Prupe.1G424400_v2.0.a1

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0003322
Physical Location & Seq
Forward (+)
36583627 .. 36585209
1583 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G424400.1

Sequence Viewer

Length: 672 bp
ATGAGCTGCAACGGATGCCGCGTTCTCCGAAAGGGGTGCAGCGAGACGTGCATACTGAGGTCGTGCCTGCAGGCGATCGACTCCCCCGAAGCCCAAGGCAACGCCACTCTCTTCCTCGCCAAGTTCTTTGGCCGCAGCGACCTCCTTTCCTTCATCTCCGCCGTCCCCGAACCTCAGCGCCCCGCTCTCTTTCAGTCTCTGCTGTTCGAAGCGTGCGGTCGTACGGTCAACCCGGTCAACGGAGCCGTGGGGCTTCTATCGAGCGGGAACTGGCACGTTTGCCAATCCGCGGTCGAGACGGTCTTGTCCGGCGGCGTTTTAAGGCCGTTGACGGCGGTTTTGACGCCGAGCCTCCACAAATCTTCCGAGACGTCCAGTAGAGGCGCATGCACGCTGCAAAACCTCTACTATCCATCCGTACCGTCCGCGTACTACGAGGCGGAGCGAGTCCAACCGTTCGATGCGGGGCTCTCTCTGAAGCCGAATCTCACGGCGGGAGAACGAGGAAGAGGCAGAGGAATGAGAAGCAGCAGCTGTGTGAGTACTGCAGTGGAGAAGCGGCGAAGGGATACGGTGTCGTTTAGTTCGGAAGAGTCGGTGATGACGTCGACGACGAGCTTTGAACGCGGCGGGGGTCTCAAGGATCGCAAGGTTTTGAACCTCTTTGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

224

Amino Acids

23.97

Weight (kDa)

9.07

Isoelectric Point (pI)

67.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 304
AatII GACGTC 2 cut(s) 374, 608
AccBSI CCGCTC 2 cut(s) 185, 264
AccI GTMKAC 1 cut(s) 608
AccII CGCG 4 cut(s) 21, 290, 428, 627
AclWI GGATC 1 cut(s) 651
AcoI YGGCCR 1 cut(s) 130
AcuI CTGAAG 1 cut(s) 497
AcyI GRCGYC 3 cut(s) 344, 371, 605
AfaI GTAC 4 cut(s) 223, 420, 431, 544
AfiI CCNNNNNNNGG 2 cut(s) 239, 289
AgsI TTSAA 2 cut(s) 623, 658
AjiI CACGTC 1 cut(s) 48
AloI GAACNNNNNNTCC 1 cut(s) 38
AluBI AGCT 3 cut(s) 6, 534, 618
AluI AGCT 3 cut(s) 6, 534, 618
Alw26I GTCTC 5 cut(s) 38, 201, 290, 362, 641
AlwI GGATC 1 cut(s) 651
AlwNI CAGNNNCTG 2 cut(s) 199, 534
AoxI GGCC 2 cut(s) 130, 323
ApeKI GCWGC 6 cut(s) 6, 39, 135, 394, 528, 531
ArsI GACNNNNNNTTYG 2 cut(s) 322, 354
AspLEI GCGC 2 cut(s) 180, 386
AsuC2I CCSGG 1 cut(s) 233
AsuHPI GGTGA 1 cut(s) 610
AsuII TTCGAA 1 cut(s) 207
BanII GRGCYC 1 cut(s) 471
BbvCI CCTCAGC 1 cut(s) 174
BbvI GCAGC 5 cut(s) 51, 147, 381, 540, 543
BccI CCATC 1 cut(s) 421
BceAI ACGGC 5 cut(s) 146, 230, 310, 348, 507
BcgI CGANNNNNNTGC 2 cut(s) 18, 52
BciVI GTATCC 1 cut(s) 562
BcnI CCSGG 1 cut(s) 233
BcoDI GTCTC 5 cut(s) 38, 201, 290, 362, 641
BfmI CTRYAG 2 cut(s) 68, 546
BfoI RGCGCY 1 cut(s) 181
BfuI GTATCC 1 cut(s) 562
BmcAI AGTACT 1 cut(s) 544
Bme1390I CCNGG 1 cut(s) 233
BmgBI CACGTC 1 cut(s) 48
BmiI GGNNCC 1 cut(s) 244
BmrFI CCNGG 1 cut(s) 233
BmsI GCATC 2 cut(s) 5, 451
Bpu10I CCTNAGC 1 cut(s) 174
Bpu14I TTCGAA 1 cut(s) 207
BpuEI CTTGAG 1 cut(s) 623
BpuMI CCSGG 1 cut(s) 233
BsaHI GRCGYC 3 cut(s) 344, 371, 605
BsaI GGTCTC 1 cut(s) 641
BsaJI CCNNGG 3 cut(s) 94, 246, 288
Bsc4I CCNNNNNNNGG 2 cut(s) 239, 289
Bse1I ACTGG 2 cut(s) 275, 375
BseDI CCNNGG 3 cut(s) 94, 246, 288
BseGI GGATG 2 cut(s) 20, 413
BseLI CCNNNNNNNGG 2 cut(s) 239, 289
BseMII CTCAG 2 cut(s) 47, 188
BseNI ACTGG 2 cut(s) 275, 375
BseXI GCAGC 5 cut(s) 51, 147, 381, 540, 543
BsgI GTGCAG 1 cut(s) 58
Bsh1236I CGCG 4 cut(s) 21, 290, 428, 627
Bsh1285I CGRYCG 3 cut(s) 78, 220, 294
BshFI GGCC 2 cut(s) 132, 325
BsiEI CGRYCG 3 cut(s) 78, 220, 294
BsiSI CCGG 2 cut(s) 233, 309
BsiWI CGTACG 1 cut(s) 221
BslFI GGGAC 1 cut(s) 149
BslI CCNNNNNNNGG 2 cut(s) 239, 289
BsmAI GTCTC 5 cut(s) 38, 201, 290, 362, 641
BsmBI CGTCTC 3 cut(s) 38, 290, 362
BsmFI GGGAC 1 cut(s) 149
BsnI GGCC 2 cut(s) 132, 325
Bso31I GGTCTC 1 cut(s) 641
Bsp119I TTCGAA 1 cut(s) 207
Bsp1286I GDGCHC 1 cut(s) 471
Bsp143I GATC 2 cut(s) 75, 643
BspANI GGCC 2 cut(s) 132, 325
BspCNI CTCAG 2 cut(s) 48, 187
BspFNI CGCG 4 cut(s) 21, 290, 428, 627
BspLI GGNNCC 1 cut(s) 244
BspMAI CTGCAG 2 cut(s) 72, 550
BspPI GGATC 1 cut(s) 651
BspT104I TTCGAA 1 cut(s) 207
BspTNI GGTCTC 1 cut(s) 641
BsrBI CCGCTC 2 cut(s) 185, 264
BsrI ACTGG 2 cut(s) 275, 375
BssECI CCNNGG 3 cut(s) 94, 246, 288
BssMI GATC 2 cut(s) 75, 643
BssNI GRCGYC 3 cut(s) 344, 371, 605
BssT1I CCWWGG 1 cut(s) 94
Bst4CI ACNGT 5 cut(s) 226, 301, 423, 456, 574
Bst6I CTCTTC 3 cut(s) 116, 502, 585
BstACI GRCGYC 3 cut(s) 344, 371, 605
BstAPI GCANNNNNTGC 1 cut(s) 15
BstBI TTCGAA 1 cut(s) 207
BstC8I GCNNGC 5 cut(s) 68, 72, 214, 388, 392
BstDEI CTNAG 2 cut(s) 56, 174
BstDSI CCRYGG 2 cut(s) 246, 288
BstF5I GGATG 2 cut(s) 20, 413
BstFNI CGCG 4 cut(s) 21, 290, 428, 627
BstH2I RGCGCY 1 cut(s) 181
BstHHI GCGC 2 cut(s) 180, 386
BstKTI GATC 2 cut(s) 78, 646
BstMAI GTCTC 5 cut(s) 38, 201, 290, 362, 641
BstMBI GATC 2 cut(s) 75, 643
BstMCI CGRYCG 3 cut(s) 78, 220, 294
BstMWI GCNNNNNNNGC 3 cut(s) 15, 48, 624
BstNSI RCATGY 1 cut(s) 390
BstSCI CCNGG 1 cut(s) 231
BstSFI CTRYAG 2 cut(s) 68, 546
BstUI CGCG 4 cut(s) 21, 290, 428, 627
BstV1I GCAGC 5 cut(s) 51, 147, 381, 540, 543
BsuI GTATCC 1 cut(s) 562
BsuRI GGCC 2 cut(s) 132, 325
BtgI CCRYGG 2 cut(s) 246, 288
BtrI CACGTC 1 cut(s) 48
BtsCI GGATG 2 cut(s) 20, 413
BtsI GCAGTG 1 cut(s) 555
BtsIMutI CAGTG 1 cut(s) 555
Cac8I GCNNGC 5 cut(s) 68, 72, 214, 388, 392
CaiI CAGNNNCTG 2 cut(s) 199, 534
CfoI GCGC 2 cut(s) 180, 386
Cfr42I CCGCGG 1 cut(s) 291
CseI GACGC 1 cut(s) 352
Csp6I GTAC 4 cut(s) 222, 419, 430, 543
CviAII CATG 1 cut(s) 387
CviQI GTAC 4 cut(s) 222, 419, 430, 543
DdeI CTNAG 2 cut(s) 56, 174
DpnI GATC 2 cut(s) 77, 645
DpnII GATC 2 cut(s) 75, 643
DrdI GACNNNNNNGTC 1 cut(s) 304
DseDI GACNNNNNNGTC 1 cut(s) 304
EaeI YGGCCR 1 cut(s) 130
Eam1104I CTCTTC 3 cut(s) 116, 502, 585
EarI CTCTTC 3 cut(s) 116, 502, 585
EciI GGCGGA 2 cut(s) 148, 455
Eco130I CCWWGG 1 cut(s) 94
Eco24I GRGCYC 1 cut(s) 471
Eco31I GGTCTC 1 cut(s) 641
Eco57I CTGAAG 1 cut(s) 497
EcoT14I CCWWGG 1 cut(s) 94
EcoT38I GRGCYC 1 cut(s) 471
ErhI CCWWGG 1 cut(s) 94
Esp3I CGTCTC 3 cut(s) 38, 290, 362
FaeI CATG 1 cut(s) 390
FaiI YATR 2 cut(s) 53, 388
FaqI GGGAC 1 cut(s) 149
FatI CATG 1 cut(s) 386
FauI CCCGC 5 cut(s) 190, 257, 457, 487, 623
FblI GTMKAC 1 cut(s) 608
FokI GGATG 2 cut(s) 27, 400
FriOI GRGCYC 1 cut(s) 471
GlaI GCGC 2 cut(s) 179, 385
HaeII RGCGCY 1 cut(s) 181
HaeIII GGCC 2 cut(s) 132, 325
HapII CCGG 2 cut(s) 233, 309
HgaI GACGC 1 cut(s) 352
HhaI GCGC 2 cut(s) 180, 386
Hin1I GRCGYC 3 cut(s) 344, 371, 605
Hin1II CATG 1 cut(s) 390
Hin6I GCGC 2 cut(s) 178, 384
HinP1I GCGC 2 cut(s) 178, 384
HincII GTYRAC 4 cut(s) 229, 238, 330, 609
HindII GTYRAC 4 cut(s) 229, 238, 330, 609
HinfI GANTC 4 cut(s) 80, 447, 484, 593
HpaII CCGG 2 cut(s) 233, 309
HphI GGTGA 1 cut(s) 610
Hpy166II GTNNAC 4 cut(s) 229, 238, 330, 609
Hpy188I TCNGA 5 cut(s) 29, 367, 477, 589, 671
Hpy188III TCNNGA 1 cut(s) 295
Hpy8I GTNNAC 4 cut(s) 229, 238, 330, 609
Hpy99I CGWCG 3 cut(s) 610, 613, 616
HpyAV CCTTC 2 cut(s) 160, 558
HpyCH4III ACNGT 5 cut(s) 226, 301, 423, 456, 574
HpyCH4IV ACGT 4 cut(s) 47, 276, 371, 605
HpyCH4V TGCA 7 cut(s) 9, 39, 51, 70, 390, 397, 548
HpyF10VI GCNNNNNNNGC 3 cut(s) 15, 48, 624
HpyF3I CTNAG 2 cut(s) 56, 174
HpySE526I ACGT 4 cut(s) 47, 276, 371, 605
Hsp92I GRCGYC 3 cut(s) 344, 371, 605
Hsp92II CATG 1 cut(s) 390
HspAI GCGC 2 cut(s) 178, 384
KspI CCGCGG 1 cut(s) 291
Kzo9I GATC 2 cut(s) 75, 643
LmnI GCTCC 2 cut(s) 242, 442
LpnPI CCDG 6 cut(s) 56, 80, 246, 256, 322, 388
Lsp1109I GCAGC 5 cut(s) 51, 147, 381, 540, 543
LweI GCATC 2 cut(s) 5, 451
MaeII ACGT 4 cut(s) 47, 276, 371, 605
MalI GATC 2 cut(s) 77, 645
MbiI CCGCTC 2 cut(s) 185, 264
MboI GATC 2 cut(s) 75, 643
MboII GAAGA 4 cut(s) 103, 354, 519, 602
MhlI GDGCHC 1 cut(s) 471
MlyI GAGTC 3 cut(s) 74, 456, 602
MmeI TCCRAC 1 cut(s) 475
MseI TTAA 1 cut(s) 320
MspA1I CMGCKG 2 cut(s) 290, 534
MspI CCGG 2 cut(s) 233, 309
MspR9I CCNGG 1 cut(s) 233
MvnI CGCG 4 cut(s) 21, 290, 428, 627
MwoI GCNNNNNNNGC 3 cut(s) 15, 48, 624
NciI CCSGG 1 cut(s) 233
NdeII GATC 2 cut(s) 75, 643
NlaIII CATG 1 cut(s) 390
NlaIV GGNNCC 1 cut(s) 244
NmeAIII GCCGAG 1 cut(s) 372
NspI RCATGY 1 cut(s) 390
NspV TTCGAA 1 cut(s) 207
PaeI GCATGC 1 cut(s) 390
PcsI WCGNNNNNNNCGW 4 cut(s) 18, 84, 602, 611
PfeI GAWTC 1 cut(s) 484
Pfl23II CGTACG 1 cut(s) 221
Ple19I CGATCG 1 cut(s) 78
PleI GAGTC 3 cut(s) 74, 455, 601
PpsI GAGTC 3 cut(s) 74, 455, 601
PspLI CGTACG 1 cut(s) 221
PspN4I GGNNCC 1 cut(s) 244
PstI CTGCAG 2 cut(s) 72, 550
PstNI CAGNNNCTG 2 cut(s) 199, 534
PvuI CGATCG 1 cut(s) 78
PvuII CAGCTG 1 cut(s) 534
RsaI GTAC 4 cut(s) 223, 420, 431, 544
RsaNI GTAC 4 cut(s) 222, 419, 430, 543
SacII CCGCGG 1 cut(s) 291
SalI GTCGAC 1 cut(s) 607
SaqAI TTAA 1 cut(s) 320
Sau3AI GATC 2 cut(s) 75, 643
SbfI CCTGCAGG 1 cut(s) 72
ScaI AGTACT 1 cut(s) 544
SchI GAGTC 3 cut(s) 74, 456, 602
ScrFI CCNGG 1 cut(s) 233
SdaI CCTGCAGG 1 cut(s) 72
SduI GDGCHC 1 cut(s) 471
SfaNI GCATC 2 cut(s) 5, 451
SfcI CTRYAG 2 cut(s) 68, 546
Sfr303I CCGCGG 1 cut(s) 291
SfuI TTCGAA 1 cut(s) 207
SgrBI CCGCGG 1 cut(s) 291
SgrDI CGTCGACG 1 cut(s) 607
SmlI CTYRAG 1 cut(s) 638
SmoI CTYRAG 1 cut(s) 638
SphI GCATGC 1 cut(s) 390
Sse8387I CCTGCAGG 1 cut(s) 72
StyD4I CCNGG 1 cut(s) 231
StyI CCWWGG 1 cut(s) 94
TaaI ACNGT 5 cut(s) 226, 301, 423, 456, 574
TaiI ACGT 4 cut(s) 50, 279, 374, 608
TaqI TCGA 6 cut(s) 78, 207, 260, 294, 459, 608
TatI WGTACW 1 cut(s) 542
TauI GCSGC 5 cut(s) 21, 135, 315, 562, 630
TfiI GAWTC 1 cut(s) 484
Tru1I TTAA 1 cut(s) 320
Tru9I TTAA 1 cut(s) 320
TscAI CASTG 1 cut(s) 555
TseI GCWGC 6 cut(s) 6, 39, 135, 394, 528, 531
TspDTI ATGAA 1 cut(s) 142
TspGWI ACGGA 3 cut(s) 27, 255, 406
TspRI CASTG 1 cut(s) 555
XceI RCATGY 1 cut(s) 390
XmiI GTMKAC 1 cut(s) 608
ZraI GACGTC 2 cut(s) 372, 606
ZrmI AGTACT 1 cut(s) 544
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.