Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0003322

Physical Location & Seq

Genomic Coordinates Forward (+)

73278731 .. 73288562

Gene Structure 9832 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0544300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGGTTTTGCCCCGGTTTATGTTTTTACAATCTGATCGGAATATCCTATGTAAATGGCCGGATCGAGAGCGGACGTCCGCAACCCAGAAAAAGTGCGGATGTCGCTCCTCCGGCGTCAGGAAGGCCACGATGGCTGCGCTGCGGGTGCCTCTGGACATCCCGGACGGCCTCGAGCAAGCGGCGAAGGCAAAGGTGATCAGAAACTCAGTGGTGTGCGGCGAGCTCGCCGGAAACCATGGAAGCCCATCGAGCTCGACGTCGAACCCTTCGTCGACGACTCCAGCCGCTTCTGAACTGCTCCACGTCGTGGCTTGGTTATGTCCGGCAACAGAAACGCCGCCTTCACTGCTCAATCGAGGCCGGAGGAGCGACGTCCGCACTTTTTCTGGGTTGCGGACGTCCGCTCTCGAACGGTTTTGGTTTACGCCGGAACACAAGCTTTACTCTTGTTCTAAGACGACGTCGTCCCCGGAAACTTTTCCAGCAATTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOB

Protein Analysis

164

Amino Acids

17.94

Weight (kDa)

9.54

Isoelectric Point (pI)

60.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003322)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49940 AT5G67420 AT5G67420
fragaria_vesca	FvH4_2g04090 FvH4_2g33260 FvH4_2g33260
malus_domestica	MD02G1165000.v1.1 MD05G1097900.v1.1 MD08G1086800.v1.1 MD10G1103500.v1.1 MD15G1071500.v1.1
prunus_persica	Prupe.1G424400_v2.0.a1 Prupe.8G142100_v2.0.a1
pyrus_communis	pycom05g09600 pycom08g07110 pycom15g06730
rosa_chinensis	RchiOBHm_Chr6g0253441 RchiOBHm_Chr6g0309381
rosa_laevigata	RLG00000010571 RLG00000015018
rosa_multiflora	Rmu_sc0005426.1_g000011 Rmu_sc0005426.1_g000012 Rmu_sc0012466.1_g000002
rosa_roxburghii	Rroxscaffold_7G00159450
rosa_rugosa	Rorug05G0544300 Rorug06G0371700
rosa_samantha	Rh6AG059300 Rh6AG484800 Rh6BG052800 Rh6BG494000 Rh6CG050500 Rh6CG498900 Rh6DG047200 Rh6DG485200
rosa_wichuraiana	Rw0G004820 Rw6G042220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	463
AatII	GACGTC	5 cut(s)	77, 260, 375, 401, 464
AccB1I	GGYRCC	1 cut(s)	145
AccB7I	CCANNNNNTGG	1 cut(s)	307
AccBSI	CCGCTC	2 cut(s)	70, 404
AccI	GTMKAC	1 cut(s)	272
AclWI	GGATC	1 cut(s)	69
AcoI	YGGCCR	1 cut(s)	56
AcyI	GRCGYC	6 cut(s)	74, 114, 257, 372, 398, 461
AdeI	CACNNNGTG	1 cut(s)	307
AfiI	CCNNNNNNNGG	2 cut(s)	117, 307
AjiI	CACGTC	1 cut(s)	304
AluBI	AGCT	3 cut(s)	223, 252, 439
AluI	AGCT	3 cut(s)	223, 252, 439
Alw21I	GWGCWC	2 cut(s)	225, 254
AlwI	GGATC	1 cut(s)	69
Ama87I	CYCGRG	1 cut(s)	170
AoxI	GGCC	4 cut(s)	56, 123, 166, 358
ApeKI	GCWGC	2 cut(s)	134, 139
ArsI	GACNNNNNNTTYG	2 cut(s)	254, 286
Asp700I	GAANNNNTTC	1 cut(s)	477
AspLEI	GCGC	1 cut(s)	139
AsuC2I	CCSGG	3 cut(s)	13, 161, 470
AsuHPI	GGTGA	1 cut(s)	205
AvaI	CYCGRG	1 cut(s)	170
BanI	GGYRCC	1 cut(s)	145
BanII	GRGCYC	2 cut(s)	225, 254
Bbv12I	GWGCWC	2 cut(s)	225, 254
BbvI	GCAGC	2 cut(s)	121, 126
BccI	CCATC	2 cut(s)	124, 253
BceAI	ACGGC	1 cut(s)	181
BclI	TGATCA	1 cut(s)	195
BcnI	CCSGG	3 cut(s)	13, 161, 470
BglI	GCCNNNNNGGC	1 cut(s)	131
BisI	GCNGC	6 cut(s)	135, 140, 180, 217, 285, 338
BlsI	GCNGC	6 cut(s)	136, 141, 181, 218, 286, 339
Bme1390I	CCNGG	3 cut(s)	13, 161, 470
BmeT110I	CYCGRG	1 cut(s)	170
BmgBI	CACGTC	1 cut(s)	304
BmiI	GGNNCC	1 cut(s)	147
BmrFI	CCNGG	3 cut(s)	13, 161, 470
BpmI	CTGGAG	1 cut(s)	264
BpuMI	CCSGG	3 cut(s)	13, 161, 470
BsaHI	GRCGYC	6 cut(s)	74, 114, 257, 372, 398, 461
BsaJI	CCNNGG	3 cut(s)	11, 235, 468
Bsc4I	CCNNNNNNNGG	2 cut(s)	117, 307
BseDI	CCNNGG	3 cut(s)	11, 235, 468
BseGI	GGATG	2 cut(s)	104, 156
BseLI	CCNNNNNNNGG	2 cut(s)	117, 307
BseMII	CTCAG	1 cut(s)	219
BseRI	GAGGAG	2 cut(s)	97, 379
BseXI	GCAGC	2 cut(s)	121, 126
BshFI	GGCC	4 cut(s)	58, 125, 168, 360
BshNI	GGYRCC	1 cut(s)	145
BsiHKAI	GWGCWC	2 cut(s)	225, 254
BsiHKCI	CYCGRG	1 cut(s)	170
BsiSI	CCGG	9 cut(s)	13, 59, 111, 161, 228, 323, 361, 428, 470
BslFI	GGGAC	1 cut(s)	451
BslI	CCNNNNNNNGG	2 cut(s)	117, 307
BsmFI	GGGAC	1 cut(s)	451
BsnI	GGCC	4 cut(s)	58, 125, 168, 360
BsoBI	CYCGRG	1 cut(s)	170
Bsp1286I	GDGCHC	2 cut(s)	225, 254
Bsp143I	GATC	3 cut(s)	34, 61, 195
Bsp19I	CCATGG	1 cut(s)	235
BspANI	GGCC	4 cut(s)	58, 125, 168, 360
BspCNI	CTCAG	1 cut(s)	218
BspLI	GGNNCC	1 cut(s)	147
BspPI	GGATC	1 cut(s)	69
BspT107I	GGYRCC	1 cut(s)	145
BsrBI	CCGCTC	2 cut(s)	70, 404
BssECI	CCNNGG	3 cut(s)	11, 235, 468
BssMI	GATC	3 cut(s)	34, 61, 195
BssNI	GRCGYC	6 cut(s)	74, 114, 257, 372, 398, 461
BssT1I	CCWWGG	1 cut(s)	235
Bst4CI	ACNGT	1 cut(s)	414
BstACI	GRCGYC	6 cut(s)	74, 114, 257, 372, 398, 461
BstC8I	GCNNGC	3 cut(s)	177, 221, 225
BstDEI	CTNAG	2 cut(s)	205, 453
BstDSI	CCRYGG	1 cut(s)	235
BstF5I	GGATG	2 cut(s)	104, 156
BstHHI	GCGC	1 cut(s)	139
BstKTI	GATC	3 cut(s)	37, 64, 198
BstMBI	GATC	3 cut(s)	34, 61, 195
BstMWI	GCNNNNNNNGC	9 cut(s)	102, 111, 131, 145, 185, 249, 346, 366, 375
BstSCI	CCNGG	3 cut(s)	11, 159, 468
BstV1I	GCAGC	2 cut(s)	121, 126
BsuRI	GGCC	4 cut(s)	58, 125, 168, 360
BtgI	CCRYGG	1 cut(s)	235
BtrI	CACGTC	1 cut(s)	304
BtsCI	GGATG	2 cut(s)	104, 156
BtsI	GCAGTG	1 cut(s)	344
BtsIMutI	CAGTG	2 cut(s)	213, 344
Cac8I	GCNNGC	3 cut(s)	177, 221, 225
CfoI	GCGC	1 cut(s)	139
CseI	GACGC	1 cut(s)	103
CviAII	CATG	1 cut(s)	236
DdeI	CTNAG	2 cut(s)	205, 453
DpnI	GATC	3 cut(s)	36, 63, 197
DpnII	GATC	3 cut(s)	34, 61, 195
DraIII	CACNNNGTG	1 cut(s)	307
DrdI	GACNNNNNNGTC	1 cut(s)	463
DseDI	GACNNNNNNGTC	1 cut(s)	463
EaeI	YGGCCR	1 cut(s)	56
Ecl136II	GAGCTC	2 cut(s)	223, 252
Eco130I	CCWWGG	1 cut(s)	235
Eco24I	GRGCYC	2 cut(s)	225, 254
Eco53kI	GAGCTC	2 cut(s)	223, 252
Eco88I	CYCGRG	1 cut(s)	170
EcoICRI	GAGCTC	2 cut(s)	223, 252
EcoT14I	CCWWGG	1 cut(s)	235
EcoT38I	GRGCYC	2 cut(s)	225, 254
ErhI	CCWWGG	1 cut(s)	235
FaeI	CATG	1 cut(s)	239
FaiI	YATR	4 cut(s)	20, 49, 237, 319
FaqI	GGGAC	1 cut(s)	451
FatI	CATG	1 cut(s)	235
FauI	CCCGC	1 cut(s)	135
FbaI	TGATCA	1 cut(s)	195
FblI	GTMKAC	1 cut(s)	272
Fnu4HI	GCNGC	6 cut(s)	135, 140, 180, 217, 285, 338
FokI	GGATG	2 cut(s)	111, 143
FriOI	GRGCYC	2 cut(s)	225, 254
Fsp4HI	GCNGC	6 cut(s)	135, 140, 180, 217, 285, 338
GlaI	GCGC	1 cut(s)	138
GluI	GCNGC	6 cut(s)	135, 140, 180, 217, 285, 338
GsuI	CTGGAG	1 cut(s)	264
HaeIII	GGCC	4 cut(s)	58, 125, 168, 360
HapII	CCGG	9 cut(s)	13, 59, 111, 161, 228, 323, 361, 428, 470
HgaI	GACGC	1 cut(s)	103
HhaI	GCGC	1 cut(s)	139
Hin1I	GRCGYC	6 cut(s)	74, 114, 257, 372, 398, 461
Hin1II	CATG	1 cut(s)	239
Hin6I	GCGC	1 cut(s)	137
HinP1I	GCGC	1 cut(s)	137
HincII	GTYRAC	1 cut(s)	273
HindII	GTYRAC	1 cut(s)	273
HindIII	AAGCTT	1 cut(s)	437
HinfI	GANTC	1 cut(s)	277
HpaII	CCGG	9 cut(s)	13, 59, 111, 161, 228, 323, 361, 428, 470
HphI	GGTGA	1 cut(s)	205
Hpy166II	GTNNAC	2 cut(s)	273, 423
Hpy188I	TCNGA	4 cut(s)	34, 39, 200, 292
Hpy188III	TCNNGA	4 cut(s)	65, 118, 152, 407
Hpy8I	GTNNAC	2 cut(s)	273, 423
Hpy99I	CGWCG	8 cut(s)	259, 262, 274, 277, 308, 374, 463, 466
HpyAV	CCTTC	4 cut(s)	115, 178, 276, 351
HpyCH4III	ACNGT	1 cut(s)	414
HpyCH4IV	ACGT	6 cut(s)	74, 257, 303, 372, 398, 461
HpyF10VI	GCNNNNNNNGC	9 cut(s)	102, 111, 131, 145, 185, 249, 346, 366, 375
HpyF3I	CTNAG	2 cut(s)	205, 453
HpySE526I	ACGT	6 cut(s)	74, 257, 303, 372, 398, 461
Hsp92I	GRCGYC	6 cut(s)	74, 114, 257, 372, 398, 461
Hsp92II	CATG	1 cut(s)	239
HspAI	GCGC	1 cut(s)	137
Ksp22I	TGATCA	1 cut(s)	195
Kzo9I	GATC	3 cut(s)	34, 61, 195
LmnI	GCTCC	3 cut(s)	110, 303, 366
Lsp1109I	GCAGC	2 cut(s)	121, 126
MaeII	ACGT	6 cut(s)	74, 257, 303, 372, 398, 461
MalI	GATC	3 cut(s)	36, 63, 197
MbiI	CCGCTC	2 cut(s)	70, 404
MboI	GATC	3 cut(s)	34, 61, 195
MfeI	CAATTG	1 cut(s)	486
MhlI	GDGCHC	2 cut(s)	225, 254
MluCI	AATT	1 cut(s)	486
MlyI	GAGTC	1 cut(s)	271
MnlI	CCTC	5 cut(s)	118, 159, 179, 350, 357
MroXI	GAANNNNTTC	1 cut(s)	477
MspI	CCGG	9 cut(s)	13, 59, 111, 161, 228, 323, 361, 428, 470
MspR9I	CCNGG	3 cut(s)	13, 161, 470
MunI	CAATTG	1 cut(s)	486
MwoI	GCNNNNNNNGC	9 cut(s)	102, 111, 131, 145, 185, 249, 346, 366, 375
NciI	CCSGG	3 cut(s)	13, 161, 470
NcoI	CCATGG	1 cut(s)	235
NdeII	GATC	3 cut(s)	34, 61, 195
NlaIII	CATG	1 cut(s)	239
NlaIV	GGNNCC	1 cut(s)	147
PaeR7I	CTCGAG	1 cut(s)	170
PcsI	WCGNNNNNNNCGW	2 cut(s)	254, 266
PdmI	GAANNNNTTC	1 cut(s)	477
PflFI	GACNNNGTC	2 cut(s)	460, 463
PflMI	CCANNNNNTGG	1 cut(s)	307
PfoI	TCCNGGA	1 cut(s)	159
PkrI	GCNGC	6 cut(s)	136, 141, 181, 218, 286, 339
PleI	GAGTC	1 cut(s)	271
PpsI	GAGTC	1 cut(s)	271
Psp124BI	GAGCTC	2 cut(s)	225, 254
PspN4I	GGNNCC	1 cut(s)	147
PspXI	VCTCGAGB	1 cut(s)	170
PsyI	GACNNNGTC	2 cut(s)	460, 463
SacI	GAGCTC	2 cut(s)	225, 254
SalI	GTCGAC	1 cut(s)	271
SatI	GCNGC	6 cut(s)	135, 140, 180, 217, 285, 338
Sau3AI	GATC	3 cut(s)	34, 61, 195
SchI	GAGTC	1 cut(s)	271
ScrFI	CCNGG	3 cut(s)	13, 161, 470
SduI	GDGCHC	2 cut(s)	225, 254
Sfr274I	CTCGAG	1 cut(s)	170
SgrDI	CGTCGACG	1 cut(s)	271
SlaI	CTCGAG	1 cut(s)	170
SmlI	CTYRAG	1 cut(s)	170
SmoI	CTYRAG	1 cut(s)	170
Sse9I	AATT	1 cut(s)	486
SstI	GAGCTC	2 cut(s)	225, 254
StyD4I	CCNGG	3 cut(s)	11, 159, 468
StyI	CCWWGG	1 cut(s)	235
TaaI	ACNGT	1 cut(s)	414
TaiI	ACGT	6 cut(s)	77, 260, 306, 375, 401, 464
TaqI	TCGA	8 cut(s)	64, 171, 248, 254, 260, 272, 355, 408
TasI	AATT	1 cut(s)	486
TauI	GCSGC	4 cut(s)	182, 219, 287, 340
TscAI	CASTG	2 cut(s)	213, 351
TseI	GCWGC	2 cut(s)	134, 139
TspRI	CASTG	2 cut(s)	213, 351
Tth111I	GACNNNGTC	2 cut(s)	460, 463
Van91I	CCANNNNNTGG	1 cut(s)	307
XhoI	CTCGAG	1 cut(s)	170
XmiI	GTMKAC	1 cut(s)	272
XmnI	GAANNNNTTC	1 cut(s)	477
ZraI	GACGTC	5 cut(s)	75, 258, 373, 399, 462

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.