MD05G1097900.v1.1

Lateral organ boundaries (LOB) domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0003322
Physical Location & Seq
Reverse (-)
20376511 .. 20377731
1221 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1097900.v1.1.491

Sequence Viewer

Length: 648 bp
ATGAGTTGCAATGGATGCCGAGTTCTAAGAAAGGGTTGCAGTGATAACTGCATCCTTAGGCAATGCCTACAATGGATGGAAGATCCCCAAGCTCAAGCCCACGCCACCGTTTTTGTGGCCAAGTTCTTTGGACGCGCCGGTCTCTTCTCCTTCATCAACGCCGTCTCTGAGTCCCAACGACCCGCTTTGTTTCAGTCGTTATTATTTGAGGCGGTGGGGCGGACTATGAATCCGGTAAATGGGGCGACGGGCCTTCTTTTGAGTGGGAAGTGGGAGGTGTGCCAGGCGGCGATGGAGACTGTGTTACGTGGCGGCTCGTTGGAGCCACTTCCCGAGTATAGTCGTGACATCCATTATGTTCGTGAACATCAGGTTCGAGAAGTACAAAGGCAGTCTACCAAGAAGAAGAGGCCTAATTTTGATGTCAATGATAATGATGATTACGTGGAGAATTTCCGATCGCCCGATCTCAATCTTAGCTTGACATCTGCAACTGAGTTGACGTCGAGGACGAAACGTAGGGATTGTAGAGCGGCAACGCCGTCAGTTGAAGACTCGGAAACGACGACGTTGGGGAGTTCTTCACCGGAGAATAATTGTACTGCTGGTAATTTAGAGAGAACAAAGCTTCTGAGGTTATTCATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

216

Amino Acids

24.08

Weight (kDa)

8.13

Isoelectric Point (pI)

55.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 2 - 100 8e-24 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 138
AatII GACGTC 1 cut(s) 506
AccBSI CCGCTC 1 cut(s) 533
AccI GTMKAC 1 cut(s) 395
AccII CGCG 1 cut(s) 135
AciI CCGC 6 cut(s) 183, 212, 220, 287, 312, 533
AclWI GGATC 1 cut(s) 77
AcoI YGGCCR 1 cut(s) 117
AcsI RAATTY 1 cut(s) 451
AcyI GRCGYC 1 cut(s) 503
AfaI GTAC 2 cut(s) 384, 601
AfiI CCNNNNNNNGG 1 cut(s) 239
AgsI TTSAA 1 cut(s) 551
AjnI CCWGG 1 cut(s) 282
AloI GAACNNNNNNTCC 1 cut(s) 38
AluBI AGCT 3 cut(s) 92, 480, 628
AluI AGCT 3 cut(s) 92, 480, 628
Alw26I GTCTC 3 cut(s) 146, 169, 290
AlwI GGATC 1 cut(s) 77
Ama87I CYCGRG 1 cut(s) 332
AoxI GGCC 3 cut(s) 117, 250, 410
ApoI RAATTY 1 cut(s) 451
AspLEI GCGC 1 cut(s) 137
AspS9I GGNCC 1 cut(s) 250
AsuHPI GGTGA 1 cut(s) 576
AvaI CYCGRG 1 cut(s) 332
AxyI CCTNAGG 1 cut(s) 56
BalI TGGCCA 1 cut(s) 119
BbsI GAAGAC 1 cut(s) 558
BccI CCATC 2 cut(s) 70, 286
BceAI ACGGC 2 cut(s) 146, 526
BciT130I CCWGG 1 cut(s) 284
BcoDI GTCTC 3 cut(s) 146, 169, 290
BisI GCNGC 3 cut(s) 288, 313, 534
BlsI GCNGC 3 cut(s) 289, 314, 535
Bme1390I CCNGG 1 cut(s) 284
BmeT110I CYCGRG 1 cut(s) 332
BmgT120I GGNCC 1 cut(s) 250
BmiI GGNNCC 1 cut(s) 324
BmrFI CCNGG 1 cut(s) 284
BmsI GCATC 2 cut(s) 5, 60
BpiI GAAGAC 1 cut(s) 558
BpuEI CTTGAG 1 cut(s) 78
BsaAI YACGTR 2 cut(s) 308, 445
BsaBI GATNNNNATC 1 cut(s) 471
BsaHI GRCGYC 1 cut(s) 503
BsaI GGTCTC 1 cut(s) 146
BsaWI WCCGGW 2 cut(s) 232, 586
BsaXI ACNNNNNCTCC 2 cut(s) 287, 317
Bsc4I CCNNNNNNNGG 1 cut(s) 239
Bse118I RCCGGY 1 cut(s) 137
Bse21I CCTNAGG 1 cut(s) 56
Bse3DI GCAATG 2 cut(s) 16, 68
Bse8I GATNNNNATC 1 cut(s) 471
BseBI CCWGG 1 cut(s) 284
BseGI GGATG 4 cut(s) 20, 51, 81, 348
BseJI GATNNNNATC 1 cut(s) 471
BseLI CCNNNNNNNGG 1 cut(s) 239
BseMI GCAATG 2 cut(s) 16, 68
BseMII CTCAG 3 cut(s) 159, 486, 623
Bsh1236I CGCG 1 cut(s) 135
Bsh1285I CGRYCG 1 cut(s) 461
BshFI GGCC 3 cut(s) 119, 252, 412
BsiEI CGRYCG 1 cut(s) 461
BsiHKCI CYCGRG 1 cut(s) 332
BsiSI CCGG 3 cut(s) 138, 233, 587
BslFI GGGAC 1 cut(s) 157
BslI CCNNNNNNNGG 1 cut(s) 239
BsmAI GTCTC 3 cut(s) 146, 169, 290
BsmBI CGTCTC 1 cut(s) 169
BsmFI GGGAC 1 cut(s) 157
BsnI GGCC 3 cut(s) 119, 252, 412
Bso31I GGTCTC 1 cut(s) 146
BsoBI CYCGRG 1 cut(s) 332
Bsp143I GATC 3 cut(s) 82, 458, 466
BspACI CCGC 6 cut(s) 183, 212, 220, 287, 312, 533
BspANI GGCC 3 cut(s) 119, 252, 412
BspCNI CTCAG 3 cut(s) 160, 487, 624
BspFNI CGCG 1 cut(s) 135
BspLI GGNNCC 1 cut(s) 324
BspPI GGATC 1 cut(s) 77
BspTNI GGTCTC 1 cut(s) 146
BsrBI CCGCTC 1 cut(s) 533
BsrDI GCAATG 2 cut(s) 16, 68
BsrFI RCCGGY 1 cut(s) 137
BssAI RCCGGY 1 cut(s) 137
BssMI GATC 3 cut(s) 82, 458, 466
BssNI GRCGYC 1 cut(s) 503
Bst2UI CCWGG 1 cut(s) 284
Bst4CI ACNGT 2 cut(s) 109, 301
Bst6I CTCTTC 2 cut(s) 149, 401
BstACI GRCGYC 1 cut(s) 503
BstAPI GCANNNNNTGC 1 cut(s) 15
BstBAI YACGTR 2 cut(s) 308, 445
BstDEI CTNAG 6 cut(s) 26, 56, 168, 476, 495, 632
BstF5I GGATG 4 cut(s) 20, 51, 81, 348
BstFNI CGCG 1 cut(s) 135
BstHHI GCGC 1 cut(s) 137
BstKTI GATC 3 cut(s) 85, 461, 469
BstMAI GTCTC 3 cut(s) 146, 169, 290
BstMBI GATC 3 cut(s) 82, 458, 466
BstMCI CGRYCG 1 cut(s) 461
BstMWI GCNNNNNNNGC 1 cut(s) 15
BstNI CCWGG 1 cut(s) 284
BstSCI CCNGG 1 cut(s) 282
BstUI CGCG 1 cut(s) 135
BstV2I GAAGAC 1 cut(s) 558
BstX2I RGATCY 1 cut(s) 82
BstYI RGATCY 1 cut(s) 82
Bsu36I CCTNAGG 1 cut(s) 56
BsuRI GGCC 3 cut(s) 119, 252, 412
BtgZI GCGATG 1 cut(s) 305
BtsCI GGATG 4 cut(s) 20, 51, 81, 348
BtsI GCAGTG 1 cut(s) 46
BtsIMutI CAGTG 1 cut(s) 46
CfoI GCGC 1 cut(s) 137
Cfr10I RCCGGY 1 cut(s) 137
Cfr13I GGNCC 1 cut(s) 250
CseI GACGC 1 cut(s) 141
Csp6I GTAC 2 cut(s) 383, 600
CspCI CAANNNNNGTGG 2 cut(s) 94, 129
CviJI RGCY 9 cut(s) 92, 98, 119, 252, 315, 325, 412, 480, 628
CviKI_1 RGCY 9 cut(s) 92, 98, 119, 252, 315, 325, 412, 480, 628
CviQI GTAC 2 cut(s) 383, 600
DdeI CTNAG 6 cut(s) 26, 56, 168, 476, 495, 632
DpnI GATC 3 cut(s) 84, 460, 468
DpnII GATC 3 cut(s) 82, 458, 466
DrdI GACNNNNNNGTC 1 cut(s) 138
DseDI GACNNNNNNGTC 1 cut(s) 138
EaeI YGGCCR 1 cut(s) 117
Eam1104I CTCTTC 2 cut(s) 149, 401
EarI CTCTTC 2 cut(s) 149, 401
EciI GGCGGA 1 cut(s) 235
Eco147I AGGCCT 1 cut(s) 412
Eco31I GGTCTC 1 cut(s) 146
Eco81I CCTNAGG 1 cut(s) 56
Eco88I CYCGRG 1 cut(s) 332
EcoRII CCWGG 1 cut(s) 282
Esp3I CGTCTC 1 cut(s) 169
FaiI YATR 3 cut(s) 227, 339, 357
FaqI GGGAC 1 cut(s) 157
FauI CCCGC 1 cut(s) 190
FblI GTMKAC 1 cut(s) 395
Fnu4HI GCNGC 3 cut(s) 288, 313, 534
FokI GGATG 4 cut(s) 27, 38, 88, 335
Fsp4HI GCNGC 3 cut(s) 288, 313, 534
GlaI GCGC 1 cut(s) 136
GluI GCNGC 3 cut(s) 288, 313, 534
HaeIII GGCC 3 cut(s) 119, 252, 412
HapII CCGG 3 cut(s) 138, 233, 587
HgaI GACGC 1 cut(s) 141
HhaI GCGC 1 cut(s) 137
Hin1I GRCGYC 1 cut(s) 503
Hin6I GCGC 1 cut(s) 135
HinP1I GCGC 1 cut(s) 135
HincII GTYRAC 1 cut(s) 501
HindII GTYRAC 1 cut(s) 501
HindIII AAGCTT 1 cut(s) 626
HinfI GANTC 3 cut(s) 170, 229, 554
HpaII CCGG 3 cut(s) 138, 233, 587
HphI GGTGA 1 cut(s) 576
Hpy166II GTNNAC 3 cut(s) 365, 396, 501
Hpy188I TCNGA 4 cut(s) 169, 458, 559, 633
Hpy188III TCNNGA 4 cut(s) 332, 344, 362, 377
Hpy8I GTNNAC 3 cut(s) 365, 396, 501
Hpy99I CGWCG 4 cut(s) 250, 508, 568, 571
HpyAV CCTTC 2 cut(s) 160, 263
HpyCH4III ACNGT 2 cut(s) 109, 301
HpyCH4IV ACGT 5 cut(s) 307, 444, 503, 517, 569
HpyCH4V TGCA 4 cut(s) 9, 39, 51, 491
HpyF10VI GCNNNNNNNGC 1 cut(s) 15
HpyF3I CTNAG 6 cut(s) 26, 56, 168, 476, 495, 632
HpySE526I ACGT 5 cut(s) 307, 444, 503, 517, 569
Hsp92I GRCGYC 1 cut(s) 503
HspAI GCGC 1 cut(s) 135
Kzo9I GATC 3 cut(s) 82, 458, 466
LmnI GCTCC 1 cut(s) 322
LpnPI CCDG 7 cut(s) 151, 246, 269, 296, 356, 591, 600
LweI GCATC 2 cut(s) 5, 60
MaeII ACGT 5 cut(s) 307, 444, 503, 517, 569
MaeIII GTNAC 2 cut(s) 303, 344
MalI GATC 3 cut(s) 84, 460, 468
MbiI CCGCTC 1 cut(s) 533
MboI GATC 3 cut(s) 82, 458, 466
MboII GAAGA 6 cut(s) 92, 136, 415, 418, 563, 573
MflI RGATCY 1 cut(s) 82
MlsI TGGCCA 1 cut(s) 119
MluCI AATT 4 cut(s) 415, 451, 595, 610
MluNI TGGCCA 1 cut(s) 119
MlyI GAGTC 2 cut(s) 179, 548
MmeI TCCRAC 1 cut(s) 300
MnlI CCTC 5 cut(s) 202, 268, 402, 501, 627
Mox20I TGGCCA 1 cut(s) 119
MscI TGGCCA 1 cut(s) 119
Msp20I TGGCCA 1 cut(s) 119
MspI CCGG 3 cut(s) 138, 233, 587
MspR9I CCNGG 1 cut(s) 284
MvaI CCWGG 1 cut(s) 284
MvnI CGCG 1 cut(s) 135
MwoI GCNNNNNNNGC 1 cut(s) 15
NdeII GATC 3 cut(s) 82, 458, 466
NlaIV GGNNCC 1 cut(s) 324
NmeAIII GCCGAG 1 cut(s) 44
NmuCI GTSAC 1 cut(s) 344
PceI AGGCCT 1 cut(s) 412
PcsI WCGNNNNNNNCGW 2 cut(s) 509, 563
PfeI GAWTC 1 cut(s) 229
PkrI GCNGC 3 cut(s) 289, 314, 535
Ple19I CGATCG 1 cut(s) 461
PleI GAGTC 2 cut(s) 178, 548
PpsI GAGTC 2 cut(s) 178, 548
Ppu21I YACGTR 2 cut(s) 308, 445
Psp6I CCWGG 1 cut(s) 282
PspGI CCWGG 1 cut(s) 282
PspN4I GGNNCC 1 cut(s) 324
PspPI GGNCC 1 cut(s) 250
PsuI RGATCY 1 cut(s) 82
PvuI CGATCG 1 cut(s) 461
RsaI GTAC 2 cut(s) 384, 601
RsaNI GTAC 2 cut(s) 383, 600
SatI GCNGC 3 cut(s) 288, 313, 534
Sau3AI GATC 3 cut(s) 82, 458, 466
Sau96I GGNCC 1 cut(s) 250
SchI GAGTC 2 cut(s) 179, 548
ScrFI CCNGG 1 cut(s) 284
SfaNI GCATC 2 cut(s) 5, 60
SmlI CTYRAG 1 cut(s) 93
SmoI CTYRAG 1 cut(s) 93
Sse9I AATT 4 cut(s) 415, 451, 595, 610
SseBI AGGCCT 1 cut(s) 412
SsiI CCGC 6 cut(s) 183, 212, 220, 287, 312, 533
StuI AGGCCT 1 cut(s) 412
StyD4I CCNGG 1 cut(s) 282
TaaI ACNGT 2 cut(s) 109, 301
TaiI ACGT 5 cut(s) 310, 447, 506, 520, 572
TaqI TCGA 2 cut(s) 376, 506
TasI AATT 4 cut(s) 415, 451, 595, 610
TatI WGTACW 2 cut(s) 382, 599
TauI GCSGC 3 cut(s) 290, 315, 536
TfiI GAWTC 1 cut(s) 229
TscAI CASTG 1 cut(s) 46
TseFI GTSAC 1 cut(s) 344
Tsp45I GTSAC 1 cut(s) 344
TspDTI ATGAA 3 cut(s) 142, 242, 631
TspRI CASTG 1 cut(s) 46
XapI RAATTY 1 cut(s) 451
XcmI CCANNNNNNNNNTGG 1 cut(s) 112
XmiI GTMKAC 1 cut(s) 395
ZraI GACGTC 1 cut(s) 504
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.