGTTGCAGTGACAATTGCATGCTCAGGCAATGCCTACAATGGATACAGGACCCCCAAGCTCAAGCCCACGCCACCGTTTTCGTTGCCAAGTTCTTTGGCCGCGCCGGCCTCTTCTCCTTCATCAACGCCGTCTCCGAATCCCAACGACCCGCTTTATTTCAGTCGTTGTTTTTTGAGGCGGTGGGGCGGACTATAAATCCGGTGAATGGAGCGACGGGGCTTCTTTTGAGTGGGAAGTGGGAGGTGTGCCAGGCGGCCGTGGAGACGGTGCTACGCGGCGGCACGTTGGAGCCACTTCCCGAGTACACTCGTGACGACCACCAAAATTGCGTTCATGATCATCATATTCGACTACAACGGCAGTCCCCCAAGAAGAAGAGGTCTAGCAATTTGGCTTTCGATGATACTGATGATCATGACGTGGCGAACTGCCAGCTGCCTGATCTTGATCTTTGCTTGACGGCTGCGGGTGGGTTGACGTCGAGGACCAACCGCGGAGATTGTAGGGCGGGGACGCCGTCCTCGGCGGAAGAGTCCGAAACGACGACGTTAGGAAGCAGTTCGTCGTCAGCAGATCATTGTTGTGGTAATAATTTGAAGGGAACGACAAAGCTTCTGAGGTTATTCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOB

Protein Analysis

222

Amino Acids

24.09

Weight (kDa)

7.01

Isoelectric Point (pI)

46.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003322)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49940 AT5G67420 AT5G67420
fragaria_vesca	FvH4_2g04090 FvH4_2g33260 FvH4_2g33260
malus_domestica	MD02G1165000.v1.1 MD05G1097900.v1.1 MD08G1086800.v1.1 MD10G1103500.v1.1 MD15G1071500.v1.1
prunus_persica	Prupe.1G424400_v2.0.a1 Prupe.8G142100_v2.0.a1
pyrus_communis	pycom05g09600 pycom08g07110 pycom15g06730
rosa_chinensis	RchiOBHm_Chr6g0253441 RchiOBHm_Chr6g0309381
rosa_laevigata	RLG00000010571 RLG00000015018
rosa_multiflora	Rmu_sc0005426.1_g000011 Rmu_sc0005426.1_g000012 Rmu_sc0012466.1_g000002
rosa_roxburghii	Rroxscaffold_7G00159450
rosa_rugosa	Rorug05G0544300 Rorug06G0371700
rosa_samantha	Rh6AG059300 Rh6AG484800 Rh6BG052800 Rh6BG494000 Rh6CG050500 Rh6CG498900 Rh6DG047200 Rh6DG485200
rosa_wichuraiana	Rw0G004820 Rw6G042220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	515
AccII	CGCG	3 cut(s)	135, 309, 528
AcoI	YGGCCR	2 cut(s)	130, 288
AcyI	GRCGYC	2 cut(s)	512, 548
AfaI	GTAC	1 cut(s)	338
AfiI	CCNNNNNNNGG	2 cut(s)	31, 239
AgsI	TTSAA	1 cut(s)	631
AjiI	CACGTC	1 cut(s)	454
AjnI	CCWGG	1 cut(s)	282
AjuI	GAANNNNNNNTTGG	2 cut(s)	348, 380
AluBI	AGCT	3 cut(s)	92, 469, 646
AluI	AGCT	3 cut(s)	92, 469, 646
Alw26I	GTCTC	2 cut(s)	169, 290
Ama87I	CYCGRG	1 cut(s)	332
AoxI	GGCC	3 cut(s)	130, 139, 288
ApeKI	GCWGC	2 cut(s)	469, 497
Asp700I	GAANNNNTTC	1 cut(s)	592
AspLEI	GCGC	1 cut(s)	137
AspS9I	GGNCC	2 cut(s)	82, 519
AsuHPI	GGTGA	1 cut(s)	247
AvaI	CYCGRG	1 cut(s)	332
AvaII	GGWCC	2 cut(s)	82, 519
BauI	CACGAG	1 cut(s)	342
BbvI	GCAGC	2 cut(s)	456, 484
BceAI	ACGGC	5 cut(s)	146, 275, 407, 510, 535
BciT130I	CCWGG	1 cut(s)	284
BciVI	GTATCC	1 cut(s)	69
BclI	TGATCA	2 cut(s)	370, 445
BcoDI	GTCTC	2 cut(s)	169, 290
BfaI	CTAG	1 cut(s)	417
BfuI	GTATCC	1 cut(s)	69
BglI	GCCNNNNNGGC	1 cut(s)	138
BisI	GCNGC	6 cut(s)	133, 288, 310, 313, 470, 498
BlsI	GCNGC	6 cut(s)	134, 289, 311, 314, 471, 499
Bme1390I	CCNGG	1 cut(s)	284
Bme18I	GGWCC	2 cut(s)	82, 519
BmeT110I	CYCGRG	1 cut(s)	332
BmgBI	CACGTC	1 cut(s)	454
BmgT120I	GGNCC	2 cut(s)	82, 519
BmiI	GGNNCC	2 cut(s)	84, 324
BmrFI	CCNGG	1 cut(s)	284
BmsI	GCATC	1 cut(s)	5
Bpu10I	CCTNAGC	1 cut(s)	56
BpuEI	CTTGAG	1 cut(s)	78
BsaBI	GATNNNNATC	1 cut(s)	480
BsaHI	GRCGYC	2 cut(s)	512, 548
BsaJI	CCNNGG	3 cut(s)	291, 526, 555
BsaWI	WCCGGW	1 cut(s)	232
BsaXI	ACNNNNNCTCC	2 cut(s)	149, 179
Bsc4I	CCNNNNNNNGG	2 cut(s)	31, 239
Bse118I	RCCGGY	1 cut(s)	137
Bse3DI	GCAATG	2 cut(s)	16, 68
Bse8I	GATNNNNATC	1 cut(s)	480
BseBI	CCWGG	1 cut(s)	284
BseDI	CCNNGG	3 cut(s)	291, 526, 555
BseGI	GGATG	1 cut(s)	20
BseJI	GATNNNNATC	1 cut(s)	480
BseLI	CCNNNNNNNGG	2 cut(s)	31, 239
BseMI	GCAATG	2 cut(s)	16, 68
BseMII	CTCAG	2 cut(s)	70, 641
BseX3I	CGGCCG	1 cut(s)	288
BseXI	GCAGC	2 cut(s)	456, 484
Bsh1236I	CGCG	3 cut(s)	135, 309, 528
Bsh1285I	CGRYCG	1 cut(s)	291
BshFI	GGCC	3 cut(s)	132, 141, 290
BsiEI	CGRYCG	1 cut(s)	291
BsiHKCI	CYCGRG	1 cut(s)	332
BsiSI	CCGG	2 cut(s)	138, 233
BslFI	GGGAC	2 cut(s)	382, 559
BslI	CCNNNNNNNGG	2 cut(s)	31, 239
BsmAI	GTCTC	2 cut(s)	169, 290
BsmBI	CGTCTC	2 cut(s)	169, 290
BsmFI	GGGAC	2 cut(s)	382, 559
BsnI	GGCC	3 cut(s)	132, 141, 290
BsoBI	CYCGRG	1 cut(s)	332
Bsp143I	GATC	5 cut(s)	370, 445, 475, 481, 607
BspANI	GGCC	3 cut(s)	132, 141, 290
BspCNI	CTCAG	2 cut(s)	69, 642
BspFNI	CGCG	3 cut(s)	135, 309, 528
BspHI	TCATGA	2 cut(s)	367, 448
BspLI	GGNNCC	2 cut(s)	84, 324
BsrDI	GCAATG	2 cut(s)	16, 68
BsrFI	RCCGGY	1 cut(s)	137
BssAI	RCCGGY	1 cut(s)	137
BssECI	CCNNGG	3 cut(s)	291, 526, 555
BssMI	GATC	5 cut(s)	370, 445, 475, 481, 607
BssNI	GRCGYC	2 cut(s)	512, 548
BssSI	CACGAG	1 cut(s)	342
Bst2BI	CACGAG	1 cut(s)	342
Bst2UI	CCWGG	1 cut(s)	284
Bst4CI	ACNGT	2 cut(s)	109, 301
Bst6I	CTCTTC	3 cut(s)	149, 404, 558
BstACI	GRCGYC	2 cut(s)	512, 548
BstAPI	GCANNNNNTGC	1 cut(s)	15
BstC8I	GCNNGC	3 cut(s)	53, 139, 467
BstDEI	CTNAG	3 cut(s)	26, 56, 650
BstDSI	CCRYGG	2 cut(s)	291, 526
BstENI	CCTNNNNNAGG	1 cut(s)	29
BstF5I	GGATG	1 cut(s)	20
BstFNI	CGCG	3 cut(s)	135, 309, 528
BstHHI	GCGC	1 cut(s)	137
BstKTI	GATC	5 cut(s)	373, 448, 478, 484, 610
BstMAI	GTCTC	2 cut(s)	169, 290
BstMBI	GATC	5 cut(s)	370, 445, 475, 481, 607
BstMCI	CGRYCG	1 cut(s)	291
BstMWI	GCNNNNNNNGC	2 cut(s)	15, 138
BstNI	CCWGG	1 cut(s)	284
BstNSI	RCATGY	1 cut(s)	55
BstSCI	CCNGG	1 cut(s)	282
BstUI	CGCG	3 cut(s)	135, 309, 528
BstV1I	GCAGC	2 cut(s)	456, 484
BstZI	CGGCCG	1 cut(s)	288
BsuI	GTATCC	1 cut(s)	69
BsuRI	GGCC	3 cut(s)	132, 141, 290
BtgI	CCRYGG	2 cut(s)	291, 526
BtrI	CACGTC	1 cut(s)	454
BtsCI	GGATG	1 cut(s)	20
BtsI	GCAGTG	1 cut(s)	46
BtsIMutI	CAGTG	1 cut(s)	46
Cac8I	GCNNGC	3 cut(s)	53, 139, 467
CciI	TCATGA	2 cut(s)	367, 448
CfoI	GCGC	1 cut(s)	137
Cfr10I	RCCGGY	1 cut(s)	137
Cfr13I	GGNCC	2 cut(s)	82, 519
Cfr42I	CCGCGG	1 cut(s)	529
CseI	GACGC	1 cut(s)	556
Csp6I	GTAC	1 cut(s)	337
CspCI	CAANNNNNGTGG	2 cut(s)	341, 376
CviAII	CATG	3 cut(s)	52, 368, 449
CviQI	GTAC	1 cut(s)	337
DdeI	CTNAG	3 cut(s)	26, 56, 650
DpnI	GATC	5 cut(s)	372, 447, 477, 483, 609
DpnII	GATC	5 cut(s)	370, 445, 475, 481, 607
EaeI	YGGCCR	2 cut(s)	130, 288
EagI	CGGCCG	1 cut(s)	288
Eam1104I	CTCTTC	3 cut(s)	149, 404, 558
EarI	CTCTTC	3 cut(s)	149, 404, 558
EciI	GGCGGA	2 cut(s)	235, 575
EclXI	CGGCCG	1 cut(s)	288
Eco47I	GGWCC	2 cut(s)	82, 519
Eco52I	CGGCCG	1 cut(s)	288
Eco88I	CYCGRG	1 cut(s)	332
EcoNI	CCTNNNNNAGG	1 cut(s)	29
EcoO109I	RGGNCCY	1 cut(s)	82
EcoRII	CCWGG	1 cut(s)	282
Esp3I	CGTCTC	2 cut(s)	169, 290
FaeI	CATG	3 cut(s)	55, 371, 452
FaiI	YATR	5 cut(s)	53, 227, 369, 378, 450
FaqI	GGGAC	2 cut(s)	382, 559
FatI	CATG	3 cut(s)	51, 367, 448
FauI	CCCGC	3 cut(s)	190, 493, 535
FbaI	TGATCA	2 cut(s)	370, 445
Fnu4HI	GCNGC	6 cut(s)	133, 288, 310, 313, 470, 498
FokI	GGATG	1 cut(s)	27
Fsp4HI	GCNGC	6 cut(s)	133, 288, 310, 313, 470, 498
FspBI	CTAG	1 cut(s)	417
GlaI	GCGC	1 cut(s)	136
GluI	GCNGC	6 cut(s)	133, 288, 310, 313, 470, 498
HaeIII	GGCC	3 cut(s)	132, 141, 290
HapII	CCGG	2 cut(s)	138, 233
HgaI	GACGC	1 cut(s)	556
HhaI	GCGC	1 cut(s)	137
Hin1I	GRCGYC	2 cut(s)	512, 548
Hin1II	CATG	3 cut(s)	55, 371, 452
Hin6I	GCGC	1 cut(s)	135
HinP1I	GCGC	1 cut(s)	135
HincII	GTYRAC	1 cut(s)	510
HindII	GTYRAC	1 cut(s)	510
HindIII	AAGCTT	1 cut(s)	644
HinfI	GANTC	3 cut(s)	21, 170, 566
HpaII	CCGG	2 cut(s)	138, 233
HphI	GGTGA	1 cut(s)	247
Hpy166II	GTNNAC	2 cut(s)	339, 510
Hpy188I	TCNGA	3 cut(s)	169, 571, 651
Hpy188III	TCNNGA	5 cut(s)	332, 344, 368, 449, 479
Hpy8I	GTNNAC	2 cut(s)	339, 510
Hpy99I	CGWCG	5 cut(s)	250, 517, 580, 583, 601
HpyAV	CCTTC	2 cut(s)	160, 625
HpyCH4III	ACNGT	2 cut(s)	109, 301
HpyCH4IV	ACGT	4 cut(s)	317, 453, 512, 581
HpyCH4V	TGCA	3 cut(s)	9, 39, 51
HpyF10VI	GCNNNNNNNGC	2 cut(s)	15, 138
HpyF3I	CTNAG	3 cut(s)	26, 56, 650
HpySE526I	ACGT	4 cut(s)	317, 453, 512, 581
Hsp92I	GRCGYC	2 cut(s)	512, 548
Hsp92II	CATG	3 cut(s)	55, 371, 452
HspAI	GCGC	1 cut(s)	135
KroI	GCCGGC	1 cut(s)	137
KroNI	GCCGGC	1 cut(s)	139
Ksp22I	TGATCA	2 cut(s)	370, 445
KspI	CCGCGG	1 cut(s)	529
Kzo9I	GATC	5 cut(s)	370, 445, 475, 481, 607
LmnI	GCTCC	2 cut(s)	242, 322
LpnPI	CCDG	8 cut(s)	43, 65, 151, 246, 269, 296, 479, 486
Lsp1109I	GCAGC	2 cut(s)	456, 484
LweI	GCATC	1 cut(s)	5
MaeI	CTAG	1 cut(s)	417
MaeII	ACGT	4 cut(s)	317, 453, 512, 581
MaeIII	GTNAC	2 cut(s)	41, 344
MalI	GATC	5 cut(s)	372, 447, 477, 483, 609
MboI	GATC	5 cut(s)	370, 445, 475, 481, 607
MboII	GAAGA	4 cut(s)	136, 418, 421, 575
MfeI	CAATTG	1 cut(s)	46
MluCI	AATT	4 cut(s)	46, 358, 421, 625
MlyI	GAGTC	2 cut(s)	30, 575
MmeI	TCCRAC	1 cut(s)	300
MnlI	CCTC	7 cut(s)	152, 202, 268, 405, 510, 565, 645
MroNI	GCCGGC	1 cut(s)	137
MroXI	GAANNNNTTC	1 cut(s)	592
MslI	CAYNNNNRTG	1 cut(s)	615
MspA1I	CMGCKG	2 cut(s)	469, 528
MspI	CCGG	2 cut(s)	138, 233
MspR9I	CCNGG	1 cut(s)	284
MunI	CAATTG	1 cut(s)	46
MvaI	CCWGG	1 cut(s)	284
MvnI	CGCG	3 cut(s)	135, 309, 528
MwoI	GCNNNNNNNGC	2 cut(s)	15, 138
NaeI	GCCGGC	1 cut(s)	139
NdeII	GATC	5 cut(s)	370, 445, 475, 481, 607
NgoMIV	GCCGGC	1 cut(s)	137
NlaIII	CATG	3 cut(s)	55, 371, 452
NlaIV	GGNNCC	2 cut(s)	84, 324
NmeAIII	GCCGAG	2 cut(s)	44, 536
NmuCI	GTSAC	2 cut(s)	41, 344
NspI	RCATGY	1 cut(s)	55
PaeI	GCATGC	1 cut(s)	55
PagI	TCATGA	2 cut(s)	367, 448
PcsI	WCGNNNNNNNCGW	1 cut(s)	165
PdiI	GCCGGC	1 cut(s)	139
PdmI	GAANNNNTTC	1 cut(s)	592
PfeI	GAWTC	1 cut(s)	170
PflFI	GACNNNGTC	1 cut(s)	550
PkrI	GCNGC	6 cut(s)	134, 289, 311, 314, 471, 499
PleI	GAGTC	2 cut(s)	29, 574
PpsI	GAGTC	2 cut(s)	29, 574
PpuMI	RGGWCCY	1 cut(s)	82
Psp5II	RGGWCCY	1 cut(s)	82
Psp6I	CCWGG	1 cut(s)	282
PspGI	CCWGG	1 cut(s)	282
PspN4I	GGNNCC	2 cut(s)	84, 324
PspPI	GGNCC	2 cut(s)	82, 519
PspPPI	RGGWCCY	1 cut(s)	82
PsyI	GACNNNGTC	1 cut(s)	550
PvuII	CAGCTG	1 cut(s)	469
RsaI	GTAC	1 cut(s)	338
RsaNI	GTAC	1 cut(s)	337
RseI	CAYNNNNRTG	1 cut(s)	615
SacII	CCGCGG	1 cut(s)	529
SatI	GCNGC	6 cut(s)	133, 288, 310, 313, 470, 498
Sau3AI	GATC	5 cut(s)	370, 445, 475, 481, 607
Sau96I	GGNCC	2 cut(s)	82, 519
SchI	GAGTC	2 cut(s)	30, 575
ScrFI	CCNGG	1 cut(s)	284
SfaNI	GCATC	1 cut(s)	5
SfiI	GGCCNNNNNGGCC	1 cut(s)	138
Sfr303I	CCGCGG	1 cut(s)	529
SgrBI	CCGCGG	1 cut(s)	529
SinI	GGWCC	2 cut(s)	82, 519
SmiMI	CAYNNNNRTG	1 cut(s)	615
SmlI	CTYRAG	1 cut(s)	93
SmoI	CTYRAG	1 cut(s)	93
SphI	GCATGC	1 cut(s)	55
Sse9I	AATT	4 cut(s)	46, 358, 421, 625
SspMI	CTAG	1 cut(s)	417
StyD4I	CCNGG	1 cut(s)	282
TaaI	ACNGT	2 cut(s)	109, 301
TaiI	ACGT	4 cut(s)	320, 456, 515, 584
TaqI	TCGA	3 cut(s)	382, 432, 515
TasI	AATT	4 cut(s)	46, 358, 421, 625
TatI	WGTACW	1 cut(s)	336
TauI	GCSGC	4 cut(s)	135, 290, 312, 315
TfiI	GAWTC	1 cut(s)	170
TscAI	CASTG	1 cut(s)	46
TseFI	GTSAC	2 cut(s)	41, 344
TseI	GCWGC	2 cut(s)	469, 497
Tsp45I	GTSAC	2 cut(s)	41, 344
TspDTI	ATGAA	3 cut(s)	142, 356, 649
TspRI	CASTG	1 cut(s)	46
Tth111I	GACNNNGTC	1 cut(s)	550
VpaK11BI	GGWCC	2 cut(s)	82, 519
XagI	CCTNNNNNAGG	1 cut(s)	29
XceI	RCATGY	1 cut(s)	55
XmnI	GAANNNNTTC	1 cut(s)	592
XspI	CTAG	1 cut(s)	417
ZraI	GACGTC	1 cut(s)	513

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.