Rw0G004820

lob domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00185
OG0003322
Physical Location & Seq
Reverse (-)
26865 .. 27651
787 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G004820.1

Sequence Viewer

Length: 642 bp
ATGAGCTGCAATGGATGCCGAGTTTTGCGAAAGGGTTGCAGCGAGAATTGCATGCTACGTCAATGCATAGAGTGGATCGAAGACCCTCAAGCTCAAGCTCACGCCACCGTTTTCGTCGCCAAGTTCTTCGGCCGCGCCGGCCTCCTCTCCTTCATCAACGCTGTCTCCGAAAGCCAAAGACCAGCTTTGTTTCAGTCTTTGTTGTTTGAGGCGGTAGGGAGGACTATTAATCCGGTGAACGGAGCGACGGGGCTTCTTTTGGCTGGGAACTGGAAGGTCTGCCAGGCTGCGGTGGAGAAGGTGCTGAGCGGCGGCGCGTTGGAGCCACTTCCCGAGTACAGTTGTCGTGGCATTCATCACGTTCGACAACAACGGCGGGATGAGCGCTATTCCTCCAAGTACTCGACCAAAAAGAGGCCGGCTCTGTTGGCTTTCGACGATGACGACGATGATGAACGGCCTGATCTTGATCTTAGCTTGAAGGCATCGTCGAAGTTGCATAGAGATGATCACGATAGAGCGGCGACGCCGTCGTCTGTGGAAGGCTCAGAAACGACGATGTTGTCAAGAAGTGGTTCGTCGTCGGCAGATTGTACTACTAATGATTCAGAGGGAACAAGGCTTCTAAGACTATTCATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

213

Amino Acids

23.47

Weight (kDa)

6.52

Isoelectric Point (pI)

48.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 2 - 99 2.5e-23 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 532, 562
AccBSI CCGCTC 2 cut(s) 309, 521
AccII CGCG 2 cut(s) 135, 317
AciI CCGC 7 cut(s) 133, 212, 290, 309, 312, 376, 521
AclWI GGATC 1 cut(s) 83
AcoI YGGCCR 1 cut(s) 130
AcyI GRCGYC 1 cut(s) 527
AfaI GTAC 3 cut(s) 338, 401, 595
AfeI AGCGCT 1 cut(s) 386
AfiI CCNNNNNNNGG 3 cut(s) 239, 289, 414
AgsI TTSAA 1 cut(s) 481
AjnI CCWGG 1 cut(s) 282
AluBI AGCT 5 cut(s) 6, 92, 98, 185, 477
AluI AGCT 5 cut(s) 6, 92, 98, 185, 477
Alw26I GTCTC 1 cut(s) 169
AlwI GGATC 1 cut(s) 83
Ama87I CYCGRG 1 cut(s) 332
Aor51HI AGCGCT 1 cut(s) 386
AoxI GGCC 4 cut(s) 130, 139, 416, 458
ApeKI GCWGC 3 cut(s) 6, 39, 287
ArsI GACNNNNNNTTYG 1 cut(s) 621
AseI ATTAAT 1 cut(s) 228
Asp700I GAANNNNTTC 1 cut(s) 574
AspLEI GCGC 3 cut(s) 137, 317, 387
AsuHPI GGTGA 1 cut(s) 247
AvaI CYCGRG 1 cut(s) 332
BbsI GAAGAC 1 cut(s) 87
BbvI GCAGC 2 cut(s) 51, 274
BceAI ACGGC 3 cut(s) 389, 473, 514
BcgI CGANNNNNNTGC 2 cut(s) 18, 52
BciT130I CCWGG 1 cut(s) 284
BclI TGATCA 1 cut(s) 508
BcoDI GTCTC 1 cut(s) 169
BfoI RGCGCY 1 cut(s) 388
BglI GCCNNNNNGGC 1 cut(s) 138
BisI GCNGC 7 cut(s) 7, 40, 133, 288, 310, 313, 522
BlpI GCTNAGC 1 cut(s) 305
BlsI GCNGC 7 cut(s) 8, 41, 134, 289, 311, 314, 523
BmcAI AGTACT 1 cut(s) 401
Bme1390I CCNGG 1 cut(s) 284
BmeT110I CYCGRG 1 cut(s) 332
BmiI GGNNCC 1 cut(s) 324
BmrFI CCNGG 1 cut(s) 284
BmsI GCATC 2 cut(s) 5, 494
BpiI GAAGAC 1 cut(s) 87
BplI GAGNNNNNCTC 2 cut(s) 406, 438
Bpu1102I GCTNAGC 1 cut(s) 305
BpuEI CTTGAG 2 cut(s) 72, 78
BsaBI GATNNNNATC 1 cut(s) 468
BsaHI GRCGYC 1 cut(s) 527
BsaWI WCCGGW 1 cut(s) 232
BsaXI ACNNNNNCTCC 2 cut(s) 149, 179
Bsc4I CCNNNNNNNGG 3 cut(s) 239, 289, 414
Bse118I RCCGGY 2 cut(s) 137, 418
Bse1I ACTGG 1 cut(s) 275
Bse3DI GCAATG 1 cut(s) 16
Bse8I GATNNNNATC 1 cut(s) 468
BseBI CCWGG 1 cut(s) 284
BseGI GGATG 2 cut(s) 20, 385
BseJI GATNNNNATC 1 cut(s) 468
BseLI CCNNNNNNNGG 3 cut(s) 239, 289, 414
BseMI GCAATG 1 cut(s) 16
BseMII CTCAG 2 cut(s) 296, 561
BseNI ACTGG 1 cut(s) 275
BseRI GAGGAG 1 cut(s) 134
BseX3I CGGCCG 1 cut(s) 130
BseXI GCAGC 2 cut(s) 51, 274
BseYI CCCAGC 1 cut(s) 263
Bsh1236I CGCG 2 cut(s) 135, 317
Bsh1285I CGRYCG 1 cut(s) 133
BshFI GGCC 4 cut(s) 132, 141, 418, 460
BsiEI CGRYCG 1 cut(s) 133
BsiHKCI CYCGRG 1 cut(s) 332
BsiSI CCGG 3 cut(s) 138, 233, 419
BslI CCNNNNNNNGG 3 cut(s) 239, 289, 414
BsmAI GTCTC 1 cut(s) 169
BsmI GAATGC 1 cut(s) 351
BsnI GGCC 4 cut(s) 132, 141, 418, 460
BsoBI CYCGRG 1 cut(s) 332
Bsp143I GATC 4 cut(s) 75, 463, 469, 508
Bsp1720I GCTNAGC 1 cut(s) 305
BspACI CCGC 7 cut(s) 133, 212, 290, 309, 312, 376, 521
BspANI GGCC 4 cut(s) 132, 141, 418, 460
BspCNI CTCAG 2 cut(s) 297, 560
BspFNI CGCG 2 cut(s) 135, 317
BspLI GGNNCC 1 cut(s) 324
BspPI GGATC 1 cut(s) 83
BsrBI CCGCTC 2 cut(s) 309, 521
BsrDI GCAATG 1 cut(s) 16
BsrFI RCCGGY 2 cut(s) 137, 418
BsrI ACTGG 1 cut(s) 275
BssAI RCCGGY 2 cut(s) 137, 418
BssMI GATC 4 cut(s) 75, 463, 469, 508
BssNI GRCGYC 1 cut(s) 527
Bst2UI CCWGG 1 cut(s) 284
Bst4CI ACNGT 2 cut(s) 109, 341
BstACI GRCGYC 1 cut(s) 527
BstAPI GCANNNNNTGC 1 cut(s) 15
BstC8I GCNNGC 3 cut(s) 53, 139, 420
BstDEI CTNAG 4 cut(s) 305, 473, 547, 626
BstF5I GGATG 2 cut(s) 20, 385
BstFNI CGCG 2 cut(s) 135, 317
BstH2I RGCGCY 1 cut(s) 388
BstHHI GCGC 3 cut(s) 137, 317, 387
BstKTI GATC 4 cut(s) 78, 466, 472, 511
BstMAI GTCTC 1 cut(s) 169
BstMBI GATC 4 cut(s) 75, 463, 469, 508
BstMCI CGRYCG 1 cut(s) 133
BstMWI GCNNNNNNNGC 5 cut(s) 15, 48, 138, 382, 428
BstNI CCWGG 1 cut(s) 284
BstNSI RCATGY 1 cut(s) 55
BstSCI CCNGG 1 cut(s) 282
BstUI CGCG 2 cut(s) 135, 317
BstV1I GCAGC 2 cut(s) 51, 274
BstV2I GAAGAC 1 cut(s) 87
BstZI CGGCCG 1 cut(s) 130
BsuRI GGCC 4 cut(s) 132, 141, 418, 460
BtsCI GGATG 2 cut(s) 20, 385
Cac8I GCNNGC 3 cut(s) 53, 139, 420
CfoI GCGC 3 cut(s) 137, 317, 387
Cfr10I RCCGGY 2 cut(s) 137, 418
CseI GACGC 1 cut(s) 535
Csp6I GTAC 3 cut(s) 337, 400, 594
CviAII CATG 1 cut(s) 52
CviQI GTAC 3 cut(s) 337, 400, 594
DdeI CTNAG 4 cut(s) 305, 473, 547, 626
DpnI GATC 4 cut(s) 77, 465, 471, 510
DpnII GATC 4 cut(s) 75, 463, 469, 508
DrdI GACNNNNNNGTC 2 cut(s) 532, 562
DseDI GACNNNNNNGTC 2 cut(s) 532, 562
EaeI YGGCCR 1 cut(s) 130
EagI CGGCCG 1 cut(s) 130
EclXI CGGCCG 1 cut(s) 130
Eco47III AGCGCT 1 cut(s) 386
Eco52I CGGCCG 1 cut(s) 130
Eco88I CYCGRG 1 cut(s) 332
EcoRII CCWGG 1 cut(s) 282
EcoT22I ATGCAT 1 cut(s) 68
FaeI CATG 1 cut(s) 55
FaiI YATR 3 cut(s) 53, 68, 501
FalI AAGNNNNNCTT 2 cut(s) 169, 201
FatI CATG 1 cut(s) 51
FauI CCCGC 1 cut(s) 369
FbaI TGATCA 1 cut(s) 508
Fnu4HI GCNGC 7 cut(s) 7, 40, 133, 288, 310, 313, 522
FokI GGATG 2 cut(s) 27, 392
Fsp4HI GCNGC 7 cut(s) 7, 40, 133, 288, 310, 313, 522
GlaI GCGC 3 cut(s) 136, 316, 386
GluI GCNGC 7 cut(s) 7, 40, 133, 288, 310, 313, 522
GsaI CCCAGC 1 cut(s) 267
HaeII RGCGCY 1 cut(s) 388
HaeIII GGCC 4 cut(s) 132, 141, 418, 460
HapII CCGG 3 cut(s) 138, 233, 419
HgaI GACGC 1 cut(s) 535
HhaI GCGC 3 cut(s) 137, 317, 387
Hin1I GRCGYC 1 cut(s) 527
Hin1II CATG 1 cut(s) 55
Hin6I GCGC 3 cut(s) 135, 315, 385
HinP1I GCGC 3 cut(s) 135, 315, 385
HinfI GANTC 1 cut(s) 605
HpaII CCGG 3 cut(s) 138, 233, 419
HphI GGTGA 1 cut(s) 247
Hpy166II GTNNAC 1 cut(s) 238
Hpy188I TCNGA 3 cut(s) 169, 550, 610
Hpy188III TCNNGA 4 cut(s) 332, 467, 512, 567
Hpy8I GTNNAC 1 cut(s) 238
HpyAV CCTTC 5 cut(s) 160, 268, 292, 475, 536
HpyCH4III ACNGT 2 cut(s) 109, 341
HpyCH4IV ACGT 2 cut(s) 58, 360
HpyCH4V TGCA 5 cut(s) 9, 39, 51, 66, 499
HpyF10VI GCNNNNNNNGC 5 cut(s) 15, 48, 138, 382, 428
HpyF3I CTNAG 4 cut(s) 305, 473, 547, 626
HpySE526I ACGT 2 cut(s) 58, 360
Hsp92I GRCGYC 1 cut(s) 527
Hsp92II CATG 1 cut(s) 55
HspAI GCGC 3 cut(s) 135, 315, 385
KroI GCCGGC 2 cut(s) 137, 418
KroNI GCCGGC 2 cut(s) 139, 420
Ksp22I TGATCA 1 cut(s) 508
Kzo9I GATC 4 cut(s) 75, 463, 469, 508
LmnI GCTCC 2 cut(s) 242, 322
LpnPI CCDG 9 cut(s) 151, 195, 246, 249, 256, 269, 296, 432, 474
Lsp1109I GCAGC 2 cut(s) 51, 274
LweI GCATC 2 cut(s) 5, 494
MaeII ACGT 2 cut(s) 58, 360
MalI GATC 4 cut(s) 77, 465, 471, 510
MbiI CCGCTC 2 cut(s) 309, 521
MboI GATC 4 cut(s) 75, 463, 469, 508
MboII GAAGA 2 cut(s) 92, 118
MluCI AATT 1 cut(s) 46
MmeI TCCRAC 1 cut(s) 300
MnlI CCTC 8 cut(s) 96, 152, 155, 202, 213, 403, 408, 604
Mph1103I ATGCAT 1 cut(s) 68
MroNI GCCGGC 2 cut(s) 137, 418
MroXI GAANNNNTTC 1 cut(s) 574
MseI TTAA 1 cut(s) 228
MslI CAYNNNNRTG 1 cut(s) 504
MspI CCGG 3 cut(s) 138, 233, 419
MspR9I CCNGG 1 cut(s) 284
Mva1269I GAATGC 1 cut(s) 351
MvaI CCWGG 1 cut(s) 284
MvnI CGCG 2 cut(s) 135, 317
MwoI GCNNNNNNNGC 5 cut(s) 15, 48, 138, 382, 428
NaeI GCCGGC 2 cut(s) 139, 420
NdeII GATC 4 cut(s) 75, 463, 469, 508
NgoMIV GCCGGC 2 cut(s) 137, 418
NlaIII CATG 1 cut(s) 55
NlaIV GGNNCC 1 cut(s) 324
NmeAIII GCCGAG 1 cut(s) 44
NsiI ATGCAT 1 cut(s) 68
NspI RCATGY 1 cut(s) 55
PaeI GCATGC 1 cut(s) 55
PcsI WCGNNNNNNNCGW 3 cut(s) 165, 441, 444
PctI GAATGC 1 cut(s) 351
PdiI GCCGGC 2 cut(s) 139, 420
PdmI GAANNNNTTC 1 cut(s) 574
PfeI GAWTC 1 cut(s) 605
PflFI GACNNNGTC 1 cut(s) 529
PkrI GCNGC 7 cut(s) 8, 41, 134, 289, 311, 314, 523
PshBI ATTAAT 1 cut(s) 228
Psp6I CCWGG 1 cut(s) 282
PspFI CCCAGC 1 cut(s) 263
PspGI CCWGG 1 cut(s) 282
PspN4I GGNNCC 1 cut(s) 324
PsyI GACNNNGTC 1 cut(s) 529
RsaI GTAC 3 cut(s) 338, 401, 595
RsaNI GTAC 3 cut(s) 337, 400, 594
RseI CAYNNNNRTG 1 cut(s) 504
SaqAI TTAA 1 cut(s) 228
SatI GCNGC 7 cut(s) 7, 40, 133, 288, 310, 313, 522
Sau3AI GATC 4 cut(s) 75, 463, 469, 508
ScaI AGTACT 1 cut(s) 401
ScrFI CCNGG 1 cut(s) 284
SetI ASST 9 cut(s) 8, 61, 94, 100, 187, 279, 303, 363, 479
SfaNI GCATC 2 cut(s) 5, 494
SfiI GGCCNNNNNGGCC 1 cut(s) 138
SmiMI CAYNNNNRTG 1 cut(s) 504
SmlI CTYRAG 2 cut(s) 87, 93
SmoI CTYRAG 2 cut(s) 87, 93
SphI GCATGC 1 cut(s) 55
Sse9I AATT 1 cut(s) 46
SsiI CCGC 7 cut(s) 133, 212, 290, 309, 312, 376, 521
StyD4I CCNGG 1 cut(s) 282
TaaI ACNGT 2 cut(s) 109, 341
TaiI ACGT 2 cut(s) 61, 363
TaqI TCGA 5 cut(s) 78, 364, 404, 435, 491
TasI AATT 1 cut(s) 46
TatI WGTACW 3 cut(s) 336, 399, 593
TauI GCSGC 4 cut(s) 135, 312, 315, 524
TfiI GAWTC 1 cut(s) 605
Tru1I TTAA 1 cut(s) 228
Tru9I TTAA 1 cut(s) 228
TseI GCWGC 3 cut(s) 6, 39, 287
TspDTI ATGAA 4 cut(s) 142, 344, 468, 625
TspGWI ACGGA 1 cut(s) 255
Tth111I GACNNNGTC 1 cut(s) 529
VspI ATTAAT 1 cut(s) 228
XceI RCATGY 1 cut(s) 55
XmnI GAANNNNTTC 1 cut(s) 574
ZrmI AGTACT 1 cut(s) 401
Zsp2I ATGCAT 1 cut(s) 68
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.