Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0003326

Physical Location & Seq

Genomic Coordinates Reverse (-)

11906220 .. 11915687

Gene Structure 9468 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027464

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4347 bp

ATGGAGATGGACTCCCTCCCCAACGGCACCTCCGCCTCCCCGAGCCCAGGCCCAAGCCCAAGCCCAAGCCCAGCCACCGCACCCCCGCCGTCCTTGAAGCTCGGCCACCTCTCCGACTCCTTGAAGCTCGAGCACCAGTTCCTCCGAGTCCCCTTCGAGCACTACAAGAAGACGATCCGCGCCAACCACCGCGTCGCCGAGAAGGAGATGTCCGCCGTCATCAACGGCGTCAACGAAGCCGCCGACCGCGACGACATGCTCTGCGACGACGCCGTTAGTCACCTCAATTCCCTCGTCTCCAGGCTCCAAGGCCTCAAACGAAAGCTGGAAGAGGGGAGCAAGACTGAGCACTTACAGGCGCAGAGGTGCCGGGCGAGGCTGGATCATTTAGAATCGGCAGATGTGGAGAATTTGTCAGAATGGAACAATGTGCGCTTGAACAGGATCCTTGTGGACTACATGTTGAGGATGTCTTATTATGATACTGCGGTTAAGCTGGCCGAAAGCCAGAATATTCAGGATCTTGTTGATATTGATGCATTTCAAGAAGCCAGAAAGGTTATTGAAGCTCTCCAGAATAAGGAGGTAGGCCCTGCCCTAGCCTGGTGTGCTGAGAACAAGTCAAGGTTAAAGAAATCCAAGAGCAAATTGGAGTTTCAGCTAAGACTTCAAGAGTTTATAGAGTTGGTACGAGCTGAAAATAACTTACGAGCTATCACATATGCCCAGAAATACCTTGCACCATGGGGTACTACCTATATGAAAGAATTGCAGCGGGTCTTTGTAACAGTAGCTTATAAGAGTACTACTGAATGTGGTACATACAAGGTTTTATTTGAACCAAAACAATGGGATTACCTGGTTGACCAATTCAAACAGGAATTCTGCAAGTTATATGGCATGACACTTGAGCCTCTGCTGAATATTTATCTGCAAGCAGGACTATCTGCTCTGAAAACTCCATATTGTTATGAAGATGATTGCACCAAGGAGGATCCACTGTCACAGGAAGGTTTCCGTAAGCTAGCCCTGCCATTACCTTATTCTAAGCAGCATCACTCAAAGCTTGTTTGCTACATAACTAAGGAACTGATGGACACGGAAAATCCACCACAAGTTCTGCCAAACGGCCGTGTCTACAGCACTAAGGCCCTGGAAGAAATGGCCAAGAAGAATGATGGGAAAATTACTTGTCCGAGGACAGATGTAGTTGTGGAGAACGGGAAAGAGAAAGCTGCAAGAAATACAGATTCGAGTAAGAGATGGCTGACGATGAAGGAGATTACAGATCCTAAGGGGCCTTTTTTTCCCAAGTGGAGAATGATATTTATAGTGTCATGTCTGTTTGCTGTACTATTGGATCCTTTGTTCCTCTACATTCCTATGATCAATGATGATGCCAAGTGCATGAGTTTGGATAGAAACTTGAAGATAGCAGCTCCTGTCTTCCGAATGGTCACGGATGTCTTTTACATACTGAATATTATTCTTCAAGTTTATAAATCCGAGAAATGGTTAGCTTTCATCAATGCATTTCGGTCAGGAAGCTGCTCATCTGTATTATCGAACTTGAGGAGTATCTCACCTAAGATGATGTGGAAGTCATACATACTAATCGATGTTTTCGCTGTTCTTCCCCTTCCACAGGTAGTAATTCTCATCTTCTTTTCAAAAATGAGGGGCGTGAGATCTTTGAATACAAGGAAGCTTCTGAGCTTTCTTGTTTTGGTGCAATATGTTCCACGGGTCCTTCGCATCTACCTATCGTGCAAGGAACCTAAAAAGTCTTCCAAAGAAGAGATTGCAACATGGGTCAAAGGTGTACTCAACTTCTTTATGTACATCCTTGCCAGTCATGTACTTGGAGCCTGTTGGTACTTTTTTGCTGTTGAAAGACTCACAAATTGTTGGCAACATGCCTGTCAAAATGAAAATGGATGTGTTCCTAGTACTTTTGACTGTCACGATCACAAGTCATTGAGAAATACAACATTACTGAATGACTTATGCCCAGTAGATCCACCAAATGCAAAGCTGTTTGATTTTGGTATCTTTCTTGATGTCCTTCAGTCTGGTATACTGGGTTCAACAGATTATCCAAAAAAGTTGACGAACTGTTTCTGGTGGGGCCTGCGAAATCTTAGGTCTGTACTAATGATCAAATTCGTTCTTATTAAATTTATATATTTGATGAAAATATATGACTGCATATTCCATTGTACGTGTTTCAATTACAATCAAATGTATGCTGAATTCTTGGTTATGATATGCCTGATGATGTATATGCAGACGGATGCTGCAATATTAGAGTCGAACAGACACAAGAGGAAAGTCAAAAGGGCTGTGGAAAAGAAAGGTCGAGAGTTAGACTCGTGGTTATTGAAAAATGGCATCCCTAGTAGAAGAAAAAATGAGATGATGGAAAGGGTACAGCAAGAGCTTGCCGAAAGGAGAAATGTTGATGTGGAAAACATTCTCTCTATTCTTCCCGAGGAACTTCAGAGCTATATCAAAAATTTGTTGCCATTGGCTCGGCTAAAGAAAGTACCACTGCTTCAAACTATGGATGAAGAAGTATTGAAAGAAATCAGTGAGTATCTTGAACCCAAAAAATTTGAGATTACTGGGCGGGAATATCTTTCTAGAGATGGGGAACCACTAGAAAAGATGATATTCATAGTTGAGGGAGATCTTGGCGTTGAAAGAAGAAATGTTGCCGGTCGTGACCTTTTATACCCGGGAGACTTCTATGGAGCAGAACTTCTGGAGTGGGTATCAGTATCAAATACCTCTTTTCCCGCCACATTACCCTTATCCATAGACTCTTCTTATGTCACCAACAATGATAGTGTTCTTTTTCTCAAGGCTGACGACTTGAAGAGTGTAGTGTCTAAATTCAGGTCGCGTTTTAGCAAGGAGATCACACTTCCATCCAATTGTCCACCGGAAGTTCTATCTTCTTTCCAGCTGACTATGCTTAAGACAGTGCCAATGTTTCAAGCTATGGACGAAGCCCTGTTAAAAGCAATCTCTGAGCGTCTGAAGCCAGTGACCTACACTGATGGGATGTATATAATAAAAAAGGATGAACCACTTCAGTTGATGTTCTTCGTCCTAGCTGGATATGTAGTCACCGAAAGTTATCCTCATTATGTTGTTCGTATAGGAGAATTTTGTGGACAAGAACTTCTAGATTGGCCATCCACTACCTCATTTCCTATGGAATTTCCCACAGCACTCGAGTCTGCTAGGGCCAATGGTGATGTTAGAGTCCTTGCTCTGATGTTGGAAGACTGGGTGAGTGTTGTCAATAGATTTGAGTTTGGCAACCACAAGAGGAGAATTAAGCTGGCGGTGGAAAAGAAGAGTAAAGAGTTGGACTTGTGGTTATTTAAATCTGGTATCCCTAGTAGAAGAAAAAATGAGATAATGGAAAGGGTACGGCAAGAACTTGAAGAATATAGGGATGTTGATGTCGAGAATGTCCTCCGTATCCTCCCTGTGGAACTTCAAAGTTATATCAAAAGTTGTTTGCCAATTACTCGGTTAAAGAAAGTGCCAATGCTTAGAAGTGTCGATGAAGAAGTGTTAAGAGCAATATGTGAACATATGAAACCCATCAAGTATACAAATATTCGTGGGAGGGTATATCATTCTCGCGATGGGGAACCACTTGAAAAGATGATATTCATTGTTGAGGAGGATCTAGGTGTTGAAAGAAGAAACTCTGCTACTCGGGACCTTTTATATGAAGGAGACTTCTATGGAGAGGAACTTGTACATTGGGTATCAGTATCACATACATCTTTTCCTGCCAGATTACCCTTATCAGTCGATTCTGCTTATGTCACCAACAATGATAGCATCCTTATTCTCATGGCTGACGACTTGAAGAGTGTAGTATCTAAGTTCAGGTTGCATTTCAGCAAGGAGATAACCCTTCCACCTGATACTCAGCCAGAGCTTCTGAGATCTGTTCAGTTGACTATGCTAAAGAAAGTGCCTCGGTTTCAAACTATGGACGAAGAAATGTTGAAAGCAATCTGTGCGCATCTGAAGCCTATAACCTATACTGATGGGATGTATCCCATCAAAAAGGATGAACCACTCCAACGGATGTTCTTTGTCCTAGCCGGATATGTAGTCACCGAAAGTTATCCTCATGCTGTTGTTCGTGTAGGAGAATTCTGTGGACAAGAACTTATTGAATGGGCATCAACTATCTCCTTTCCTGCCAAATTACCCACAGCACTCGAGTCTGCTAGGGCGAATGGTGATGTTAGAGTCCTTGCCCTCATGTCTGACGATTGGATTAGTATAGTCCATAAATTTTCATCTAGCAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019538 GO:0019941 GO:0030163 GO:0032991 GO:0034657 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0071704 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

CLTH

Protein Analysis

1449

Amino Acids

166.68

Weight (kDa)

8.17

Isoelectric Point (pI)

49.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CTLH	PF10607	181 - 322	1.2e-46	CTLH/CRA C-terminal to LisH motif domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003326)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55070 AT3G55070
fragaria_vesca	FvH4_7g20680 FvH4_7g20680 FvH4_7g20680
malus_domestica	MD01G1115200.v1.1 MD01G1115600.v1.1 MD07G1183500.v1.1
prunus_persica	Prupe.2G222200_v2.0.a1 Prupe.2G222200_v2.0.a1 Prupe.2G222200_v2.0.a1
pyrus_communis	pycom01g14420 pycom07g17610
rosa_chinensis	RchiOBHm_Chr1g0364711 RchiOBHm_Chr1g0364821 RchiOBHm_Chr1g0364831
rosa_laevigata	RLG00000027464
rosa_multiflora	Rmu_co8292327.1_g000001 Rmu_sc0028465.1_g000001 Rmu_sc0028466.1_g000001 Rmu_ssc0000112.1_g000032
rosa_roxburghii	Rroxscaffold_4G00291710 Rroxscaffold_4G00291720 Rroxscaffold_4G00292120 Rroxscaffold_4G00292130 Rroxscaffold_4G00292150
rosa_rugosa	Rorug01G0318300 Rorug01G0318500
rosa_samantha	Rh1AG327100 Rh1BG288200 Rh1BG288300 Rh1CG304900 Rh1CG305000 Rh1DG319900
rosa_wichuraiana	Rw1G028970 Rw1G028980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	798, 1500
Acc16I	TGCGCA	1 cut(s)	4050
AccB1I	GGYRCC	2 cut(s)	26, 366
AccI	GTMKAC	3 cut(s)	1137, 2077, 3626
AccII	CGCG	5 cut(s)	180, 192, 249, 2905, 3660
AcoI	YGGCCR	5 cut(s)	103, 498, 1129, 1164, 3197
AcuI	CTGAAG	5 cut(s)	2051, 2483, 3062, 3080, 4076
AcyI	GRCGYC	2 cut(s)	228, 270
AfiI	CCNNNNNNNGG	6 cut(s)	47, 580, 603, 1512, 1645, 3502
AflII	CTTAAG	1 cut(s)	2978
AflIII	ACRYGT	2 cut(s)	459, 2222
AjnI	CCWGG	5 cut(s)	46, 299, 602, 858, 1152
AloI	GAACNNNNNNTCC	2 cut(s)	1352, 1384
Alw21I	GWGCWC	3 cut(s)	135, 162, 351
Alw26I	GTCTC	3 cut(s)	301, 2736, 3750
AlwNI	CAGNNNCTG	1 cut(s)	1442
Ama87I	CYCGRG	7 cut(s)	40, 128, 2489, 2737, 3239, 3735, 4253
ApeKI	GCWGC	6 cut(s)	772, 1051, 1235, 1436, 1548, 2297
Asp700I	GAANNNNTTC	3 cut(s)	2117, 2472, 3093
AspLEI	GCGC	4 cut(s)	182, 361, 435, 4051
AspS9I	GGNCC	8 cut(s)	50, 590, 1150, 1298, 1747, 2128, 3252, 3739
AsuC2I	CCSGG	3 cut(s)	371, 2738, 2739
AsuHPI	GGTGA	9 cut(s)	272, 1575, 2827, 3124, 3272, 3310, 3841, 4138, 4286
AsuNHI	GCTAGC	1 cut(s)	1024
AvaI	CYCGRG	7 cut(s)	40, 128, 2489, 2737, 3239, 3735, 4253
AvaII	GGWCC	2 cut(s)	1747, 3739
AxyI	CCTNAGG	1 cut(s)	1293
BaeI	ACNNNNGTAYC	2 cut(s)	474, 507
BalI	TGGCCA	2 cut(s)	1166, 3199
BamHI	GGATCC	3 cut(s)	444, 994, 1360
BanI	GGYRCC	2 cut(s)	26, 366
BanII	GRGCYC	1 cut(s)	47
BarI	GAAGNNNNNNTAC	2 cut(s)	2538, 2570
BauI	CACGAG	1 cut(s)	2371
BbsI	GAAGAC	4 cut(s)	176, 1438, 1779, 3297
Bbv12I	GWGCWC	3 cut(s)	135, 162, 351
BbvI	GCAGC	6 cut(s)	784, 1063, 1222, 1448, 1535, 2284
BceAI	ACGGC	8 cut(s)	40, 73, 200, 241, 257, 1116, 1144, 3458
BciT130I	CCWGG	5 cut(s)	48, 301, 604, 860, 1154
BciVI	GTATCC	3 cut(s)	3413, 3503, 4095
BclI	TGATCA	2 cut(s)	1386, 2157
BcnI	CCSGG	3 cut(s)	371, 2738, 2739
BcoDI	GTCTC	3 cut(s)	301, 2736, 3750
BfmI	CTRYAG	1 cut(s)	1138
BfrI	CTTAAG	1 cut(s)	2978
BfuI	GTATCC	3 cut(s)	3413, 3503, 4095
BglII	AGATCT	3 cut(s)	1688, 2689, 3971
BisI	GCNGC	7 cut(s)	240, 773, 1052, 1236, 1437, 1549, 2298
BlsI	GCNGC	7 cut(s)	241, 774, 1053, 1237, 1438, 1550, 2299
BmcAI	AGTACT	2 cut(s)	805, 1951
Bme1390I	CCNGG	8 cut(s)	48, 301, 371, 604, 860, 1154, 2738, 2739
Bme18I	GGWCC	2 cut(s)	1747, 3739
BmeT110I	CYCGRG	7 cut(s)	40, 128, 2489, 2737, 3239, 3735, 4253
BmgT120I	GGNCC	8 cut(s)	50, 590, 1150, 1298, 1747, 2128, 3252, 3739
BmrFI	CCNGG	8 cut(s)	48, 301, 371, 604, 860, 1154, 2738, 2739
BmrI	ACTGGG	4 cut(s)	2006, 2090, 2634, 3304
BmsI	GCATC	9 cut(s)	526, 1063, 1387, 1764, 2284, 2400, 3873, 4060, 4223
BmtI	GCTAGC	1 cut(s)	1028
BmuI	ACTGGG	4 cut(s)	2006, 2090, 2634, 3304
BpiI	GAAGAC	4 cut(s)	176, 1438, 1779, 3297
BplI	GAGNNNNNCTC	3 cut(s)	28, 2354, 2386
BpmI	CTGGAG	3 cut(s)	283, 557, 2786
BpuEI	CTTGAG	3 cut(s)	929, 1591, 2846
BpuMI	CCSGG	3 cut(s)	371, 2738, 2739
Bsa29I	ATCGAT	1 cut(s)	1617
BsaAI	YACGTR	1 cut(s)	2223
BsaHI	GRCGYC	2 cut(s)	228, 270
BsaWI	WCCGGW	1 cut(s)	2944
BsaXI	ACNNNNNCTCC	4 cut(s)	14, 44, 398, 428
Bsc4I	CCNNNNNNNGG	6 cut(s)	47, 580, 603, 1512, 1645, 3502
Bse118I	RCCGGY	1 cut(s)	2717
Bse1I	ACTGG	7 cut(s)	136, 1851, 2012, 2085, 2629, 3047, 3299
Bse21I	CCTNAGG	1 cut(s)	1293
BseBI	CCWGG	5 cut(s)	48, 301, 604, 860, 1154
BseCI	ATCGAT	1 cut(s)	1617
BseLI	CCNNNNNNNGG	6 cut(s)	47, 580, 603, 1512, 1645, 3502
BseMII	CTCAG	6 cut(s)	336, 603, 1703, 3024, 3959, 3968
BseNI	ACTGG	7 cut(s)	136, 1851, 2012, 2085, 2629, 3047, 3299
BseRI	GAGGAG	3 cut(s)	1588, 3352, 3713
BseX3I	CGGCCG	1 cut(s)	1129
BseXI	GCAGC	6 cut(s)	784, 1063, 1222, 1448, 1535, 2284
BseYI	CCCAGC	1 cut(s)	70
Bsh1236I	CGCG	5 cut(s)	180, 192, 249, 2905, 3660
Bsh1285I	CGRYCG	3 cut(s)	247, 1132, 2722
BshNI	GGYRCC	2 cut(s)	26, 366
BshVI	ATCGAT	1 cut(s)	1617
BsiEI	CGRYCG	3 cut(s)	247, 1132, 2722
BsiHKAI	GWGCWC	3 cut(s)	135, 162, 351
BsiHKCI	CYCGRG	7 cut(s)	40, 128, 2489, 2737, 3239, 3735, 4253
BsiSI	CCGG	5 cut(s)	370, 2718, 2738, 2945, 4134
BslFI	GGGAC	2 cut(s)	134, 3752
BslI	CCNNNNNNNGG	6 cut(s)	47, 580, 603, 1512, 1645, 3502
BsmAI	GTCTC	3 cut(s)	301, 2736, 3750
BsmBI	CGTCTC	1 cut(s)	301
BsmFI	GGGAC	2 cut(s)	134, 3752
BsoBI	CYCGRG	7 cut(s)	40, 128, 2489, 2737, 3239, 3735, 4253
Bsp1286I	GDGCHC	4 cut(s)	47, 135, 162, 351
Bsp1407I	TGTACA	2 cut(s)	1839, 3778
Bsp19I	CCATGG	1 cut(s)	743
Bsp68I	TCGCGA	1 cut(s)	3660
BspCNI	CTCAG	6 cut(s)	337, 604, 1704, 3025, 3960, 3967
BspDI	ATCGAT	1 cut(s)	1617
BspFNI	CGCG	5 cut(s)	180, 192, 249, 2905, 3660
BspOI	GCTAGC	1 cut(s)	1028
BspT107I	GGYRCC	2 cut(s)	26, 366
BspTI	CTTAAG	1 cut(s)	2978
BsrFI	RCCGGY	1 cut(s)	2717
BsrGI	TGTACA	2 cut(s)	1839, 3778
BsrI	ACTGG	7 cut(s)	136, 1851, 2012, 2085, 2629, 3047, 3299
BssAI	RCCGGY	1 cut(s)	2717
BssNAI	GTATAC	2 cut(s)	2078, 3627
BssNI	GRCGYC	2 cut(s)	228, 270
BssSI	CACGAG	1 cut(s)	2371
BssT1I	CCWWGG	3 cut(s)	307, 743, 987
Bst1107I	GTATAC	2 cut(s)	2078, 3627
Bst2BI	CACGAG	1 cut(s)	2371
Bst2UI	CCWGG	5 cut(s)	48, 301, 604, 860, 1154
Bst4CI	ACNGT	5 cut(s)	790, 1002, 1961, 2117, 2986
Bst6I	CTCTTC	6 cut(s)	324, 1791, 2830, 2873, 3359, 3887
BstACI	GRCGYC	2 cut(s)	228, 270
BstAFI	CTTAAG	1 cut(s)	2978
BstAPI	GCANNNNNTGC	1 cut(s)	4046
BstAUI	TGTACA	2 cut(s)	1839, 3778
BstBAI	YACGTR	1 cut(s)	2223
BstC8I	GCNNGC	6 cut(s)	498, 936, 1026, 2132, 2442, 3351
BstDSI	CCRYGG	2 cut(s)	743, 1742
BstENI	CCTNNNNNAGG	1 cut(s)	1643
BstFNI	CGCG	5 cut(s)	180, 192, 249, 2905, 3660
BstHHI	GCGC	4 cut(s)	182, 361, 435, 4051
BstMAI	GTCTC	3 cut(s)	301, 2736, 3750
BstMCI	CGRYCG	3 cut(s)	247, 1132, 2722
BstMWI	GCNNNNNNNGC	6 cut(s)	608, 1030, 2974, 3043, 4046, 4057
BstNI	CCWGG	5 cut(s)	48, 301, 604, 860, 1154
BstNSI	RCATGY	3 cut(s)	259, 463, 1919
BstSCI	CCNGG	8 cut(s)	46, 299, 369, 602, 858, 1152, 2736, 2737
BstSFI	CTRYAG	1 cut(s)	1138
BstUI	CGCG	5 cut(s)	180, 192, 249, 2905, 3660
BstV1I	GCAGC	6 cut(s)	784, 1063, 1222, 1448, 1535, 2284
BstV2I	GAAGAC	4 cut(s)	176, 1438, 1779, 3297
BstXI	CCANNNNNNTGG	1 cut(s)	849
BstZ17I	GTATAC	2 cut(s)	2078, 3627
BstZI	CGGCCG	1 cut(s)	1129
Bsu15I	ATCGAT	1 cut(s)	1617
Bsu36I	CCTNAGG	1 cut(s)	1293
BsuI	GTATCC	3 cut(s)	3413, 3503, 4095
BsuTUI	ATCGAT	1 cut(s)	1617
BtgI	CCRYGG	2 cut(s)	743, 1742
BtgZI	GCGATG	1 cut(s)	3675
BtsI	GCAGTG	1 cut(s)	2549
BtsIMutI	CAGTG	6 cut(s)	998, 2549, 2596, 2991, 3054, 3057
BtuMI	TCGCGA	1 cut(s)	3660
Cac8I	GCNNGC	6 cut(s)	498, 936, 1026, 2132, 2442, 3351
CaiI	CAGNNNCTG	1 cut(s)	1442
CfoI	GCGC	4 cut(s)	182, 361, 435, 4051
Cfr10I	RCCGGY	1 cut(s)	2717
Cfr13I	GGNCC	8 cut(s)	50, 590, 1150, 1298, 1747, 2128, 3252, 3739
Cfr9I	CCCGGG	1 cut(s)	2737
ClaI	ATCGAT	1 cut(s)	1617
CseI	GACGC	4 cut(s)	181, 217, 278, 3026
CsiI	ACCWGGT	1 cut(s)	858
CspCI	CAANNNNNGTGG	2 cut(s)	3081, 3116
DraI	TTTAAA	1 cut(s)	3394
EaeI	YGGCCR	5 cut(s)	103, 498, 1129, 1164, 3197
EagI	CGGCCG	1 cut(s)	1129
Eam1104I	CTCTTC	6 cut(s)	324, 1791, 2830, 2873, 3359, 3887
EarI	CTCTTC	6 cut(s)	324, 1791, 2830, 2873, 3359, 3887
EciI	GGCGGA	2 cut(s)	22, 202
EclXI	CGGCCG	1 cut(s)	1129
Eco130I	CCWWGG	3 cut(s)	307, 743, 987
Eco147I	AGGCCT	1 cut(s)	312
Eco24I	GRGCYC	1 cut(s)	47
Eco47I	GGWCC	2 cut(s)	1747, 3739
Eco52I	CGGCCG	1 cut(s)	1129
Eco57I	CTGAAG	5 cut(s)	2051, 2483, 3062, 3080, 4076
Eco81I	CCTNAGG	1 cut(s)	1293
Eco88I	CYCGRG	7 cut(s)	40, 128, 2489, 2737, 3239, 3735, 4253
EcoNI	CCTNNNNNAGG	1 cut(s)	1643
EcoO109I	RGGNCCY	6 cut(s)	590, 1150, 1298, 1747, 2128, 3739
EcoRI	GAATTC	3 cut(s)	881, 2252, 4184
EcoRII	CCWGG	5 cut(s)	46, 299, 602, 858, 1152
EcoT14I	CCWWGG	3 cut(s)	307, 743, 987
EcoT22I	ATGCAT	2 cut(s)	541, 1534
EcoT38I	GRGCYC	1 cut(s)	47
ErhI	CCWWGG	3 cut(s)	307, 743, 987
Esp3I	CGTCTC	1 cut(s)	301
FaqI	GGGAC	2 cut(s)	134, 3752
FauI	CCCGC	4 cut(s)	93, 768, 2622, 2806
FauNDI	CATATG	2 cut(s)	721, 3609
FbaI	TGATCA	2 cut(s)	1386, 2157
FblI	GTMKAC	3 cut(s)	1137, 2077, 3626
Fnu4HI	GCNGC	7 cut(s)	240, 773, 1052, 1236, 1437, 1549, 2298
FriOI	GRGCYC	1 cut(s)	47
Fsp4HI	GCNGC	7 cut(s)	240, 773, 1052, 1236, 1437, 1549, 2298
FspAI	RTGCGCAY	1 cut(s)	4050
FspI	TGCGCA	1 cut(s)	4050
GlaI	GCGC	4 cut(s)	181, 360, 434, 4050
GluI	GCNGC	7 cut(s)	240, 773, 1052, 1236, 1437, 1549, 2298
GsaI	CCCAGC	1 cut(s)	74
GsuI	CTGGAG	3 cut(s)	283, 557, 2786
HapII	CCGG	5 cut(s)	370, 2718, 2738, 2945, 4134
HgaI	GACGC	4 cut(s)	181, 217, 278, 3026
HhaI	GCGC	4 cut(s)	182, 361, 435, 4051
Hin1I	GRCGYC	2 cut(s)	228, 270
Hin6I	GCGC	4 cut(s)	180, 359, 433, 4049
HinP1I	GCGC	4 cut(s)	180, 359, 433, 4049
HincII	GTYRAC	4 cut(s)	232, 865, 2109, 3984
HindII	GTYRAC	4 cut(s)	232, 865, 2109, 3984
HindIII	AAGCTT	2 cut(s)	1064, 1706
HpaII	CCGG	5 cut(s)	370, 2718, 2738, 2945, 4134
HphI	GGTGA	9 cut(s)	272, 1575, 2827, 3124, 3272, 3310, 3841, 4138, 4286
Hpy99I	CGWCG	4 cut(s)	197, 254, 269, 272
HpyAV	CCTTC	9 cut(s)	163, 196, 1004, 1270, 1649, 1760, 2075, 3746, 3950
HpyCH4III	ACNGT	5 cut(s)	790, 1002, 1961, 2117, 2986
HpyCH4IV	ACGT	1 cut(s)	2222
HpyF10VI	GCNNNNNNNGC	6 cut(s)	608, 1030, 2974, 3043, 4046, 4057
HpySE526I	ACGT	1 cut(s)	2222
Hsp92I	GRCGYC	2 cut(s)	228, 270
HspAI	GCGC	4 cut(s)	180, 359, 433, 4049
Ksp22I	TGATCA	2 cut(s)	1386, 2157
LmnI	GCTCC	5 cut(s)	309, 336, 1444, 1865, 2753
Lsp1109I	GCAGC	6 cut(s)	784, 1063, 1222, 1448, 1535, 2284
LweI	GCATC	9 cut(s)	526, 1063, 1387, 1764, 2284, 2400, 3873, 4060, 4223
MabI	ACCWGGT	1 cut(s)	858
MaeII	ACGT	1 cut(s)	2222
MfeI	CAATTG	1 cut(s)	2935
MhlI	GDGCHC	4 cut(s)	47, 135, 162, 351
MlsI	TGGCCA	2 cut(s)	1166, 3199
MluNI	TGGCCA	2 cut(s)	1166, 3199
MmeI	TCCRAC	4 cut(s)	138, 3267, 3357, 4135
Mox20I	TGGCCA	2 cut(s)	1166, 3199
Mph1103I	ATGCAT	2 cut(s)	541, 1534
MroXI	GAANNNNTTC	3 cut(s)	2117, 2472, 3093
MscI	TGGCCA	2 cut(s)	1166, 3199
MslI	CAYNNNNRTG	1 cut(s)	1382
Msp20I	TGGCCA	2 cut(s)	1166, 3199
MspA1I	CMGCKG	2 cut(s)	775, 2968
MspCI	CTTAAG	1 cut(s)	2978
MspI	CCGG	5 cut(s)	370, 2718, 2738, 2945, 4134
MspR9I	CCNGG	8 cut(s)	48, 301, 371, 604, 860, 1154, 2738, 2739
MunI	CAATTG	1 cut(s)	2935
MvaI	CCWGG	5 cut(s)	48, 301, 604, 860, 1154
MvnI	CGCG	5 cut(s)	180, 192, 249, 2905, 3660
MwoI	GCNNNNNNNGC	6 cut(s)	608, 1030, 2974, 3043, 4046, 4057
NciI	CCSGG	3 cut(s)	371, 2738, 2739
NcoI	CCATGG	1 cut(s)	743
NdeI	CATATG	2 cut(s)	721, 3609
NheI	GCTAGC	1 cut(s)	1024
NmeAIII	GCCGAG	3 cut(s)	81, 223, 2512
NruI	TCGCGA	1 cut(s)	3660
NsbI	TGCGCA	1 cut(s)	4050
NsiI	ATGCAT	2 cut(s)	541, 1534
NspI	RCATGY	3 cut(s)	259, 463, 1919
PaeR7I	CTCGAG	3 cut(s)	128, 3239, 4253
PceI	AGGCCT	1 cut(s)	312
PciI	ACATGT	1 cut(s)	459
PcsI	WCGNNNNNNNCGW	2 cut(s)	231, 240
PdmI	GAANNNNTTC	3 cut(s)	2117, 2472, 3093
PfeI	GAWTC	3 cut(s)	392, 1250, 3836
PkrI	GCNGC	7 cut(s)	241, 774, 1053, 1237, 1438, 1550, 2299
Ppu21I	YACGTR	1 cut(s)	2223
PpuMI	RGGWCCY	2 cut(s)	1747, 3739
PscI	ACATGT	1 cut(s)	459
PsiI	TTATAA	2 cut(s)	798, 1500
Psp5II	RGGWCCY	2 cut(s)	1747, 3739
Psp6I	CCWGG	5 cut(s)	46, 299, 602, 858, 1152
PspFI	CCCAGC	1 cut(s)	70
PspGI	CCWGG	5 cut(s)	46, 299, 602, 858, 1152
PspPI	GGNCC	8 cut(s)	50, 590, 1150, 1298, 1747, 2128, 3252, 3739
PspPPI	RGGWCCY	2 cut(s)	1747, 3739
PspXI	VCTCGAGB	3 cut(s)	128, 3239, 4253
PsrI	GAACNNNNNNTAC	2 cut(s)	2068, 2100
PstNI	CAGNNNCTG	1 cut(s)	1442
PvuII	CAGCTG	1 cut(s)	2968
RruI	TCGCGA	1 cut(s)	3660
RseI	CAYNNNNRTG	1 cut(s)	1382
SatI	GCNGC	7 cut(s)	240, 773, 1052, 1236, 1437, 1549, 2298
Sau96I	GGNCC	8 cut(s)	50, 590, 1150, 1298, 1747, 2128, 3252, 3739
ScaI	AGTACT	2 cut(s)	805, 1951
ScrFI	CCNGG	8 cut(s)	48, 301, 371, 604, 860, 1154, 2738, 2739
SduI	GDGCHC	4 cut(s)	47, 135, 162, 351
SexAI	ACCWGGT	1 cut(s)	858
SfaNI	GCATC	9 cut(s)	526, 1063, 1387, 1764, 2284, 2400, 3873, 4060, 4223
SfcI	CTRYAG	1 cut(s)	1138
Sfr274I	CTCGAG	3 cut(s)	128, 3239, 4253
SinI	GGWCC	2 cut(s)	1747, 3739
SlaI	CTCGAG	3 cut(s)	128, 3239, 4253
SmaI	CCCGGG	1 cut(s)	2739
SmiI	ATTTAAAT	1 cut(s)	3394
SmiMI	CAYNNNNRTG	1 cut(s)	1382
SmlI	CTYRAG	7 cut(s)	128, 908, 1570, 2861, 2978, 3239, 4253
SmoI	CTYRAG	7 cut(s)	128, 908, 1570, 2861, 2978, 3239, 4253
SseBI	AGGCCT	1 cut(s)	312
SspI	AATATT	5 cut(s)	514, 925, 1483, 2304, 3634
StuI	AGGCCT	1 cut(s)	312
StyD4I	CCNGG	8 cut(s)	46, 299, 369, 602, 858, 1152, 2736, 2737
StyI	CCWWGG	3 cut(s)	307, 743, 987
SwaI	ATTTAAAT	1 cut(s)	3394
TaaI	ACNGT	5 cut(s)	790, 1002, 1961, 2117, 2986
TaiI	ACGT	1 cut(s)	2225
TaqII	GACCGA	1 cut(s)	1527
TatI	WGTACW	8 cut(s)	803, 1351, 1822, 1839, 1858, 1949, 2149, 3778
TauI	GCSGC	1 cut(s)	242
TfiI	GAWTC	3 cut(s)	392, 1250, 3836
TscAI	CASTG	6 cut(s)	1005, 2556, 2596, 2991, 3054, 3064
TseI	GCWGC	6 cut(s)	772, 1051, 1235, 1436, 1548, 2297
TspGWI	ACGGA	6 cut(s)	1007, 1115, 1475, 2306, 3479, 4129
TspMI	CCCGGG	1 cut(s)	2737
TspRI	CASTG	6 cut(s)	1005, 2556, 2596, 2991, 3054, 3064
Vha464I	CTTAAG	1 cut(s)	2978
VpaK11BI	GGWCC	2 cut(s)	1747, 3739
XagI	CCTNNNNNAGG	1 cut(s)	1643
XbaI	TCTAGA	2 cut(s)	2642, 3190
XceI	RCATGY	3 cut(s)	259, 463, 1919
XcmI	CCANNNNNNNNNTGG	1 cut(s)	646
XhoI	CTCGAG	3 cut(s)	128, 3239, 4253
XmaI	CCCGGG	1 cut(s)	2737
XmiI	GTMKAC	3 cut(s)	1137, 2077, 3626
XmnI	GAANNNNTTC	3 cut(s)	2117, 2472, 3093
ZrmI	AGTACT	2 cut(s)	805, 1951
Zsp2I	ATGCAT	2 cut(s)	541, 1534

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.