Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0003326

Physical Location & Seq

Genomic Coordinates Forward (+)

43695140 .. 43697328

Gene Structure 2189 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0318300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1455 bp

ATGGATGATCTAATCATCTCTCCTTCTTCGTCTTCTTCCTTGGTTTCACTCCCACAAGAACCAACTCTCCAACAGAGGCTGCAGTTCATACTCCAAAGCCAGCCGGAGCTGTGGTCTTACGCCATTTTCTGGCAGGCCTCAAACGACGTCGAAAATGGCCGCCTCCTTCTCGGTTGGGGAGACGGCCATTTTCAGTGCCCCAAGAACCCATCACCCAACCACAACCACAACAACAGCCTATCGTATTCGGGAGGAGCGCTACACTCCGACAGAAGAAAAATCCTAAAGGGCATACAGTCCATCCTCAACGACAGCAACCCGGAGCTCGACATGGACAACTTCATGGCCCTAAACGGCGATGTCTCGGACGCCGAGTGGTTCTATGTCATGTCGTTGACTCGATCTTTCGCCGTCGGGGACGGCTCTATTCCCGGCAAGGCCTTCGGCTCCGGGACCTCAATCTGGCTGAGCGGGGCCCACGAGCTTCAGTTCAACAACTGCGAGAGAGCCAAAGAGGCCCAAATCCAGGGGATCGAGACCTTGATCTGCATCCCAACTTCCGACGGTGTTCTTGAAATGGGTTCCTCCGGTTTGATCAGGGAGAACTGGGGGTTGATCCAGCAAGCCAAGTCGTTGTTCGGGTCGGATCAGCCCGACCCGGAAACAAGACCGCTCGAGTTCATCAACCGAAACTTCTCCTTCGCCGACATCGGCATCATTGCCGGCGTGCAGGAAGAGGATCACAGCTCGTACAATGACGACAAGAAACATGTTTTTGGTTCTAGCAAGAAGAAGAACGGAGCTCCAAATCCAAACCCGGACTTCGCAGATTCCGACTGCCAGATGAAAAGAGCGCCGAAGAAACGGGGCCGGAAACCCGGGCTGGGCCGAGACACTCCGCTTAACCACGTGGAGGCGGAGCGGCAGCGGCGGGAGAAGCTCAACCACCGGTTCTACGCGCTACGCGCGGTGGTGCCCAACGTGTCGAGAATGGACAAGGCGTCGCTGCTGTCCGACGCCGTGTCGTACATCAACGACCTGAAGGCCAAGGTGGACGAGCTGGAGTCGAAGCTGCAGAGGGAATCAAAGAAAGTCAAAGTGGAAATGGCGGACAACCAGGACAACCAGAGCACCACCACCACCGCCTCCGTGGAGCAAACACAATCAGTAAGGCCTGATATCAATAACACCAACAACGGGTCGGGTCTCGAGATTGAGGTGAAGATAGTGGGCACGGACGCCATGATTAGGGTGCAGTCGGAGAATGTGAACTACCCATCTGCGAGGTTAATGACGGCGATGCGTGACTTAGAGTTCCGCATCCACCATGCGAGCTTGTCAAGCATCAATGATCTTATGCTCCAAGATATTGTGGTGAAGGTTCCTGATAATATGAGAAGCGAAGAAGGTCTCAAAGCTGCTCTACTCGGAATATTAGATCAAAACCAAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019538 GO:0019941 GO:0030163 GO:0032991 GO:0034657 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0071704 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

CLTH

Protein Analysis

484

Amino Acids

53.72

Weight (kDa)

5.49

Isoelectric Point (pI)

41.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bHLH-MYC_N	PF14215	23 - 213	2.8e-49	bHLH-MYC and R2R3-MYB transcription factors N-terminal
HLH	PF00010	302 - 348	8.9e-12	Helix-loop-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003326)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55070 AT3G55070
fragaria_vesca	FvH4_7g20680 FvH4_7g20680 FvH4_7g20680
malus_domestica	MD01G1115200.v1.1 MD01G1115600.v1.1 MD07G1183500.v1.1
prunus_persica	Prupe.2G222200_v2.0.a1 Prupe.2G222200_v2.0.a1 Prupe.2G222200_v2.0.a1
pyrus_communis	pycom01g14420 pycom07g17610
rosa_chinensis	RchiOBHm_Chr1g0364711 RchiOBHm_Chr1g0364821 RchiOBHm_Chr1g0364831
rosa_laevigata	RLG00000027464
rosa_multiflora	Rmu_co8292327.1_g000001 Rmu_sc0028465.1_g000001 Rmu_sc0028466.1_g000001 Rmu_ssc0000112.1_g000032
rosa_roxburghii	Rroxscaffold_4G00291710 Rroxscaffold_4G00291720 Rroxscaffold_4G00292120 Rroxscaffold_4G00292130 Rroxscaffold_4G00292150
rosa_rugosa	Rorug01G0318300 Rorug01G0318500
rosa_samantha	Rh1AG327100 Rh1BG288200 Rh1BG288300 Rh1CG304900 Rh1CG305000 Rh1DG319900
rosa_wichuraiana	Rw1G028970 Rw1G028980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	150
AccB1I	GGYRCC	1 cut(s)	973
AccB7I	CCANNNNNTGG	1 cut(s)	129
AccBSI	CCGCTC	3 cut(s)	471, 673, 922
AccII	CGCG	3 cut(s)	959, 966, 968
AclWI	GGATC	4 cut(s)	539, 610, 654, 747
AcoI	YGGCCR	2 cut(s)	157, 184
AcuI	CTGAAG	2 cut(s)	470, 1061
AcvI	CACGTG	1 cut(s)	910
AcyI	GRCGYC	5 cut(s)	147, 369, 1001, 1017, 1239
AfaI	GTAC	2 cut(s)	752, 1028
AfeI	AGCGCT	1 cut(s)	258
AfiI	CCNNNNNNNGG	7 cut(s)	129, 462, 526, 884, 913, 1197, 1248
AflIII	ACRYGT	2 cut(s)	769, 981
AgeI	ACCGGT	1 cut(s)	948
AgsI	TTSAA	2 cut(s)	493, 575
AhdI	GACNNNNNGTC	2 cut(s)	1000, 1021
AjnI	CCWGG	2 cut(s)	525, 1116
AjuI	GAANNNNNNNTTGG	2 cut(s)	620, 652
AloI	GAACNNNNNNTCC	2 cut(s)	51, 83
Alw21I	GWGCWC	3 cut(s)	327, 805, 1133
Alw26I	GTCTC	6 cut(s)	174, 367, 530, 885, 1211, 1415
AlwI	GGATC	4 cut(s)	539, 610, 654, 747
AlwNI	CAGNNNCTG	1 cut(s)	79
Ama87I	CYCGRG	3 cut(s)	674, 878, 1208
Aor51HI	AGCGCT	1 cut(s)	258
ApaI	GGGCCC	1 cut(s)	478
ApeKI	GCWGC	5 cut(s)	79, 925, 1006, 1072, 1418
AsiGI	ACCGGT	1 cut(s)	948
AspLEI	GCGC	4 cut(s)	259, 856, 961, 968
AspS9I	GGNCC	7 cut(s)	346, 453, 474, 475, 517, 868, 886
AsuC2I	CCSGG	7 cut(s)	320, 432, 451, 659, 818, 879, 880
AsuHPI	GGTGA	3 cut(s)	204, 1231, 1387
AvaI	CYCGRG	3 cut(s)	674, 878, 1208
AvaII	GGWCC	1 cut(s)	453
BaeGI	GKGCMC	4 cut(s)	200, 478, 978, 1235
BanI	GGYRCC	1 cut(s)	973
BanII	GRGCYC	3 cut(s)	327, 478, 805
BauI	CACGAG	1 cut(s)	479
BbrPI	CACGTG	1 cut(s)	910
BbsI	GAAGAC	1 cut(s)	24
Bbv12I	GWGCWC	3 cut(s)	327, 805, 1133
BbvI	GCAGC	5 cut(s)	66, 937, 993, 1059, 1405
BccI	CCATC	3 cut(s)	217, 308, 1285
BceAI	ACGGC	6 cut(s)	199, 370, 395, 436, 1004, 1311
BcgI	CGANNNNNNTGC	2 cut(s)	424, 458
BciT130I	CCWGG	2 cut(s)	527, 1118
BclI	TGATCA	1 cut(s)	594
BcnI	CCSGG	7 cut(s)	320, 432, 451, 659, 818, 879, 880
BcoDI	GTCTC	6 cut(s)	174, 367, 530, 885, 1211, 1415
BfaI	CTAG	1 cut(s)	783
BfmI	CTRYAG	2 cut(s)	80, 1073
BfoI	RGCGCY	2 cut(s)	260, 857
BglI	GCCNNNNNGGC	1 cut(s)	515
BisI	GCNGC	8 cut(s)	80, 160, 923, 926, 929, 1007, 1073, 1419
BlpI	GCTNAGC	1 cut(s)	467
BlsI	GCNGC	8 cut(s)	81, 161, 924, 927, 930, 1008, 1074, 1420
Bme1390I	CCNGG	9 cut(s)	320, 432, 451, 527, 659, 818, 879, 880, 1118
Bme18I	GGWCC	1 cut(s)	453
BmeRI	GACNNNNNGTC	2 cut(s)	1000, 1021
BmeT110I	CYCGRG	3 cut(s)	674, 878, 1208
BmgT120I	GGNCC	7 cut(s)	346, 453, 474, 475, 517, 868, 886
BmiI	GGNNCC	8 cut(s)	448, 454, 475, 476, 583, 869, 975, 1383
BmrFI	CCNGG	9 cut(s)	320, 432, 451, 527, 659, 818, 879, 880, 1118
BmrI	ACTGGG	1 cut(s)	616
BmsI	GCATC	5 cut(s)	558, 723, 1290, 1329, 1353
BmuI	ACTGGG	1 cut(s)	616
BpiI	GAAGAC	1 cut(s)	24
BpmI	CTGGAG	1 cut(s)	1082
Bpu1102I	GCTNAGC	1 cut(s)	467
BpuMI	CCSGG	7 cut(s)	320, 432, 451, 659, 818, 879, 880
BsaAI	YACGTR	1 cut(s)	910
BsaBI	GATNNNNATC	1 cut(s)	548
BsaHI	GRCGYC	5 cut(s)	147, 369, 1001, 1017, 1239
BsaI	GGTCTC	3 cut(s)	530, 1211, 1415
BsaJI	CCNNGG	5 cut(s)	39, 526, 878, 1047, 1149
BsaWI	WCCGGW	2 cut(s)	587, 948
BsaXI	ACNNNNNCTCC	4 cut(s)	51, 81, 98, 128
Bsc4I	CCNNNNNNNGG	7 cut(s)	129, 462, 526, 884, 913, 1197, 1248
Bse118I	RCCGGY	2 cut(s)	722, 948
Bse1I	ACTGG	1 cut(s)	611
Bse3DI	GCAATG	1 cut(s)	717
Bse8I	GATNNNNATC	1 cut(s)	548
BseBI	CCWGG	2 cut(s)	527, 1118
BseDI	CCNNGG	5 cut(s)	39, 526, 878, 1047, 1149
BseGI	GGATG	4 cut(s)	10, 300, 549, 1320
BseJI	GATNNNNATC	1 cut(s)	548
BseLI	CCNNNNNNNGG	7 cut(s)	129, 462, 526, 884, 913, 1197, 1248
BseMI	GCAATG	1 cut(s)	717
BseMII	CTCAG	1 cut(s)	458
BseNI	ACTGG	1 cut(s)	611
BseRI	GAGGAG	1 cut(s)	267
BseSI	GKGCMC	4 cut(s)	200, 478, 978, 1235
BseXI	GCAGC	5 cut(s)	66, 937, 993, 1059, 1405
BseYI	CCCAGC	1 cut(s)	883
BsgI	GTGCAG	2 cut(s)	749, 1274
Bsh1236I	CGCG	3 cut(s)	959, 966, 968
BshNI	GGYRCC	1 cut(s)	973
BshTI	ACCGGT	1 cut(s)	948
BsiHKAI	GWGCWC	3 cut(s)	327, 805, 1133
BsiHKCI	CYCGRG	3 cut(s)	674, 878, 1208
BslFI	GGGAC	2 cut(s)	431, 466
BslI	CCNNNNNNNGG	7 cut(s)	129, 462, 526, 884, 913, 1197, 1248
BsmAI	GTCTC	6 cut(s)	174, 367, 530, 885, 1211, 1415
BsmBI	CGTCTC	1 cut(s)	174
BsmFI	GGGAC	2 cut(s)	431, 466
Bso31I	GGTCTC	3 cut(s)	530, 1211, 1415
BsoBI	CYCGRG	3 cut(s)	674, 878, 1208
Bsp120I	GGGCCC	1 cut(s)	474
Bsp1286I	GDGCHC	7 cut(s)	200, 327, 478, 805, 978, 1133, 1235
Bsp1720I	GCTNAGC	1 cut(s)	467
BspCNI	CTCAG	1 cut(s)	459
BspFNI	CGCG	3 cut(s)	959, 966, 968
BspLI	GGNNCC	8 cut(s)	448, 454, 475, 476, 583, 869, 975, 1383
BspMAI	CTGCAG	2 cut(s)	84, 1077
BspPI	GGATC	4 cut(s)	539, 610, 654, 747
BspT107I	GGYRCC	1 cut(s)	973
BspTNI	GGTCTC	3 cut(s)	530, 1211, 1415
BsrBI	CCGCTC	3 cut(s)	471, 673, 922
BsrDI	GCAATG	1 cut(s)	717
BsrFI	RCCGGY	2 cut(s)	722, 948
BsrI	ACTGG	1 cut(s)	611
BssAI	RCCGGY	2 cut(s)	722, 948
BssECI	CCNNGG	5 cut(s)	39, 526, 878, 1047, 1149
BssNI	GRCGYC	5 cut(s)	147, 369, 1001, 1017, 1239
BssSI	CACGAG	1 cut(s)	479
BssT1I	CCWWGG	2 cut(s)	39, 1047
Bst2BI	CACGAG	1 cut(s)	479
Bst2UI	CCWGG	2 cut(s)	527, 1118
Bst4CI	ACNGT	2 cut(s)	297, 566
Bst6I	CTCTTC	1 cut(s)	729
BstACI	GRCGYC	5 cut(s)	147, 369, 1001, 1017, 1239
BstBAI	YACGTR	1 cut(s)	910
BstC8I	GCNNGC	6 cut(s)	101, 135, 624, 724, 728, 1333
BstDEI	CTNAG	2 cut(s)	467, 1309
BstDSI	CCRYGG	1 cut(s)	1149
BstF5I	GGATG	4 cut(s)	10, 300, 549, 1320
BstFNI	CGCG	3 cut(s)	959, 966, 968
BstH2I	RGCGCY	2 cut(s)	260, 857
BstHHI	GCGC	4 cut(s)	259, 856, 961, 968
BstMAI	GTCTC	6 cut(s)	174, 367, 530, 885, 1211, 1415
BstMWI	GCNNNNNNNGC	5 cut(s)	515, 928, 937, 965, 1341
BstNI	CCWGG	2 cut(s)	527, 1118
BstNSI	RCATGY	1 cut(s)	773
BstSCI	CCNGG	9 cut(s)	318, 430, 449, 525, 657, 816, 877, 878, 1116
BstSFI	CTRYAG	2 cut(s)	80, 1073
BstSLI	GKGCMC	4 cut(s)	200, 478, 978, 1235
BstUI	CGCG	3 cut(s)	959, 966, 968
BstV1I	GCAGC	5 cut(s)	66, 937, 993, 1059, 1405
BstV2I	GAAGAC	1 cut(s)	24
BtgI	CCRYGG	1 cut(s)	1149
BtgZI	GCGATG	2 cut(s)	372, 1313
BtsCI	GGATG	4 cut(s)	10, 300, 549, 1320
BtsIMutI	CAGTG	1 cut(s)	200
Cac8I	GCNNGC	6 cut(s)	101, 135, 624, 724, 728, 1333
CaiI	CAGNNNCTG	1 cut(s)	79
CfoI	GCGC	4 cut(s)	259, 856, 961, 968
Cfr10I	RCCGGY	2 cut(s)	722, 948
Cfr13I	GGNCC	7 cut(s)	346, 453, 474, 475, 517, 868, 886
Cfr9I	CCCGGG	1 cut(s)	878
CseI	GACGC	4 cut(s)	377, 990, 1025, 1247
Csp6I	GTAC	2 cut(s)	751, 1027
CspAI	ACCGGT	1 cut(s)	948
CviAII	CATG	6 cut(s)	331, 343, 388, 770, 1243, 1328
CviQI	GTAC	2 cut(s)	751, 1027
DdeI	CTNAG	2 cut(s)	467, 1309
DriI	GACNNNNNGTC	2 cut(s)	1000, 1021
EaeI	YGGCCR	2 cut(s)	157, 184
Eam1104I	CTCTTC	1 cut(s)	729
Eam1105I	GACNNNNNGTC	2 cut(s)	1000, 1021
EarI	CTCTTC	1 cut(s)	729
EciI	GGCGGA	2 cut(s)	932, 1124
Ecl136II	GAGCTC	2 cut(s)	325, 803
Eco130I	CCWWGG	2 cut(s)	39, 1047
Eco147I	AGGCCT	3 cut(s)	137, 440, 1174
Eco24I	GRGCYC	3 cut(s)	327, 478, 805
Eco31I	GGTCTC	3 cut(s)	530, 1211, 1415
Eco32I	GATATC	1 cut(s)	1180
Eco47I	GGWCC	1 cut(s)	453
Eco47III	AGCGCT	1 cut(s)	258
Eco53kI	GAGCTC	2 cut(s)	325, 803
Eco57I	CTGAAG	2 cut(s)	470, 1061
Eco72I	CACGTG	1 cut(s)	910
Eco88I	CYCGRG	3 cut(s)	674, 878, 1208
EcoICRI	GAGCTC	2 cut(s)	325, 803
EcoO109I	RGGNCCY	2 cut(s)	453, 474
EcoRII	CCWGG	2 cut(s)	525, 1116
EcoRV	GATATC	1 cut(s)	1180
EcoT14I	CCWWGG	2 cut(s)	39, 1047
EcoT38I	GRGCYC	3 cut(s)	327, 478, 805
ErhI	CCWWGG	2 cut(s)	39, 1047
Esp3I	CGTCTC	1 cut(s)	174
FaeI	CATG	6 cut(s)	334, 346, 391, 773, 1246, 1331
FaqI	GGGAC	2 cut(s)	431, 466
FatI	CATG	6 cut(s)	330, 342, 387, 769, 1242, 1327
FauI	CCCGC	2 cut(s)	464, 924
FbaI	TGATCA	1 cut(s)	594
Fnu4HI	GCNGC	8 cut(s)	80, 160, 923, 926, 929, 1007, 1073, 1419
FokI	GGATG	4 cut(s)	17, 287, 536, 1307
FriOI	GRGCYC	3 cut(s)	327, 478, 805
Fsp4HI	GCNGC	8 cut(s)	80, 160, 923, 926, 929, 1007, 1073, 1419
FspBI	CTAG	1 cut(s)	783
GlaI	GCGC	4 cut(s)	258, 855, 960, 967
GluI	GCNGC	8 cut(s)	80, 160, 923, 926, 929, 1007, 1073, 1419
GsaI	CCCAGC	1 cut(s)	887
GsuI	CTGGAG	1 cut(s)	1082
HaeII	RGCGCY	2 cut(s)	260, 857
HgaI	GACGC	4 cut(s)	377, 990, 1025, 1247
HhaI	GCGC	4 cut(s)	259, 856, 961, 968
Hin1I	GRCGYC	5 cut(s)	147, 369, 1001, 1017, 1239
Hin1II	CATG	6 cut(s)	334, 346, 391, 773, 1246, 1331
Hin6I	GCGC	4 cut(s)	257, 854, 959, 966
HinP1I	GCGC	4 cut(s)	257, 854, 959, 966
HincII	GTYRAC	1 cut(s)	396
HindII	GTYRAC	1 cut(s)	396
HindIII	AAGCTT	1 cut(s)	1449
HinfI	GANTC	4 cut(s)	397, 830, 1064, 1082
HphI	GGTGA	3 cut(s)	204, 1231, 1387
Hpy166II	GTNNAC	3 cut(s)	396, 1054, 1270
Hpy188I	TCNGA	8 cut(s)	268, 367, 562, 646, 835, 1015, 1261, 1430
Hpy188III	TCNNGA	7 cut(s)	249, 535, 572, 987, 1208, 1210, 1385
Hpy8I	GTNNAC	3 cut(s)	396, 1054, 1270
Hpy99I	CGWCG	6 cut(s)	149, 152, 416, 566, 1006, 1019
HpyAV	CCTTC	7 cut(s)	33, 176, 451, 709, 1036, 1372, 1400
HpyCH4III	ACNGT	2 cut(s)	297, 566
HpyCH4IV	ACGT	3 cut(s)	147, 909, 981
HpyCH4V	TGCA	5 cut(s)	82, 549, 730, 1075, 1255
HpyF10VI	GCNNNNNNNGC	5 cut(s)	515, 928, 937, 965, 1341
HpyF3I	CTNAG	2 cut(s)	467, 1309
HpySE526I	ACGT	3 cut(s)	147, 909, 981
Hsp92I	GRCGYC	5 cut(s)	147, 369, 1001, 1017, 1239
Hsp92II	CATG	6 cut(s)	334, 346, 391, 773, 1246, 1331
HspAI	GCGC	4 cut(s)	257, 854, 959, 966
KroI	GCCGGC	1 cut(s)	722
KroNI	GCCGGC	1 cut(s)	724
Ksp22I	TGATCA	1 cut(s)	594
LmnI	GCTCC	9 cut(s)	106, 254, 322, 452, 800, 808, 919, 1153, 1365
Lsp1109I	GCAGC	5 cut(s)	66, 937, 993, 1059, 1405
LweI	GCATC	5 cut(s)	558, 723, 1290, 1329, 1353
MaeI	CTAG	1 cut(s)	783
MaeII	ACGT	3 cut(s)	147, 909, 981
MaeIII	GTNAC	1 cut(s)	1304
MbiI	CCGCTC	3 cut(s)	471, 673, 922
MhlI	GDGCHC	7 cut(s)	200, 327, 478, 805, 978, 1133, 1235
MlyI	GAGTC	2 cut(s)	391, 1073
MmeI	TCCRAC	7 cut(s)	94, 291, 585, 624, 858, 1038, 1239
MroNI	GCCGGC	1 cut(s)	722
MseI	TTAA	3 cut(s)	903, 1289, 1453
MspA1I	CMGCKG	1 cut(s)	928
MspR9I	CCNGG	9 cut(s)	320, 432, 451, 527, 659, 818, 879, 880, 1118
MvaI	CCWGG	2 cut(s)	527, 1118
MvnI	CGCG	3 cut(s)	959, 966, 968
MwoI	GCNNNNNNNGC	5 cut(s)	515, 928, 937, 965, 1341
NaeI	GCCGGC	1 cut(s)	724
NciI	CCSGG	7 cut(s)	320, 432, 451, 659, 818, 879, 880
NgoMIV	GCCGGC	1 cut(s)	722
NlaIII	CATG	6 cut(s)	334, 346, 391, 773, 1246, 1331
NlaIV	GGNNCC	8 cut(s)	448, 454, 475, 476, 583, 869, 975, 1383
NmeAIII	GCCGAG	2 cut(s)	397, 914
NmuCI	GTSAC	1 cut(s)	1304
NspI	RCATGY	1 cut(s)	773
PaeR7I	CTCGAG	2 cut(s)	674, 1208
PceI	AGGCCT	3 cut(s)	137, 440, 1174
PciI	ACATGT	1 cut(s)	769
PcsI	WCGNNNNNNNCGW	1 cut(s)	831
PdiI	GCCGGC	1 cut(s)	724
PfeI	GAWTC	2 cut(s)	830, 1082
PflMI	CCANNNNNTGG	1 cut(s)	129
PfoI	TCCNGGA	1 cut(s)	449
PinAI	ACCGGT	1 cut(s)	948
PkrI	GCNGC	8 cut(s)	81, 161, 924, 927, 930, 1008, 1074, 1420
PleI	GAGTC	2 cut(s)	391, 1072
PmaCI	CACGTG	1 cut(s)	910
PmlI	CACGTG	1 cut(s)	910
PpsI	GAGTC	2 cut(s)	391, 1072
Ppu21I	YACGTR	1 cut(s)	910
PpuMI	RGGWCCY	1 cut(s)	453
PscI	ACATGT	1 cut(s)	769
Psp124BI	GAGCTC	2 cut(s)	327, 805
Psp5II	RGGWCCY	1 cut(s)	453
Psp6I	CCWGG	2 cut(s)	525, 1116
PspCI	CACGTG	1 cut(s)	910
PspFI	CCCAGC	1 cut(s)	883
PspGI	CCWGG	2 cut(s)	525, 1116
PspN4I	GGNNCC	8 cut(s)	448, 454, 475, 476, 583, 869, 975, 1383
PspOMI	GGGCCC	1 cut(s)	474
PspPI	GGNCC	7 cut(s)	346, 453, 474, 475, 517, 868, 886
PspPPI	RGGWCCY	1 cut(s)	453
PspXI	VCTCGAGB	1 cut(s)	674
PstI	CTGCAG	2 cut(s)	84, 1077
PstNI	CAGNNNCTG	1 cut(s)	79
RsaI	GTAC	2 cut(s)	752, 1028
RsaNI	GTAC	2 cut(s)	751, 1027
SacI	GAGCTC	2 cut(s)	327, 805
SaqAI	TTAA	3 cut(s)	903, 1289, 1453
SatI	GCNGC	8 cut(s)	80, 160, 923, 926, 929, 1007, 1073, 1419
Sau96I	GGNCC	7 cut(s)	346, 453, 474, 475, 517, 868, 886
SchI	GAGTC	2 cut(s)	391, 1073
ScrFI	CCNGG	9 cut(s)	320, 432, 451, 527, 659, 818, 879, 880, 1118
SduI	GDGCHC	7 cut(s)	200, 327, 478, 805, 978, 1133, 1235
SfaNI	GCATC	5 cut(s)	558, 723, 1290, 1329, 1353
SfcI	CTRYAG	2 cut(s)	80, 1073
Sfr274I	CTCGAG	2 cut(s)	674, 1208
SinI	GGWCC	1 cut(s)	453
SlaI	CTCGAG	2 cut(s)	674, 1208
SmaI	CCCGGG	1 cut(s)	880
SmlI	CTYRAG	2 cut(s)	674, 1208
SmoI	CTYRAG	2 cut(s)	674, 1208
SseBI	AGGCCT	3 cut(s)	137, 440, 1174
SspI	AATATT	1 cut(s)	1434
SspMI	CTAG	1 cut(s)	783
SstI	GAGCTC	2 cut(s)	327, 805
StuI	AGGCCT	3 cut(s)	137, 440, 1174
StyD4I	CCNGG	9 cut(s)	318, 430, 449, 525, 657, 816, 877, 878, 1116
StyI	CCWWGG	2 cut(s)	39, 1047
TaaI	ACNGT	2 cut(s)	297, 566
TaiI	ACGT	3 cut(s)	150, 912, 984
TaqI	TCGA	8 cut(s)	150, 327, 400, 534, 675, 986, 1067, 1209
TauI	GCSGC	3 cut(s)	162, 925, 931
TfiI	GAWTC	2 cut(s)	830, 1082
Tru1I	TTAA	3 cut(s)	903, 1289, 1453
Tru9I	TTAA	3 cut(s)	903, 1289, 1453
TscAI	CASTG	1 cut(s)	200
TseFI	GTSAC	1 cut(s)	1304
TseI	GCWGC	5 cut(s)	79, 925, 1006, 1072, 1418
Tsp45I	GTSAC	1 cut(s)	1304
TspDTI	ATGAA	4 cut(s)	76, 331, 670, 860
TspGWI	ACGGA	3 cut(s)	813, 1138, 1250
TspMI	CCCGGG	1 cut(s)	878
TspRI	CASTG	1 cut(s)	200
Van91I	CCANNNNNTGG	1 cut(s)	129
VpaK11BI	GGWCC	1 cut(s)	453
XceI	RCATGY	1 cut(s)	773
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1147
XhoI	CTCGAG	2 cut(s)	674, 1208
XmaI	CCCGGG	1 cut(s)	878
XspI	CTAG	1 cut(s)	783
ZraI	GACGTC	1 cut(s)	148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.