AT5G67420

lob domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0003322
Physical Location & Seq
Reverse (-)
26903866 .. 26906524
2659 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G67420.2

Sequence Viewer

Length: 753 bp
ATGAGCTGCAATGGTTGCCGTGTTCTCCGGAAAGGTTGCAGCGAGAATTGTATCCTCCGGCCATGTATTCAATGGATTGAAACCGCCGATGCTCAAGGCCACGCCACCGTCTTCGTCGCTAAATTCTTCGGCCGTGCTGGTCTCATGTCCTTTATCTCCGCTGTTCCGGATTCTCAACGTCCTGCTTTGTTTCAGTCGTTGCTCTACGAAGCTTGTGGAAGAACTGTCAATCCAGTTAACGGAGCAATCGGAATGTTATGGACTGGAAACTGGAATATCTGTCAAGCGGCTGTTGAAACAGTGCTTCGCGGCGGTTCTTTAAGACCGATCCCGGAGCTTCTCACTCACGGCGGCGGTTTCGCTGGCTTTCCTTCGCCTACATCTGAAGAAGCATCTGAGATCTGCACCGAAATGTTGAATCTCCAGCAAAATGATTCCACCGATCGTAACATCTATCATCATTCACGATTCTCAAGCTCTAGATCTAGATCTACTATGGATTCTTCTTCTCCGACGAAACGTAAGAGATTATCATCGGAAGACCAACCATCTTCGGAGCTTGATCTATCTCTCATCCCTAATTTTCCCATTAAGCAAGCAACACCTTCTTCTACACGGCGGCGATCAGTAACACCGTCGATGAACTCAGAGGACTCCGGGACGACGACGACTACGACGGCGTTTTGTGACAAGGGTGATGTGTACGGTAACGGAGGAGGAGAAACGACCAAGTTGCTTAACCTTTTTGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009965 GO:0010016 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0060776 GO:0099402 GO:1905392
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

250

Amino Acids

27.11

Weight (kDa)

7.55

Isoelectric Point (pI)

73.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 2 - 100 7.1e-25 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 309
AccIII TCCGGA 2 cut(s) 27, 166
AciI CCGC 8 cut(s) 84, 159, 287, 309, 312, 351, 354, 619
AclWI GGATC 1 cut(s) 322
AcoI YGGCCR 2 cut(s) 59, 130
AcsI RAATTY 1 cut(s) 122
AcuI CTGAAG 1 cut(s) 405
AfaI GTAC 1 cut(s) 704
AfiI CCNNNNNNNGG 1 cut(s) 239
AgsI TTSAA 4 cut(s) 71, 80, 296, 418
AloI GAACNNNNNNTCC 2 cut(s) 214, 246
AluBI AGCT 5 cut(s) 6, 212, 337, 477, 559
AluI AGCT 5 cut(s) 6, 212, 337, 477, 559
Alw26I GTCTC 1 cut(s) 146
AlwI GGATC 1 cut(s) 322
Aor13HI TCCGGA 2 cut(s) 27, 166
AoxI GGCC 3 cut(s) 59, 97, 130
ApeKI GCWGC 2 cut(s) 6, 39
ApoI RAATTY 1 cut(s) 122
AsuC2I CCSGG 2 cut(s) 332, 658
AsuHPI GGTGA 1 cut(s) 707
BbsI GAAGAC 2 cut(s) 103, 546
BbvI GCAGC 1 cut(s) 51
BccI CCATC 1 cut(s) 556
BceAI ACGGC 5 cut(s) 3, 117, 364, 632, 693
BcgI CGANNNNNNTGC 2 cut(s) 715, 749
BciVI GTATCC 1 cut(s) 62
BcnI CCSGG 2 cut(s) 332, 658
BcoDI GTCTC 1 cut(s) 146
BfaI CTAG 2 cut(s) 480, 486
BfuI GTATCC 1 cut(s) 62
BglII AGATCT 3 cut(s) 399, 482, 488
BisI GCNGC 6 cut(s) 7, 40, 288, 310, 352, 620
BlsI GCNGC 6 cut(s) 8, 41, 289, 311, 353, 621
Bme1390I CCNGG 2 cut(s) 332, 658
BmrFI CCNGG 2 cut(s) 332, 658
BmsI GCATC 2 cut(s) 79, 401
BpiI GAAGAC 2 cut(s) 103, 546
BpmI CTGGAG 1 cut(s) 407
BpuEI CTTGAG 2 cut(s) 78, 457
BpuMI CCSGG 2 cut(s) 332, 658
BsaBI GATNNNNATC 2 cut(s) 487, 532
BsaI GGTCTC 1 cut(s) 146
BsaWI WCCGGW 2 cut(s) 27, 166
Bsc4I CCNNNNNNNGG 1 cut(s) 239
Bse1I ACTGG 3 cut(s) 233, 268, 275
Bse3DI GCAATG 1 cut(s) 16
Bse8I GATNNNNATC 2 cut(s) 487, 532
BseAI TCCGGA 2 cut(s) 27, 166
BseGI GGATG 1 cut(s) 573
BseJI GATNNNNATC 2 cut(s) 487, 532
BseLI CCNNNNNNNGG 1 cut(s) 239
BseMI GCAATG 1 cut(s) 16
BseMII CTCAG 2 cut(s) 387, 660
BseNI ACTGG 3 cut(s) 233, 268, 275
BseRI GAGGAG 2 cut(s) 729, 732
BseX3I CGGCCG 1 cut(s) 130
BseXI GCAGC 1 cut(s) 51
BsgI GTGCAG 1 cut(s) 388
Bsh1236I CGCG 1 cut(s) 309
Bsh1285I CGRYCG 2 cut(s) 133, 445
BshFI GGCC 3 cut(s) 61, 99, 132
BsiEI CGRYCG 2 cut(s) 133, 445
BsiSI CCGG 5 cut(s) 28, 58, 167, 332, 657
BslFI GGGAC 1 cut(s) 673
BslI CCNNNNNNNGG 1 cut(s) 239
BsmAI GTCTC 1 cut(s) 146
BsmFI GGGAC 1 cut(s) 673
BsnI GGCC 3 cut(s) 61, 99, 132
Bso31I GGTCTC 1 cut(s) 146
Bsp13I TCCGGA 2 cut(s) 27, 166
Bsp143I GATC 7 cut(s) 327, 399, 442, 482, 488, 562, 623
BspACI CCGC 8 cut(s) 84, 159, 287, 309, 312, 351, 354, 619
BspANI GGCC 3 cut(s) 61, 99, 132
BspCNI CTCAG 2 cut(s) 388, 659
BspEI TCCGGA 2 cut(s) 27, 166
BspFNI CGCG 1 cut(s) 309
BspPI GGATC 1 cut(s) 322
BspTNI GGTCTC 1 cut(s) 146
BsrDI GCAATG 1 cut(s) 16
BsrI ACTGG 3 cut(s) 233, 268, 275
BssMI GATC 7 cut(s) 327, 399, 442, 482, 488, 562, 623
Bst4CI ACNGT 5 cut(s) 109, 226, 301, 636, 707
BstAPI GCANNNNNTGC 1 cut(s) 15
BstC8I GCNNGC 2 cut(s) 364, 597
BstDEI CTNAG 2 cut(s) 396, 646
BstF5I GGATG 1 cut(s) 573
BstFNI CGCG 1 cut(s) 309
BstKTI GATC 7 cut(s) 330, 402, 445, 485, 491, 565, 626
BstMAI GTCTC 1 cut(s) 146
BstMBI GATC 7 cut(s) 327, 399, 442, 482, 488, 562, 623
BstMCI CGRYCG 2 cut(s) 133, 445
BstMWI GCNNNNNNNGC 1 cut(s) 15
BstSCI CCNGG 2 cut(s) 330, 656
BstUI CGCG 1 cut(s) 309
BstV1I GCAGC 1 cut(s) 51
BstV2I GAAGAC 2 cut(s) 103, 546
BstX2I RGATCY 3 cut(s) 399, 482, 488
BstYI RGATCY 3 cut(s) 399, 482, 488
BstZI CGGCCG 1 cut(s) 130
BsuI GTATCC 1 cut(s) 62
BsuRI GGCC 3 cut(s) 61, 99, 132
BtsCI GGATG 1 cut(s) 573
BtsIMutI CAGTG 1 cut(s) 306
Cac8I GCNNGC 2 cut(s) 364, 597
Csp6I GTAC 1 cut(s) 703
CviAII CATG 2 cut(s) 63, 145
CviQI GTAC 1 cut(s) 703
DdeI CTNAG 2 cut(s) 396, 646
DpnI GATC 7 cut(s) 329, 401, 444, 484, 490, 564, 625
DpnII GATC 7 cut(s) 327, 399, 442, 482, 488, 562, 623
EaeI YGGCCR 2 cut(s) 59, 130
EagI CGGCCG 1 cut(s) 130
EclXI CGGCCG 1 cut(s) 130
Eco31I GGTCTC 1 cut(s) 146
Eco52I CGGCCG 1 cut(s) 130
Eco57I CTGAAG 1 cut(s) 405
FaeI CATG 2 cut(s) 66, 148
FaiI YATR 4 cut(s) 64, 146, 259, 497
FaqI GGGAC 1 cut(s) 673
FatI CATG 2 cut(s) 62, 144
Fnu4HI GCNGC 6 cut(s) 7, 40, 288, 310, 352, 620
FokI GGATG 1 cut(s) 560
Fsp4HI GCNGC 6 cut(s) 7, 40, 288, 310, 352, 620
FspBI CTAG 2 cut(s) 480, 486
GluI GCNGC 6 cut(s) 7, 40, 288, 310, 352, 620
GsuI CTGGAG 1 cut(s) 407
HaeIII GGCC 3 cut(s) 61, 99, 132
HapII CCGG 5 cut(s) 28, 58, 167, 332, 657
Hin1II CATG 2 cut(s) 66, 148
HincII GTYRAC 1 cut(s) 238
HindII GTYRAC 1 cut(s) 238
HindIII AAGCTT 1 cut(s) 210
HinfI GANTC 6 cut(s) 170, 418, 434, 468, 500, 653
HpaI GTTAAC 1 cut(s) 238
HpaII CCGG 5 cut(s) 28, 58, 167, 332, 657
HphI GGTGA 1 cut(s) 707
Hpy166II GTNNAC 2 cut(s) 238, 703
Hpy188I TCNGA 7 cut(s) 251, 385, 397, 513, 538, 556, 649
Hpy188III TCNNGA 5 cut(s) 28, 167, 465, 480, 486
Hpy8I GTNNAC 2 cut(s) 238, 703
Hpy99I CGWCG 6 cut(s) 119, 517, 640, 667, 670, 679
HpyAV CCTTC 2 cut(s) 381, 615
HpyCH4III ACNGT 5 cut(s) 109, 226, 301, 636, 707
HpyCH4IV ACGT 2 cut(s) 178, 520
HpyCH4V TGCA 3 cut(s) 9, 39, 405
HpyF10VI GCNNNNNNNGC 1 cut(s) 15
HpyF3I CTNAG 2 cut(s) 396, 646
HpySE526I ACGT 2 cut(s) 178, 520
Hsp92II CATG 2 cut(s) 66, 148
Kpn2I TCCGGA 2 cut(s) 27, 166
KspAI GTTAAC 1 cut(s) 238
Kzo9I GATC 7 cut(s) 327, 399, 442, 482, 488, 562, 623
LmnI GCTCC 3 cut(s) 242, 334, 556
Lsp1109I GCAGC 1 cut(s) 51
LweI GCATC 2 cut(s) 79, 401
MaeI CTAG 2 cut(s) 480, 486
MaeII ACGT 2 cut(s) 178, 520
MaeIII GTNAC 4 cut(s) 446, 628, 686, 707
MalI GATC 7 cut(s) 329, 401, 444, 484, 490, 564, 625
MboI GATC 7 cut(s) 327, 399, 442, 482, 488, 562, 623
MboII GAAGA 9 cut(s) 103, 118, 231, 398, 495, 498, 543, 551, 600
MflI RGATCY 3 cut(s) 399, 482, 488
MluCI AATT 3 cut(s) 46, 122, 580
MlyI GAGTC 1 cut(s) 647
MmeI TCCRAC 1 cut(s) 536
MnlI CCTC 4 cut(s) 65, 643, 707, 710
MroI TCCGGA 2 cut(s) 27, 166
MseI TTAA 5 cut(s) 237, 320, 591, 738, 751
MslI CAYNNNNRTG 1 cut(s) 410
MspA1I CMGCKG 1 cut(s) 161
MspI CCGG 5 cut(s) 28, 58, 167, 332, 657
MspR9I CCNGG 2 cut(s) 332, 658
MvnI CGCG 1 cut(s) 309
MwoI GCNNNNNNNGC 1 cut(s) 15
NciI CCSGG 2 cut(s) 332, 658
NdeII GATC 7 cut(s) 327, 399, 442, 482, 488, 562, 623
NlaIII CATG 2 cut(s) 66, 148
NmuCI GTSAC 1 cut(s) 686
PcsI WCGNNNNNNNCGW 1 cut(s) 671
PfeI GAWTC 5 cut(s) 170, 418, 434, 468, 500
PfoI TCCNGGA 2 cut(s) 330, 656
PkrI GCNGC 6 cut(s) 8, 41, 289, 311, 353, 621
Ple19I CGATCG 1 cut(s) 445
PleI GAGTC 1 cut(s) 647
PpsI GAGTC 1 cut(s) 647
PsuI RGATCY 3 cut(s) 399, 482, 488
PvuI CGATCG 1 cut(s) 445
RsaI GTAC 1 cut(s) 704
RsaNI GTAC 1 cut(s) 703
RseI CAYNNNNRTG 1 cut(s) 410
SaqAI TTAA 5 cut(s) 237, 320, 591, 738, 751
SatI GCNGC 6 cut(s) 7, 40, 288, 310, 352, 620
Sau3AI GATC 7 cut(s) 327, 399, 442, 482, 488, 562, 623
SchI GAGTC 1 cut(s) 647
ScrFI CCNGG 2 cut(s) 332, 658
SfaNI GCATC 2 cut(s) 79, 401
SmiMI CAYNNNNRTG 1 cut(s) 410
SmlI CTYRAG 2 cut(s) 93, 472
SmoI CTYRAG 2 cut(s) 93, 472
Sse9I AATT 3 cut(s) 46, 122, 580
SsiI CCGC 8 cut(s) 84, 159, 287, 309, 312, 351, 354, 619
SspMI CTAG 2 cut(s) 480, 486
StyD4I CCNGG 2 cut(s) 330, 656
TaaI ACNGT 5 cut(s) 109, 226, 301, 636, 707
TaiI ACGT 2 cut(s) 181, 523
TaqI TCGA 1 cut(s) 638
TaqII GACCGA 1 cut(s) 340
TasI AATT 3 cut(s) 46, 122, 580
TauI GCSGC 4 cut(s) 290, 312, 354, 622
TfiI GAWTC 5 cut(s) 170, 418, 434, 468, 500
Tru1I TTAA 5 cut(s) 237, 320, 591, 738, 751
Tru9I TTAA 5 cut(s) 237, 320, 591, 738, 751
TscAI CASTG 1 cut(s) 306
TseFI GTSAC 1 cut(s) 686
TseI GCWGC 2 cut(s) 6, 39
Tsp45I GTSAC 1 cut(s) 686
TspDTI ATGAA 1 cut(s) 656
TspGWI ACGGA 2 cut(s) 255, 726
TspRI CASTG 1 cut(s) 306
XapI RAATTY 1 cut(s) 122
XbaI TCTAGA 2 cut(s) 479, 485
XcmI CCANNNNNNNNNTGG 1 cut(s) 69
XspI CTAG 2 cut(s) 480, 486
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.