Rh6DG047200

lob domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0003322
Physical Location & Seq
Reverse (-)
5005139 .. 5006360
1222 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG047200.1

Sequence Viewer

Length: 639 bp
ATGAGCTGCAATGGATGCCGAGTTTTGCGAAAGGGTTGCAGCGAGAATTGCATGCTACGTCAATGCATAGAGTGGATGGAAGACCCTCAAGCTCAAGCTCACGCCACCGTTTTCGTCGCCAAGTTCTTCGGCCGCGCCGGCCTCCTCTCCTTCATCAACGCCGTCTCCGAAAGCCAAAGACCAGCTTTGTTTCAGTCTTTGTTGTTTGAGGCGGTGGGGAGGACTATAAATCCGGTGAACGGAGCGACGGGGCTTCTTTTGGCTGGGAACTGGAAGGTCTGCCAGGCTGCGGTGGAGACGGTGCTGAGCGGCGGCGCGTTGGAGCCACTTCCCGAGTACAGTCGTCGTAGCGTTCATCACTTTCGACAACAACGGCGGGATGAGCGCTATTCCTCCAAGTACTCGACCAAAAAGAGGCCGGCTCAGTTGGCTTTTGATGACGACGATGATGAACGGCCTGATCTTGATCTTAGCTTGAAGGCATCGTCGGAGTTGCGTAGAGATGATCATGATAGAGCGGCGACGCCGTCATCTATGGAAGGCTCGGAAACGACGACGTTGTCAAGAAGTGGTTCGTCGTCGGCAGATTGTACTACTAATAATTCAGAGGGAACAAGGCTTCTAAGACTATTCATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

212

Amino Acids

23.5

Weight (kDa)

6.9

Isoelectric Point (pI)

56.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 2 - 100 1.5e-23 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 559
AccBSI CCGCTC 2 cut(s) 309, 518
AccII CGCG 2 cut(s) 135, 317
AciI CCGC 7 cut(s) 133, 212, 290, 309, 312, 376, 518
AcoI YGGCCR 1 cut(s) 130
AcyI GRCGYC 1 cut(s) 524
AfaI GTAC 3 cut(s) 338, 401, 592
AfeI AGCGCT 1 cut(s) 386
AfiI CCNNNNNNNGG 3 cut(s) 239, 289, 414
AgsI TTSAA 1 cut(s) 478
AjnI CCWGG 1 cut(s) 282
AluBI AGCT 5 cut(s) 6, 92, 98, 185, 474
AluI AGCT 5 cut(s) 6, 92, 98, 185, 474
Alw26I GTCTC 2 cut(s) 169, 290
Ama87I CYCGRG 1 cut(s) 332
Aor51HI AGCGCT 1 cut(s) 386
AoxI GGCC 4 cut(s) 130, 139, 416, 455
ApeKI GCWGC 3 cut(s) 6, 39, 287
ArsI GACNNNNNNTTYG 1 cut(s) 618
Asp700I GAANNNNTTC 1 cut(s) 571
AspLEI GCGC 3 cut(s) 137, 317, 387
AsuHPI GGTGA 1 cut(s) 247
AvaI CYCGRG 1 cut(s) 332
BbsI GAAGAC 1 cut(s) 87
BbvI GCAGC 2 cut(s) 51, 274
BccI CCATC 1 cut(s) 70
BceAI ACGGC 4 cut(s) 146, 389, 470, 511
BcgI CGANNNNNNTGC 2 cut(s) 18, 52
BciT130I CCWGG 1 cut(s) 284
BclI TGATCA 1 cut(s) 505
BcoDI GTCTC 2 cut(s) 169, 290
BfoI RGCGCY 1 cut(s) 388
BglI GCCNNNNNGGC 1 cut(s) 138
BisI GCNGC 7 cut(s) 7, 40, 133, 288, 310, 313, 519
BlpI GCTNAGC 1 cut(s) 305
BlsI GCNGC 7 cut(s) 8, 41, 134, 289, 311, 314, 520
BmcAI AGTACT 1 cut(s) 401
Bme1390I CCNGG 1 cut(s) 284
BmeT110I CYCGRG 1 cut(s) 332
BmiI GGNNCC 1 cut(s) 324
BmrFI CCNGG 1 cut(s) 284
BmsI GCATC 2 cut(s) 5, 491
BpiI GAAGAC 1 cut(s) 87
BplI GAGNNNNNCTC 2 cut(s) 406, 438
Bpu1102I GCTNAGC 1 cut(s) 305
BpuEI CTTGAG 2 cut(s) 72, 78
BsaBI GATNNNNATC 1 cut(s) 465
BsaHI GRCGYC 1 cut(s) 524
BsaWI WCCGGW 1 cut(s) 232
BsaXI ACNNNNNCTCC 2 cut(s) 149, 179
Bsc4I CCNNNNNNNGG 3 cut(s) 239, 289, 414
Bse118I RCCGGY 2 cut(s) 137, 418
Bse1I ACTGG 1 cut(s) 275
Bse3DI GCAATG 1 cut(s) 16
Bse8I GATNNNNATC 1 cut(s) 465
BseBI CCWGG 1 cut(s) 284
BseGI GGATG 3 cut(s) 20, 81, 385
BseJI GATNNNNATC 1 cut(s) 465
BseLI CCNNNNNNNGG 3 cut(s) 239, 289, 414
BseMI GCAATG 1 cut(s) 16
BseMII CTCAG 2 cut(s) 296, 437
BseNI ACTGG 1 cut(s) 275
BseRI GAGGAG 1 cut(s) 134
BseX3I CGGCCG 1 cut(s) 130
BseXI GCAGC 2 cut(s) 51, 274
BseYI CCCAGC 1 cut(s) 263
Bsh1236I CGCG 2 cut(s) 135, 317
Bsh1285I CGRYCG 1 cut(s) 133
BshFI GGCC 4 cut(s) 132, 141, 418, 457
BsiEI CGRYCG 1 cut(s) 133
BsiHKCI CYCGRG 1 cut(s) 332
BsiSI CCGG 3 cut(s) 138, 233, 419
BslI CCNNNNNNNGG 3 cut(s) 239, 289, 414
BsmAI GTCTC 2 cut(s) 169, 290
BsmBI CGTCTC 2 cut(s) 169, 290
BsnI GGCC 4 cut(s) 132, 141, 418, 457
BsoBI CYCGRG 1 cut(s) 332
Bsp143I GATC 3 cut(s) 460, 466, 505
Bsp1720I GCTNAGC 1 cut(s) 305
BspACI CCGC 7 cut(s) 133, 212, 290, 309, 312, 376, 518
BspANI GGCC 4 cut(s) 132, 141, 418, 457
BspCNI CTCAG 2 cut(s) 297, 436
BspFNI CGCG 2 cut(s) 135, 317
BspHI TCATGA 1 cut(s) 508
BspLI GGNNCC 1 cut(s) 324
BsrBI CCGCTC 2 cut(s) 309, 518
BsrDI GCAATG 1 cut(s) 16
BsrFI RCCGGY 2 cut(s) 137, 418
BsrI ACTGG 1 cut(s) 275
BssAI RCCGGY 2 cut(s) 137, 418
BssMI GATC 3 cut(s) 460, 466, 505
BssNI GRCGYC 1 cut(s) 524
Bst2UI CCWGG 1 cut(s) 284
Bst4CI ACNGT 3 cut(s) 109, 301, 341
BstACI GRCGYC 1 cut(s) 524
BstAPI GCANNNNNTGC 1 cut(s) 15
BstC8I GCNNGC 3 cut(s) 53, 139, 420
BstDEI CTNAG 4 cut(s) 305, 423, 470, 623
BstF5I GGATG 3 cut(s) 20, 81, 385
BstFNI CGCG 2 cut(s) 135, 317
BstH2I RGCGCY 1 cut(s) 388
BstHHI GCGC 3 cut(s) 137, 317, 387
BstKTI GATC 3 cut(s) 463, 469, 508
BstMAI GTCTC 2 cut(s) 169, 290
BstMBI GATC 3 cut(s) 460, 466, 505
BstMCI CGRYCG 1 cut(s) 133
BstMWI GCNNNNNNNGC 5 cut(s) 15, 48, 138, 382, 428
BstNI CCWGG 1 cut(s) 284
BstNSI RCATGY 1 cut(s) 55
BstSCI CCNGG 1 cut(s) 282
BstUI CGCG 2 cut(s) 135, 317
BstV1I GCAGC 2 cut(s) 51, 274
BstV2I GAAGAC 1 cut(s) 87
BstZI CGGCCG 1 cut(s) 130
BsuRI GGCC 4 cut(s) 132, 141, 418, 457
BtsCI GGATG 3 cut(s) 20, 81, 385
Cac8I GCNNGC 3 cut(s) 53, 139, 420
CciI TCATGA 1 cut(s) 508
CfoI GCGC 3 cut(s) 137, 317, 387
Cfr10I RCCGGY 2 cut(s) 137, 418
CseI GACGC 1 cut(s) 532
Csp6I GTAC 3 cut(s) 337, 400, 591
CviAII CATG 2 cut(s) 52, 509
CviQI GTAC 3 cut(s) 337, 400, 591
DdeI CTNAG 4 cut(s) 305, 423, 470, 623
DpnI GATC 3 cut(s) 462, 468, 507
DpnII GATC 3 cut(s) 460, 466, 505
DrdI GACNNNNNNGTC 1 cut(s) 559
DseDI GACNNNNNNGTC 1 cut(s) 559
EaeI YGGCCR 1 cut(s) 130
EagI CGGCCG 1 cut(s) 130
EclXI CGGCCG 1 cut(s) 130
Eco47III AGCGCT 1 cut(s) 386
Eco52I CGGCCG 1 cut(s) 130
Eco88I CYCGRG 1 cut(s) 332
EcoRII CCWGG 1 cut(s) 282
EcoT22I ATGCAT 1 cut(s) 68
Esp3I CGTCTC 2 cut(s) 169, 290
FaeI CATG 2 cut(s) 55, 512
FaiI YATR 5 cut(s) 53, 68, 227, 510, 536
FalI AAGNNNNNCTT 2 cut(s) 169, 201
FatI CATG 2 cut(s) 51, 508
FauI CCCGC 1 cut(s) 369
FbaI TGATCA 1 cut(s) 505
Fnu4HI GCNGC 7 cut(s) 7, 40, 133, 288, 310, 313, 519
FokI GGATG 3 cut(s) 27, 88, 392
Fsp4HI GCNGC 7 cut(s) 7, 40, 133, 288, 310, 313, 519
GlaI GCGC 3 cut(s) 136, 316, 386
GluI GCNGC 7 cut(s) 7, 40, 133, 288, 310, 313, 519
GsaI CCCAGC 1 cut(s) 267
HaeII RGCGCY 1 cut(s) 388
HaeIII GGCC 4 cut(s) 132, 141, 418, 457
HapII CCGG 3 cut(s) 138, 233, 419
HgaI GACGC 1 cut(s) 532
HhaI GCGC 3 cut(s) 137, 317, 387
Hin1I GRCGYC 1 cut(s) 524
Hin1II CATG 2 cut(s) 55, 512
Hin6I GCGC 3 cut(s) 135, 315, 385
HinP1I GCGC 3 cut(s) 135, 315, 385
HpaII CCGG 3 cut(s) 138, 233, 419
HphI GGTGA 1 cut(s) 247
Hpy166II GTNNAC 1 cut(s) 238
Hpy188I TCNGA 4 cut(s) 169, 490, 547, 607
Hpy188III TCNNGA 4 cut(s) 332, 464, 509, 564
Hpy8I GTNNAC 1 cut(s) 238
HpyAV CCTTC 4 cut(s) 160, 268, 472, 533
HpyCH4III ACNGT 3 cut(s) 109, 301, 341
HpyCH4IV ACGT 2 cut(s) 58, 557
HpyCH4V TGCA 4 cut(s) 9, 39, 51, 66
HpyF10VI GCNNNNNNNGC 5 cut(s) 15, 48, 138, 382, 428
HpyF3I CTNAG 4 cut(s) 305, 423, 470, 623
HpySE526I ACGT 2 cut(s) 58, 557
Hsp92I GRCGYC 1 cut(s) 524
Hsp92II CATG 2 cut(s) 55, 512
HspAI GCGC 3 cut(s) 135, 315, 385
KroI GCCGGC 2 cut(s) 137, 418
KroNI GCCGGC 2 cut(s) 139, 420
Ksp22I TGATCA 1 cut(s) 505
Kzo9I GATC 3 cut(s) 460, 466, 505
LmnI GCTCC 2 cut(s) 242, 322
LpnPI CCDG 9 cut(s) 151, 195, 246, 249, 256, 269, 296, 432, 471
Lsp1109I GCAGC 2 cut(s) 51, 274
LweI GCATC 2 cut(s) 5, 491
MaeII ACGT 2 cut(s) 58, 557
MalI GATC 3 cut(s) 462, 468, 507
MbiI CCGCTC 2 cut(s) 309, 518
MboI GATC 3 cut(s) 460, 466, 505
MboII GAAGA 2 cut(s) 92, 118
MluCI AATT 2 cut(s) 46, 601
MmeI TCCRAC 2 cut(s) 300, 468
MnlI CCTC 8 cut(s) 96, 152, 155, 202, 213, 403, 408, 601
Mph1103I ATGCAT 1 cut(s) 68
MroNI GCCGGC 2 cut(s) 137, 418
MroXI GAANNNNTTC 1 cut(s) 571
MspI CCGG 3 cut(s) 138, 233, 419
MspR9I CCNGG 1 cut(s) 284
MvaI CCWGG 1 cut(s) 284
MvnI CGCG 2 cut(s) 135, 317
MwoI GCNNNNNNNGC 5 cut(s) 15, 48, 138, 382, 428
NaeI GCCGGC 2 cut(s) 139, 420
NdeII GATC 3 cut(s) 460, 466, 505
NgoMIV GCCGGC 2 cut(s) 137, 418
NlaIII CATG 2 cut(s) 55, 512
NlaIV GGNNCC 1 cut(s) 324
NmeAIII GCCGAG 1 cut(s) 44
NsiI ATGCAT 1 cut(s) 68
NspI RCATGY 1 cut(s) 55
PaeI GCATGC 1 cut(s) 55
PagI TCATGA 1 cut(s) 508
PcsI WCGNNNNNNNCGW 2 cut(s) 165, 551
PdiI GCCGGC 2 cut(s) 139, 420
PdmI GAANNNNTTC 1 cut(s) 571
PflFI GACNNNGTC 2 cut(s) 526, 559
PkrI GCNGC 7 cut(s) 8, 41, 134, 289, 311, 314, 520
Psp6I CCWGG 1 cut(s) 282
PspFI CCCAGC 1 cut(s) 263
PspGI CCWGG 1 cut(s) 282
PspN4I GGNNCC 1 cut(s) 324
PsyI GACNNNGTC 2 cut(s) 526, 559
RsaI GTAC 3 cut(s) 338, 401, 592
RsaNI GTAC 3 cut(s) 337, 400, 591
SatI GCNGC 7 cut(s) 7, 40, 133, 288, 310, 313, 519
Sau3AI GATC 3 cut(s) 460, 466, 505
ScaI AGTACT 1 cut(s) 401
ScrFI CCNGG 1 cut(s) 284
SetI ASST 8 cut(s) 8, 61, 94, 100, 187, 279, 476, 560
SfaNI GCATC 2 cut(s) 5, 491
SfiI GGCCNNNNNGGCC 1 cut(s) 138
SmlI CTYRAG 2 cut(s) 87, 93
SmoI CTYRAG 2 cut(s) 87, 93
SphI GCATGC 1 cut(s) 55
Sse9I AATT 2 cut(s) 46, 601
SsiI CCGC 7 cut(s) 133, 212, 290, 309, 312, 376, 518
StyD4I CCNGG 1 cut(s) 282
TaaI ACNGT 3 cut(s) 109, 301, 341
TaiI ACGT 2 cut(s) 61, 560
TaqI TCGA 2 cut(s) 364, 404
TasI AATT 2 cut(s) 46, 601
TatI WGTACW 3 cut(s) 336, 399, 590
TauI GCSGC 4 cut(s) 135, 312, 315, 521
TseI GCWGC 3 cut(s) 6, 39, 287
TspDTI ATGAA 4 cut(s) 142, 344, 465, 622
TspGWI ACGGA 1 cut(s) 255
Tth111I GACNNNGTC 2 cut(s) 526, 559
XceI RCATGY 1 cut(s) 55
XmnI GAANNNNTTC 1 cut(s) 571
ZrmI AGTACT 1 cut(s) 401
Zsp2I ATGCAT 1 cut(s) 68
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.