pycom15g06730

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0003322
Physical Location & Seq
Forward (+)
4141459 .. 4142244
786 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g06730.1

Sequence Viewer

Length: 681 bp
ATGAGCTGCAACGGGTGCCGAGTACTCCGGAAGGGATGCAGCGCGACATGCGTACTCAGGCCGTGCCTGCACTGGATCGACTCTCCCCAAGCCCAAGGCAACGCCACCCTGTTCCTCGCCAAGTTCTTCGGCCGCAGCGATCTCCTCTCCTTCGTCTCCGCCGTACCGGAAACCCAACGCCCCGCTCTGTTTCAGTCTCTGCTGTTCGAAGCGTGTGGCCGCACGGTGAACCCGGTGAACGGAGCGGTGGGGCTTCTGTCGAGCGGGAACTGGCAAGTGTGCCAGTCGGCCGTCGAGACGGTACTCTCCGGAGGCGTTTTGAGGACGTTACCTGCGTTTACTGCGCCGAGCCTCGATGAGTCTTCGGACATGTTCAGCAGAGGCACATGCACCCCACAAAACCGCTGCTATCAATCCGTACCGTCGGCGTCGGCGTACTATGGTGCGGAGCGAATCCAACCGTTCGAGGTGGCGGGGTTCTCTCTGAAGCCGAATCTCGCGGCGGGAGAGAGAGGAATAGGGAGGGGAATGAGGAGCTACATAAGTGCCGCGATGGATCAGCGGCTGAGAGATACGGTGTCGTTTGATTCGGAAGAGTCGGCAATGACTACGACAACGACGAGGAGCTTTAAAAGCGGCGGCGATCTGAAGGATTGCAAGCTTCTGAACCTTTTCGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

227

Amino Acids

24.34

Weight (kDa)

8.56

Isoelectric Point (pI)

46.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 2 - 100 1.1e-24 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 340
AccB1I GGYRCC 1 cut(s) 15
AccBSI CCGCTC 3 cut(s) 185, 245, 264
AccII CGCG 3 cut(s) 44, 500, 551
AccIII TCCGGA 2 cut(s) 27, 308
AclWI GGATC 2 cut(s) 83, 564
AcoI YGGCCR 3 cut(s) 130, 217, 288
AcuI CTGAAG 2 cut(s) 506, 668
AcyI GRCGYC 1 cut(s) 428
AfaI GTAC 6 cut(s) 24, 54, 165, 303, 420, 437
AfiI CCNNNNNNNGG 1 cut(s) 239
AflIII ACRYGT 1 cut(s) 369
AluBI AGCT 4 cut(s) 6, 537, 627, 661
AluI AGCT 4 cut(s) 6, 537, 627, 661
Alw26I GTCTC 3 cut(s) 160, 201, 290
AlwI GGATC 2 cut(s) 83, 564
AlwNI CAGNNNCTG 2 cut(s) 199, 565
Aor13HI TCCGGA 2 cut(s) 27, 308
AoxI GGCC 4 cut(s) 59, 130, 217, 288
ApeKI GCWGC 4 cut(s) 6, 39, 135, 405
Asp700I GAANNNNTTC 1 cut(s) 671
AspLEI GCGC 2 cut(s) 44, 346
AsuC2I CCSGG 1 cut(s) 233
AsuHPI GGTGA 2 cut(s) 238, 247
AsuII TTCGAA 1 cut(s) 207
BanI GGYRCC 1 cut(s) 15
BbsI GAAGAC 1 cut(s) 354
BbvI GCAGC 3 cut(s) 51, 147, 392
BccI CCATC 1 cut(s) 547
BceAI ACGGC 3 cut(s) 46, 146, 275
BcnI CCSGG 1 cut(s) 233
BcoDI GTCTC 3 cut(s) 160, 201, 290
BfuAI ACCTGC 1 cut(s) 340
BmcAI AGTACT 1 cut(s) 24
Bme1390I CCNGG 1 cut(s) 233
BmiI GGNNCC 1 cut(s) 17
BmrFI CCNGG 1 cut(s) 233
BmsI GCATC 1 cut(s) 26
BpiI GAAGAC 1 cut(s) 354
Bpu14I TTCGAA 1 cut(s) 207
BpuMI CCSGG 1 cut(s) 233
BsaHI GRCGYC 1 cut(s) 428
BsaJI CCNNGG 1 cut(s) 94
BsaWI WCCGGW 3 cut(s) 27, 166, 308
Bsc4I CCNNNNNNNGG 1 cut(s) 239
Bse1I ACTGG 3 cut(s) 77, 275, 283
Bse3DI GCAATG 1 cut(s) 609
BseAI TCCGGA 2 cut(s) 27, 308
BseDI CCNNGG 1 cut(s) 94
BseGI GGATG 1 cut(s) 41
BseLI CCNNNNNNNGG 1 cut(s) 239
BseMI GCAATG 1 cut(s) 609
BseMII CTCAG 2 cut(s) 70, 557
BseNI ACTGG 3 cut(s) 77, 275, 283
BseRI GAGGAG 3 cut(s) 134, 547, 637
BseX3I CGGCCG 2 cut(s) 130, 288
BseXI GCAGC 3 cut(s) 51, 147, 392
BsgI GTGCAG 1 cut(s) 53
Bsh1236I CGCG 3 cut(s) 44, 500, 551
Bsh1285I CGRYCG 2 cut(s) 133, 291
BshFI GGCC 4 cut(s) 61, 132, 219, 290
BshNI GGYRCC 1 cut(s) 15
BsiEI CGRYCG 2 cut(s) 133, 291
BsiSI CCGG 4 cut(s) 28, 167, 233, 309
BslI CCNNNNNNNGG 1 cut(s) 239
BsmAI GTCTC 3 cut(s) 160, 201, 290
BsmBI CGTCTC 2 cut(s) 160, 290
BsnI GGCC 4 cut(s) 61, 132, 219, 290
Bsp119I TTCGAA 1 cut(s) 207
Bsp13I TCCGGA 2 cut(s) 27, 308
Bsp143I GATC 4 cut(s) 75, 139, 556, 643
BspANI GGCC 4 cut(s) 61, 132, 219, 290
BspCNI CTCAG 2 cut(s) 69, 558
BspEI TCCGGA 2 cut(s) 27, 308
BspFNI CGCG 3 cut(s) 44, 500, 551
BspLI GGNNCC 1 cut(s) 17
BspMI ACCTGC 1 cut(s) 340
BspPI GGATC 2 cut(s) 83, 564
BspT104I TTCGAA 1 cut(s) 207
BspT107I GGYRCC 1 cut(s) 15
BsrBI CCGCTC 3 cut(s) 185, 245, 264
BsrDI GCAATG 1 cut(s) 609
BsrI ACTGG 3 cut(s) 77, 275, 283
BssECI CCNNGG 1 cut(s) 94
BssMI GATC 4 cut(s) 75, 139, 556, 643
BssNI GRCGYC 1 cut(s) 428
BssT1I CCWWGG 1 cut(s) 94
Bst4CI ACNGT 5 cut(s) 226, 301, 423, 462, 577
Bst6I CTCTTC 1 cut(s) 588
BstACI GRCGYC 1 cut(s) 428
BstAPI GCANNNNNTGC 1 cut(s) 15
BstBI TTCGAA 1 cut(s) 207
BstC8I GCNNGC 2 cut(s) 68, 659
BstDEI CTNAG 2 cut(s) 56, 566
BstF5I GGATG 1 cut(s) 41
BstFNI CGCG 3 cut(s) 44, 500, 551
BstHHI GCGC 2 cut(s) 44, 346
BstKTI GATC 4 cut(s) 78, 142, 559, 646
BstMAI GTCTC 3 cut(s) 160, 201, 290
BstMBI GATC 4 cut(s) 75, 139, 556, 643
BstMCI CGRYCG 2 cut(s) 133, 291
BstMWI GCNNNNNNNGC 5 cut(s) 15, 48, 67, 341, 633
BstNSI RCATGY 3 cut(s) 51, 373, 390
BstSCI CCNGG 1 cut(s) 231
BstUI CGCG 3 cut(s) 44, 500, 551
BstV1I GCAGC 3 cut(s) 51, 147, 392
BstV2I GAAGAC 1 cut(s) 354
BstZI CGGCCG 2 cut(s) 130, 288
BsuRI GGCC 4 cut(s) 61, 132, 219, 290
BtgZI GCGATG 1 cut(s) 566
BtsCI GGATG 1 cut(s) 41
BtsIMutI CAGTG 1 cut(s) 70
BveI ACCTGC 1 cut(s) 340
Cac8I GCNNGC 2 cut(s) 68, 659
CaiI CAGNNNCTG 2 cut(s) 199, 565
CfoI GCGC 2 cut(s) 44, 346
CseI GACGC 1 cut(s) 417
Csp6I GTAC 6 cut(s) 23, 53, 164, 302, 419, 436
CviAII CATG 3 cut(s) 48, 370, 387
CviQI GTAC 6 cut(s) 23, 53, 164, 302, 419, 436
DdeI CTNAG 2 cut(s) 56, 566
DpnI GATC 4 cut(s) 77, 141, 558, 645
DpnII GATC 4 cut(s) 75, 139, 556, 643
DraI TTTAAA 1 cut(s) 631
EaeI YGGCCR 3 cut(s) 130, 217, 288
EagI CGGCCG 2 cut(s) 130, 288
Eam1104I CTCTTC 1 cut(s) 588
EarI CTCTTC 1 cut(s) 588
EciI GGCGGA 1 cut(s) 148
EclXI CGGCCG 2 cut(s) 130, 288
Eco130I CCWWGG 1 cut(s) 94
Eco52I CGGCCG 2 cut(s) 130, 288
Eco57I CTGAAG 2 cut(s) 506, 668
EcoT14I CCWWGG 1 cut(s) 94
ErhI CCWWGG 1 cut(s) 94
Esp3I CGTCTC 2 cut(s) 160, 290
FaeI CATG 3 cut(s) 51, 373, 390
FaiI YATR 5 cut(s) 49, 371, 388, 441, 542
FatI CATG 3 cut(s) 47, 369, 386
FauI CCCGC 4 cut(s) 190, 257, 466, 496
FokI GGATG 1 cut(s) 48
GlaI GCGC 2 cut(s) 43, 345
HaeIII GGCC 4 cut(s) 61, 132, 219, 290
HapII CCGG 4 cut(s) 28, 167, 233, 309
HgaI GACGC 1 cut(s) 417
HhaI GCGC 2 cut(s) 44, 346
Hin1I GRCGYC 1 cut(s) 428
Hin1II CATG 3 cut(s) 51, 373, 390
Hin6I GCGC 2 cut(s) 42, 344
HinP1I GCGC 2 cut(s) 42, 344
HindIII AAGCTT 1 cut(s) 659
HinfI GANTC 6 cut(s) 80, 359, 453, 493, 587, 596
HpaII CCGG 4 cut(s) 28, 167, 233, 309
HphI GGTGA 2 cut(s) 238, 247
Hpy166II GTNNAC 3 cut(s) 229, 238, 339
Hpy188I TCNGA 5 cut(s) 367, 486, 592, 648, 666
Hpy188III TCNNGA 3 cut(s) 28, 295, 309
Hpy8I GTNNAC 3 cut(s) 229, 238, 339
Hpy99I CGWCG 4 cut(s) 296, 427, 433, 622
HpyAV CCTTC 3 cut(s) 25, 160, 643
HpyCH4III ACNGT 5 cut(s) 226, 301, 423, 462, 577
HpyCH4IV ACGT 1 cut(s) 326
HpyCH4V TGCA 5 cut(s) 9, 39, 70, 390, 657
HpyF10VI GCNNNNNNNGC 5 cut(s) 15, 48, 67, 341, 633
HpyF3I CTNAG 2 cut(s) 56, 566
HpySE526I ACGT 1 cut(s) 326
Hsp92I GRCGYC 1 cut(s) 428
Hsp92II CATG 3 cut(s) 51, 373, 390
HspAI GCGC 2 cut(s) 42, 344
Kpn2I TCCGGA 2 cut(s) 27, 308
Kzo9I GATC 4 cut(s) 75, 139, 556, 643
LmnI GCTCC 4 cut(s) 242, 448, 534, 624
Lsp1109I GCAGC 3 cut(s) 51, 147, 392
LweI GCATC 1 cut(s) 26
MaeII ACGT 1 cut(s) 326
MaeIII GTNAC 1 cut(s) 327
MalI GATC 4 cut(s) 77, 141, 558, 645
MbiI CCGCTC 3 cut(s) 185, 245, 264
MboI GATC 4 cut(s) 75, 139, 556, 643
MboII GAAGA 3 cut(s) 118, 354, 605
MlyI GAGTC 3 cut(s) 74, 368, 605
MmeI TCCRAC 1 cut(s) 481
MroI TCCGGA 2 cut(s) 27, 308
MroXI GAANNNNTTC 1 cut(s) 671
MseI TTAA 2 cut(s) 630, 679
MspA1I CMGCKG 2 cut(s) 405, 562
MspI CCGG 4 cut(s) 28, 167, 233, 309
MspR9I CCNGG 1 cut(s) 233
MvnI CGCG 3 cut(s) 44, 500, 551
MwoI GCNNNNNNNGC 5 cut(s) 15, 48, 67, 341, 633
NciI CCSGG 1 cut(s) 233
NdeII GATC 4 cut(s) 75, 139, 556, 643
NlaIII CATG 3 cut(s) 51, 373, 390
NlaIV GGNNCC 1 cut(s) 17
NmeAIII GCCGAG 2 cut(s) 44, 372
NspI RCATGY 3 cut(s) 51, 373, 390
NspV TTCGAA 1 cut(s) 207
PciI ACATGT 1 cut(s) 369
PcsI WCGNNNNNNNCGW 5 cut(s) 135, 159, 332, 431, 617
PdmI GAANNNNTTC 1 cut(s) 671
PfeI GAWTC 3 cut(s) 453, 493, 587
PleI GAGTC 3 cut(s) 74, 367, 604
PpsI GAGTC 3 cut(s) 74, 367, 604
PscI ACATGT 1 cut(s) 369
PspN4I GGNNCC 1 cut(s) 17
PstNI CAGNNNCTG 2 cut(s) 199, 565
RsaI GTAC 6 cut(s) 24, 54, 165, 303, 420, 437
RsaNI GTAC 6 cut(s) 23, 53, 164, 302, 419, 436
SaqAI TTAA 2 cut(s) 630, 679
Sau3AI GATC 4 cut(s) 75, 139, 556, 643
ScaI AGTACT 1 cut(s) 24
SchI GAGTC 3 cut(s) 74, 368, 605
ScrFI CCNGG 1 cut(s) 233
SetI ASST 8 cut(s) 8, 329, 334, 471, 539, 629, 663, 672
SfaNI GCATC 1 cut(s) 26
SfuI TTCGAA 1 cut(s) 207
StyD4I CCNGG 1 cut(s) 231
StyI CCWWGG 1 cut(s) 94
TaaI ACNGT 5 cut(s) 226, 301, 423, 462, 577
TaiI ACGT 1 cut(s) 329
TaqI TCGA 6 cut(s) 78, 207, 260, 294, 354, 465
TatI WGTACW 1 cut(s) 22
TauI GCSGC 7 cut(s) 135, 222, 503, 551, 565, 639, 642
TfiI GAWTC 3 cut(s) 453, 493, 587
Tru1I TTAA 2 cut(s) 630, 679
Tru9I TTAA 2 cut(s) 630, 679
TscAI CASTG 1 cut(s) 77
TseI GCWGC 4 cut(s) 6, 39, 135, 405
TspGWI ACGGA 2 cut(s) 255, 406
TspRI CASTG 1 cut(s) 77
XceI RCATGY 3 cut(s) 51, 373, 390
XmnI GAANNNNTTC 1 cut(s) 671
ZrmI AGTACT 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.