Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003326

Physical Location & Seq

Genomic Coordinates Forward (+)

20408274 .. 20411364

Gene Structure 3091 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G55070.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1257 bp

ATGGAAATCGATTCCGCCACCAACGGAAACTCTGACACCGTCATGACGGAATCCGCCGCTACGATCACTCCGTCGCCGGTCGTCGTCTCGTCTTCGAGATCGAATCAATTTACGGAATCTCTCAAGCTTGAGCACCAGCTCCTCCGCGTTCCTTTCGAGCATTACAAGAAGACGATCCGTACCAATCACCGTTCTTTCGAGAAAGAGGTCTCAACCATTGTTAACGGCGTCGGAGAATTGGCTGATTCCGATTGGTCTAAAGACGATACCGTTTCGCGTCTTACTTGCCTTGTTACTCGATTACAAGGCCTCAAACGAAAGTTGGAAGAAGGGAGCAATGTGGAGAATTTGCAAGCCCAGAGATGTCGTGCTCGCATCGATCATTTGGATTCAGTAGATGTGGAAAATATTACTGAATGGAATAATACCAAACTGAAACGGATTCTTGTAGACTACATGCTGCGGATGTCATATTTCGAGACTGCTACAAAGCTTTCGGAAAGCAGCAATATTATGGACCTTGTCGACATTGACATATTTCGAGAAGCTAAGAAGGTGATTGATGCCCTTAAAAATAGGGAGGTAGCTTCTGCATTGACATGGTGTGCTGATAACAAAACGCGGTTGAAAAAGTCAAAGAGCAAATTTGAGTTCCAACTAAGGCTGCAAGAATTCATCGAGTTGGTACGAGTTGATACAGCTGAGAGCTACAAAAAAGCAATCCAGTATGCTCGAAAGCATCTGGCATCATGGGGAACAACCCATATGAAAGAATTGCAGCATGTTCTGGCCACTTTGGCTTTTAAAAGTACCACAGAATGCTCAAAATATAAGGTTTTGTTTGAACTACGACAGTGGGATGTTTTAGTTGATCAGTTTAAACAAGAATTTTGCAAGTTATATGGCATGACGATGGAACCCTTATTGAACATCTACTTACAGGCAGGCTTGTCTGCGCTGAAAACTCCATATGGTTTAGAAGAAGGTTGTACCAAAGAGGACCCTCTCTCACAAGAGAACTTTCGGAAGCTAGCTTTGCCTTTACCGTTCTCCAAGCAGCACCATTCAAAGCTTGTTTGCTATATTTCTAAGGAGCTAATGGACACAGAGAACCCACCACAGGTGCTGCCCAATGGCTACGTCTACAGCACCAAGGCTCTCAAGGAAATGGCGGAAAAGAATGGAGGTAAAATAACATGTCCAAGGACAGGGCTTGTCTGCAACTACACGGAGTTAGTTAAGGCATATATATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019538 GO:0019941 GO:0030163 GO:0032991 GO:0034657 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0071704 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

CLTH

Protein Analysis

418

Amino Acids

47.84

Weight (kDa)

8.4

Isoelectric Point (pI)

36.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CTLH	PF10607	180 - 323	2.7e-46	CTLH/CRA C-terminal to LisH motif domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003326)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55070 AT3G55070
fragaria_vesca	FvH4_7g20680 FvH4_7g20680 FvH4_7g20680
malus_domestica	MD01G1115200.v1.1 MD01G1115600.v1.1 MD07G1183500.v1.1
prunus_persica	Prupe.2G222200_v2.0.a1 Prupe.2G222200_v2.0.a1 Prupe.2G222200_v2.0.a1
pyrus_communis	pycom01g14420 pycom07g17610
rosa_chinensis	RchiOBHm_Chr1g0364711 RchiOBHm_Chr1g0364821 RchiOBHm_Chr1g0364831
rosa_laevigata	RLG00000027464
rosa_multiflora	Rmu_co8292327.1_g000001 Rmu_sc0028465.1_g000001 Rmu_sc0028466.1_g000001 Rmu_ssc0000112.1_g000032
rosa_roxburghii	Rroxscaffold_4G00291710 Rroxscaffold_4G00291720 Rroxscaffold_4G00292120 Rroxscaffold_4G00292130 Rroxscaffold_4G00292150
rosa_rugosa	Rorug01G0318300 Rorug01G0318500
rosa_samantha	Rh1AG327100 Rh1BG288200 Rh1BG288300 Rh1CG304900 Rh1CG305000 Rh1DG319900
rosa_wichuraiana	Rw1G028970 Rw1G028980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	3 cut(s)	450, 525, 1143
AccII	CGCG	3 cut(s)	147, 277, 622
AciI	CCGC	7 cut(s)	15, 54, 57, 145, 463, 622, 1172
AclWI	GGATC	1 cut(s)	169
AcoI	YGGCCR	1 cut(s)	789
AcsI	RAATTY	4 cut(s)	346, 644, 671, 887
AcyI	GRCGYC	1 cut(s)	228
AfaI	GTAC	4 cut(s)	181, 687, 811, 991
AfiI	CCNNNNNNNGG	2 cut(s)	1120, 1208
AflIII	ACRYGT	1 cut(s)	1196
AgsI	TTSAA	4 cut(s)	628, 845, 928, 1068
Alw21I	GWGCWC	2 cut(s)	135, 373
Alw26I	GTCTC	3 cut(s)	91, 214, 473
AlwI	GGATC	1 cut(s)	169
AlwNI	CAGNNNCTG	1 cut(s)	1126
AoxI	GGCC	2 cut(s)	307, 789
ApeKI	GCWGC	6 cut(s)	460, 504, 664, 778, 1057, 1126
ApoI	RAATTY	4 cut(s)	346, 644, 671, 887
AspLEI	GCGC	1 cut(s)	958
AspS9I	GGNCC	2 cut(s)	517, 1000
AsuHPI	GGTGA	2 cut(s)	179, 568
AsuNHI	GCTAGC	1 cut(s)	1030
AvaII	GGWCC	2 cut(s)	517, 1000
BalI	TGGCCA	1 cut(s)	791
BbsI	GAAGAC	2 cut(s)	84, 176
Bbv12I	GWGCWC	2 cut(s)	135, 373
BbvI	GCAGC	6 cut(s)	447, 516, 651, 790, 1069, 1113
BccI	CCATC	1 cut(s)	907
BceAI	ACGGC	1 cut(s)	241
BclI	TGATCA	1 cut(s)	871
BcoDI	GTCTC	3 cut(s)	91, 214, 473
BfaI	CTAG	1 cut(s)	1031
BfmI	CTRYAG	1 cut(s)	1144
BglI	GCCNNNNNGGC	1 cut(s)	797
BisI	GCNGC	7 cut(s)	57, 461, 505, 665, 779, 1058, 1127
BlsI	GCNGC	7 cut(s)	58, 462, 506, 666, 780, 1059, 1128
Bme18I	GGWCC	2 cut(s)	517, 1000
BmgT120I	GGNCC	2 cut(s)	517, 1000
BmiI	GGNNCC	2 cut(s)	918, 1002
BmsI	GCATC	4 cut(s)	384, 553, 748, 755
BmtI	GCTAGC	1 cut(s)	1034
BpiI	GAAGAC	2 cut(s)	84, 176
BpuEI	CTTGAG	3 cut(s)	107, 149, 1145
Bsa29I	ATCGAT	2 cut(s)	9, 378
BsaHI	GRCGYC	1 cut(s)	228
BsaI	GGTCTC	1 cut(s)	214
BsaJI	CCNNGG	2 cut(s)	1152, 1202
BsaXI	ACNNNNNCTCC	2 cut(s)	52, 82
Bsc4I	CCNNNNNNNGG	2 cut(s)	1120, 1208
Bse118I	RCCGGY	1 cut(s)	76
Bse1I	ACTGG	1 cut(s)	724
Bse3DI	GCAATG	1 cut(s)	343
BseCI	ATCGAT	2 cut(s)	9, 378
BseDI	CCNNGG	2 cut(s)	1152, 1202
BseGI	GGATG	2 cut(s)	471, 865
BseLI	CCNNNNNNNGG	2 cut(s)	1120, 1208
BseMI	GCAATG	1 cut(s)	343
BseMII	CTCAG	1 cut(s)	693
BseNI	ACTGG	1 cut(s)	724
BseRI	GAGGAG	1 cut(s)	131
BseXI	GCAGC	6 cut(s)	447, 516, 651, 790, 1069, 1113
Bsh1236I	CGCG	3 cut(s)	147, 277, 622
Bsh1285I	CGRYCG	1 cut(s)	81
BshFI	GGCC	2 cut(s)	309, 791
BshVI	ATCGAT	2 cut(s)	9, 378
BsiEI	CGRYCG	1 cut(s)	81
BsiHKAI	GWGCWC	2 cut(s)	135, 373
BsiSI	CCGG	1 cut(s)	77
BslI	CCNNNNNNNGG	2 cut(s)	1120, 1208
BsmAI	GTCTC	3 cut(s)	91, 214, 473
BsmBI	CGTCTC	1 cut(s)	91
BsmI	GAATGC	1 cut(s)	824
BsnI	GGCC	2 cut(s)	309, 791
Bso31I	GGTCTC	1 cut(s)	214
Bsp1286I	GDGCHC	2 cut(s)	135, 373
Bsp143I	GATC	5 cut(s)	63, 98, 174, 379, 871
BspACI	CCGC	7 cut(s)	15, 54, 57, 145, 463, 622, 1172
BspANI	GGCC	2 cut(s)	309, 791
BspCNI	CTCAG	1 cut(s)	694
BspDI	ATCGAT	2 cut(s)	9, 378
BspFNI	CGCG	3 cut(s)	147, 277, 622
BspHI	TCATGA	2 cut(s)	42, 1253
BspLI	GGNNCC	2 cut(s)	918, 1002
BspOI	GCTAGC	1 cut(s)	1034
BspPI	GGATC	1 cut(s)	169
BspTNI	GGTCTC	1 cut(s)	214
BsrDI	GCAATG	1 cut(s)	343
BsrFI	RCCGGY	1 cut(s)	76
BsrI	ACTGG	1 cut(s)	724
BssAI	RCCGGY	1 cut(s)	76
BssECI	CCNNGG	2 cut(s)	1152, 1202
BssMI	GATC	5 cut(s)	63, 98, 174, 379, 871
BssNI	GRCGYC	1 cut(s)	228
BssT1I	CCWWGG	2 cut(s)	1152, 1202
Bst4CI	ACNGT	5 cut(s)	40, 191, 271, 855, 1047
BstACI	GRCGYC	1 cut(s)	228
BstC8I	GCNNGC	4 cut(s)	354, 373, 946, 1032
BstDEI	CTNAG	4 cut(s)	549, 659, 702, 1089
BstF5I	GGATG	2 cut(s)	471, 865
BstFNI	CGCG	3 cut(s)	147, 277, 622
BstHHI	GCGC	1 cut(s)	958
BstKTI	GATC	5 cut(s)	66, 101, 177, 382, 874
BstMAI	GTCTC	3 cut(s)	91, 214, 473
BstMBI	GATC	5 cut(s)	63, 98, 174, 379, 871
BstMCI	CGRYCG	1 cut(s)	81
BstMWI	GCNNNNNNNGC	2 cut(s)	797, 1036
BstNSI	RCATGY	3 cut(s)	460, 785, 1200
BstSFI	CTRYAG	1 cut(s)	1144
BstUI	CGCG	3 cut(s)	147, 277, 622
BstV1I	GCAGC	6 cut(s)	447, 516, 651, 790, 1069, 1113
BstV2I	GAAGAC	2 cut(s)	84, 176
Bsu15I	ATCGAT	2 cut(s)	9, 378
BsuRI	GGCC	2 cut(s)	309, 791
BsuTUI	ATCGAT	2 cut(s)	9, 378
BtsCI	GGATG	2 cut(s)	471, 865
BtsIMutI	CAGTG	1 cut(s)	860
Cac8I	GCNNGC	4 cut(s)	354, 373, 946, 1032
CaiI	CAGNNNCTG	1 cut(s)	1126
CciI	TCATGA	2 cut(s)	42, 1253
CfoI	GCGC	1 cut(s)	958
Cfr10I	RCCGGY	1 cut(s)	76
Cfr13I	GGNCC	2 cut(s)	517, 1000
ClaI	ATCGAT	2 cut(s)	9, 378
CseI	GACGC	2 cut(s)	217, 266
Csp6I	GTAC	4 cut(s)	180, 686, 810, 990
CviAII	CATG	8 cut(s)	43, 457, 600, 750, 782, 907, 1197, 1254
CviQI	GTAC	4 cut(s)	180, 686, 810, 990
DdeI	CTNAG	4 cut(s)	549, 659, 702, 1089
DpnI	GATC	5 cut(s)	65, 100, 176, 381, 873
DpnII	GATC	5 cut(s)	63, 98, 174, 379, 871
DraI	TTTAAA	2 cut(s)	805, 880
EaeI	YGGCCR	1 cut(s)	789
EciI	GGCGGA	3 cut(s)	4, 43, 1187
Eco130I	CCWWGG	2 cut(s)	1152, 1202
Eco147I	AGGCCT	1 cut(s)	309
Eco31I	GGTCTC	1 cut(s)	214
Eco47I	GGWCC	2 cut(s)	517, 1000
EcoO109I	RGGNCCY	1 cut(s)	1000
EcoRI	GAATTC	1 cut(s)	671
EcoT14I	CCWWGG	2 cut(s)	1152, 1202
ErhI	CCWWGG	2 cut(s)	1152, 1202
Esp3I	CGTCTC	1 cut(s)	91
FaeI	CATG	8 cut(s)	46, 460, 603, 753, 785, 910, 1200, 1257
FatI	CATG	8 cut(s)	42, 456, 599, 749, 781, 906, 1196, 1253
FauNDI	CATATG	2 cut(s)	765, 970
FbaI	TGATCA	1 cut(s)	871
FblI	GTMKAC	3 cut(s)	450, 525, 1143
Fnu4HI	GCNGC	7 cut(s)	57, 461, 505, 665, 779, 1058, 1127
FokI	GGATG	2 cut(s)	478, 872
Fsp4HI	GCNGC	7 cut(s)	57, 461, 505, 665, 779, 1058, 1127
FspBI	CTAG	1 cut(s)	1031
GlaI	GCGC	1 cut(s)	957
GluI	GCNGC	7 cut(s)	57, 461, 505, 665, 779, 1058, 1127
HaeIII	GGCC	2 cut(s)	309, 791
HapII	CCGG	1 cut(s)	77
HgaI	GACGC	2 cut(s)	217, 266
HhaI	GCGC	1 cut(s)	958
Hin1I	GRCGYC	1 cut(s)	228
Hin1II	CATG	8 cut(s)	46, 460, 603, 753, 785, 910, 1200, 1257
Hin6I	GCGC	1 cut(s)	956
HinP1I	GCGC	1 cut(s)	956
HincII	GTYRAC	2 cut(s)	223, 526
HindII	GTYRAC	2 cut(s)	223, 526
HindIII	AAGCTT	3 cut(s)	125, 491, 1070
HinfI	GANTC	7 cut(s)	11, 50, 103, 116, 245, 389, 442
HpaI	GTTAAC	1 cut(s)	223
HpaII	CCGG	1 cut(s)	77
HphI	GGTGA	2 cut(s)	179, 568
Hpy166II	GTNNAC	4 cut(s)	223, 451, 526, 1144
Hpy188I	TCNGA	5 cut(s)	34, 233, 250, 499, 1026
Hpy188III	TCNNGA	6 cut(s)	43, 96, 199, 478, 542, 1254
Hpy8I	GTNNAC	4 cut(s)	223, 451, 526, 1144
Hpy99I	CGWCG	3 cut(s)	76, 86, 233
HpyAV	CCTTC	3 cut(s)	323, 547, 977
HpyCH4III	ACNGT	5 cut(s)	40, 191, 271, 855, 1047
HpyCH4IV	ACGT	1 cut(s)	1140
HpyCH4V	TGCA	6 cut(s)	352, 593, 667, 778, 894, 1221
HpyF10VI	GCNNNNNNNGC	2 cut(s)	797, 1036
HpyF3I	CTNAG	4 cut(s)	549, 659, 702, 1089
HpySE526I	ACGT	1 cut(s)	1140
Hsp92I	GRCGYC	1 cut(s)	228
Hsp92II	CATG	8 cut(s)	46, 460, 603, 753, 785, 910, 1200, 1257
HspAI	GCGC	1 cut(s)	956
Ksp22I	TGATCA	1 cut(s)	871
KspAI	GTTAAC	1 cut(s)	223
Kzo9I	GATC	5 cut(s)	63, 98, 174, 379, 871
LmnI	GCTCC	3 cut(s)	144, 333, 1093
Lsp1109I	GCAGC	6 cut(s)	447, 516, 651, 790, 1069, 1113
LweI	GCATC	4 cut(s)	384, 553, 748, 755
MaeI	CTAG	1 cut(s)	1031
MaeII	ACGT	1 cut(s)	1140
MaeIII	GTNAC	1 cut(s)	292
MalI	GATC	5 cut(s)	65, 100, 176, 381, 873
MboI	GATC	5 cut(s)	63, 98, 174, 379, 871
MboII	GAAGA	4 cut(s)	84, 181, 338, 992
MhlI	GDGCHC	2 cut(s)	135, 373
MlsI	TGGCCA	1 cut(s)	791
MluCI	AATT	7 cut(s)	107, 236, 346, 644, 671, 773, 887
MluNI	TGGCCA	1 cut(s)	791
MmeI	TCCRAC	3 cut(s)	211, 303, 679
MnlI	CCTC	7 cut(s)	152, 199, 320, 574, 991, 1014, 1178
Mox20I	TGGCCA	1 cut(s)	791
MscI	TGGCCA	1 cut(s)	791
MseI	TTAA	5 cut(s)	222, 570, 804, 879, 1239
MslI	CAYNNNNRTG	3 cut(s)	41, 598, 911
Msp20I	TGGCCA	1 cut(s)	791
MspA1I	CMGCKG	1 cut(s)	701
MspI	CCGG	1 cut(s)	77
MssI	GTTTAAAC	1 cut(s)	880
Mva1269I	GAATGC	1 cut(s)	824
MvnI	CGCG	3 cut(s)	147, 277, 622
MwoI	GCNNNNNNNGC	2 cut(s)	797, 1036
NdeI	CATATG	2 cut(s)	765, 970
NdeII	GATC	5 cut(s)	63, 98, 174, 379, 871
NheI	GCTAGC	1 cut(s)	1030
NlaIII	CATG	8 cut(s)	46, 460, 603, 753, 785, 910, 1200, 1257
NlaIV	GGNNCC	2 cut(s)	918, 1002
NspI	RCATGY	3 cut(s)	460, 785, 1200
PagI	TCATGA	2 cut(s)	42, 1253
PceI	AGGCCT	1 cut(s)	309
PciI	ACATGT	1 cut(s)	1196
PcsI	WCGNNNNNNNCGW	1 cut(s)	68
PctI	GAATGC	1 cut(s)	824
PfeI	GAWTC	7 cut(s)	11, 50, 103, 116, 245, 389, 442
PflFI	GACNNNGTC	2 cut(s)	38, 521
PkrI	GCNGC	7 cut(s)	58, 462, 506, 666, 780, 1059, 1128
PmeI	GTTTAAAC	1 cut(s)	880
PpuMI	RGGWCCY	1 cut(s)	1000
PscI	ACATGT	1 cut(s)	1196
Psp5II	RGGWCCY	1 cut(s)	1000
PspN4I	GGNNCC	2 cut(s)	918, 1002
PspPI	GGNCC	2 cut(s)	517, 1000
PspPPI	RGGWCCY	1 cut(s)	1000
PstNI	CAGNNNCTG	1 cut(s)	1126
PsyI	GACNNNGTC	2 cut(s)	38, 521
PvuII	CAGCTG	1 cut(s)	701
RsaI	GTAC	4 cut(s)	181, 687, 811, 991
RsaNI	GTAC	4 cut(s)	180, 686, 810, 990
RseI	CAYNNNNRTG	3 cut(s)	41, 598, 911
SalI	GTCGAC	1 cut(s)	524
SaqAI	TTAA	5 cut(s)	222, 570, 804, 879, 1239
SatI	GCNGC	7 cut(s)	57, 461, 505, 665, 779, 1058, 1127
Sau3AI	GATC	5 cut(s)	63, 98, 174, 379, 871
Sau96I	GGNCC	2 cut(s)	517, 1000
SduI	GDGCHC	2 cut(s)	135, 373
SfaNI	GCATC	4 cut(s)	384, 553, 748, 755
SfcI	CTRYAG	1 cut(s)	1144
SinI	GGWCC	2 cut(s)	517, 1000
SmiMI	CAYNNNNRTG	3 cut(s)	41, 598, 911
SmlI	CTYRAG	3 cut(s)	122, 128, 1160
SmoI	CTYRAG	3 cut(s)	122, 128, 1160
Sse9I	AATT	7 cut(s)	107, 236, 346, 644, 671, 773, 887
SseBI	AGGCCT	1 cut(s)	309
SsiI	CCGC	7 cut(s)	15, 54, 57, 145, 463, 622, 1172
SspI	AATATT	2 cut(s)	409, 511
SspMI	CTAG	1 cut(s)	1031
StuI	AGGCCT	1 cut(s)	309
StyI	CCWWGG	2 cut(s)	1152, 1202
TaaI	ACNGT	5 cut(s)	40, 191, 271, 855, 1047
TaiI	ACGT	1 cut(s)	1143
TasI	AATT	7 cut(s)	107, 236, 346, 644, 671, 773, 887
TauI	GCSGC	1 cut(s)	59
TfiI	GAWTC	7 cut(s)	11, 50, 103, 116, 245, 389, 442
Tru1I	TTAA	5 cut(s)	222, 570, 804, 879, 1239
Tru9I	TTAA	5 cut(s)	222, 570, 804, 879, 1239
TscAI	CASTG	1 cut(s)	860
TseI	GCWGC	6 cut(s)	460, 504, 664, 778, 1057, 1126
TspDTI	ATGAA	2 cut(s)	664, 782
TspGWI	ACGGA	7 cut(s)	39, 60, 62, 128, 167, 454, 1244
TspRI	CASTG	1 cut(s)	860
Tth111I	GACNNNGTC	2 cut(s)	38, 521
VpaK11BI	GGWCC	2 cut(s)	517, 1000
XapI	RAATTY	4 cut(s)	346, 644, 671, 887
XceI	RCATGY	3 cut(s)	460, 785, 1200
XmiI	GTMKAC	3 cut(s)	450, 525, 1143
XspI	CTAG	1 cut(s)	1031

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.