Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0028466.1

Orthogroup ID

OG0003326

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1596

Gene Structure 1596 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0028466.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ctgaatgacttatgcccagtagatccaccaaatgcaaagctgtttgattttggtatctttcttgatgtccttcagtctggtatactgggttcaacagattatccaaaaaagttgacgaactgtttctggtggggcctgcgaaatcttagttctcttggttcaaatctccagaccagtaccaatacatgggaaaacctctttgcgactctaatttctattatcggcttgctactttttctatatcttattggaaatttgcagatgtatatgcagacggatgctgcaatattagagtcgaacagacacaagaggaaagtcaaaagggctgtggaaaagaaaggtcgagagttagacttgtggttattgaaaaatggcatccctagtggaaaaaaaaatgagatgatggaaagggtacagcaagagcttgccgaaaggagaaatgttgatgtggaaaacattctctctattcttcccgaggaacttcagagctatatcaaaaatttgttgccattggctcggctaaagaaagtaccactgcttcaaactatggatgaagaagtattgaaagaaatcagtgagtatcttgaacccaaaaaatttgagattactgggcgggaatatctttctagagatggggaaccactagaaaagatgatattcatagttgagggagatcttggcgttgaaagaagaaatgttgccggtcgtgaccttttatacccgggagacttctatggagcagaacttctggagtgg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans Pkinase Pkinase_Tyr cNMP_binding

Protein Analysis

252

Amino Acids

29.01

Weight (kDa)

5.24

Isoelectric Point (pI)

47.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003326)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55070 AT3G55070
fragaria_vesca	FvH4_7g20680 FvH4_7g20680 FvH4_7g20680
malus_domestica	MD01G1115200.v1.1 MD01G1115600.v1.1 MD07G1183500.v1.1
prunus_persica	Prupe.2G222200_v2.0.a1 Prupe.2G222200_v2.0.a1 Prupe.2G222200_v2.0.a1
pyrus_communis	pycom01g14420 pycom07g17610
rosa_chinensis	RchiOBHm_Chr1g0364711 RchiOBHm_Chr1g0364821 RchiOBHm_Chr1g0364831
rosa_laevigata	RLG00000027464
rosa_multiflora	Rmu_co8292327.1_g000001 Rmu_sc0028465.1_g000001 Rmu_sc0028466.1_g000001 Rmu_ssc0000112.1_g000032
rosa_roxburghii	Rroxscaffold_4G00291710 Rroxscaffold_4G00291720 Rroxscaffold_4G00292120 Rroxscaffold_4G00292130 Rroxscaffold_4G00292150
rosa_rugosa	Rorug01G0318300 Rorug01G0318500
rosa_samantha	Rh1AG327100 Rh1BG288200 Rh1BG288300 Rh1CG304900 Rh1CG305000 Rh1DG319900
rosa_wichuraiana	Rw1G028970 Rw1G028980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	186
AccI	GTMKAC	1 cut(s)	82
AciI	CCGC	1 cut(s)	613
AclWI	GGATC	1 cut(s)	17
AcsI	RAATTY	3 cut(s)	253, 499, 596
AcuI	CTGAAG	2 cut(s)	56, 467
AfaI	GTAC	3 cut(s)	178, 414, 531
AfiI	CCNNNNNNNGG	1 cut(s)	186
AgsI	TTSAA	7 cut(s)	93, 162, 367, 542, 565, 587, 686
AluBI	AGCT	3 cut(s)	40, 424, 489
AluI	AGCT	3 cut(s)	40, 424, 489
Alw26I	GTCTC	1 cut(s)	720
AlwI	GGATC	1 cut(s)	17
Ama87I	CYCGRG	2 cut(s)	473, 721
AoxI	GGCC	1 cut(s)	133
ApeKI	GCWGC	1 cut(s)	281
ApoI	RAATTY	3 cut(s)	253, 499, 596
Asp700I	GAANNNNTTC	2 cut(s)	122, 456
AspS9I	GGNCC	1 cut(s)	133
AsuC2I	CCSGG	2 cut(s)	722, 723
AvaI	CYCGRG	2 cut(s)	473, 721
BarI	GAAGNNNNNNTAC	2 cut(s)	522, 554
BbvI	GCAGC	1 cut(s)	268
BccI	CCATC	2 cut(s)	397, 626
BcnI	CCSGG	2 cut(s)	722, 723
BcoDI	GTCTC	1 cut(s)	720
BfaI	CTAG	3 cut(s)	381, 627, 644
BglII	AGATCT	1 cut(s)	673
BisI	GCNGC	1 cut(s)	282
BlsI	GCNGC	1 cut(s)	283
Bme1390I	CCNGG	2 cut(s)	722, 723
BmeT110I	CYCGRG	2 cut(s)	473, 721
BmgT120I	GGNCC	1 cut(s)	133
BmiI	GGNNCC	2 cut(s)	134, 639
BmrFI	CCNGG	2 cut(s)	722, 723
BmrI	ACTGGG	3 cut(s)	11, 95, 618
BmsI	GCATC	2 cut(s)	268, 384
BmuI	ACTGGG	3 cut(s)	11, 95, 618
BpmI	CTGGAG	1 cut(s)	152
BpuMI	CCSGG	2 cut(s)	722, 723
BsaJI	CCNNGG	2 cut(s)	474, 721
Bsc4I	CCNNNNNNNGG	1 cut(s)	186
Bse118I	RCCGGY	1 cut(s)	701
Bse1I	ACTGG	4 cut(s)	17, 90, 174, 613
BseDI	CCNNGG	2 cut(s)	474, 721
BseGI	GGATG	3 cut(s)	283, 375, 556
BseLI	CCNNNNNNNGG	1 cut(s)	186
BseNI	ACTGG	4 cut(s)	17, 90, 174, 613
BseXI	GCAGC	1 cut(s)	268
Bsh1285I	CGRYCG	1 cut(s)	706
BshFI	GGCC	1 cut(s)	135
BsiEI	CGRYCG	1 cut(s)	706
BsiHKCI	CYCGRG	2 cut(s)	473, 721
BsiSI	CCGG	2 cut(s)	702, 722
BslI	CCNNNNNNNGG	1 cut(s)	186
BsmAI	GTCTC	1 cut(s)	720
BsnI	GGCC	1 cut(s)	135
BsoBI	CYCGRG	2 cut(s)	473, 721
Bsp143I	GATC	2 cut(s)	22, 673
BspACI	CCGC	1 cut(s)	613
BspANI	GGCC	1 cut(s)	135
BspLI	GGNNCC	2 cut(s)	134, 639
BspPI	GGATC	1 cut(s)	17
BsrFI	RCCGGY	1 cut(s)	701
BsrI	ACTGG	4 cut(s)	17, 90, 174, 613
BssAI	RCCGGY	1 cut(s)	701
BssECI	CCNNGG	2 cut(s)	474, 721
BssMI	GATC	2 cut(s)	22, 673
BssNAI	GTATAC	1 cut(s)	83
Bst1107I	GTATAC	1 cut(s)	83
Bst4CI	ACNGT	1 cut(s)	122
BstC8I	GCNNGC	3 cut(s)	137, 227, 426
BstDEI	CTNAG	1 cut(s)	146
BstF5I	GGATG	3 cut(s)	283, 375, 556
BstKTI	GATC	2 cut(s)	25, 676
BstMAI	GTCTC	1 cut(s)	720
BstMBI	GATC	2 cut(s)	22, 673
BstMCI	CGRYCG	1 cut(s)	706
BstSCI	CCNGG	2 cut(s)	720, 721
BstV1I	GCAGC	1 cut(s)	268
BstX2I	RGATCY	2 cut(s)	22, 673
BstYI	RGATCY	2 cut(s)	22, 673
BstZ17I	GTATAC	1 cut(s)	83
BsuRI	GGCC	1 cut(s)	135
BtsCI	GGATG	3 cut(s)	283, 375, 556
BtsI	GCAGTG	1 cut(s)	533
BtsIMutI	CAGTG	2 cut(s)	533, 580
Cac8I	GCNNGC	3 cut(s)	137, 227, 426
Cfr10I	RCCGGY	1 cut(s)	701
Cfr13I	GGNCC	1 cut(s)	133
Cfr9I	CCCGGG	1 cut(s)	721
Csp6I	GTAC	3 cut(s)	177, 413, 530
CviAII	CATG	1 cut(s)	186
CviJI	RGCY	8 cut(s)	40, 135, 225, 326, 424, 489, 515, 520
CviKI_1	RGCY	8 cut(s)	40, 135, 225, 326, 424, 489, 515, 520
CviQI	GTAC	3 cut(s)	177, 413, 530
DdeI	CTNAG	1 cut(s)	146
DpnI	GATC	2 cut(s)	24, 675
DpnII	GATC	2 cut(s)	22, 673
Eco57I	CTGAAG	2 cut(s)	56, 467
Eco88I	CYCGRG	2 cut(s)	473, 721
EcoO109I	RGGNCCY	1 cut(s)	133
FaeI	CATG	1 cut(s)	189
FatI	CATG	1 cut(s)	185
FauI	CCCGC	1 cut(s)	606
FblI	GTMKAC	1 cut(s)	82
Fnu4HI	GCNGC	1 cut(s)	282
FokI	GGATG	3 cut(s)	290, 362, 563
Fsp4HI	GCNGC	1 cut(s)	282
FspBI	CTAG	3 cut(s)	381, 627, 644
GluI	GCNGC	1 cut(s)	282
GsuI	CTGGAG	1 cut(s)	152
HaeIII	GGCC	1 cut(s)	135
HapII	CCGG	2 cut(s)	702, 722
Hin1II	CATG	1 cut(s)	189
HincII	GTYRAC	1 cut(s)	114
HindII	GTYRAC	1 cut(s)	114
HinfI	GANTC	2 cut(s)	205, 293
HpaII	CCGG	2 cut(s)	702, 722
Hpy166II	GTNNAC	2 cut(s)	83, 114
Hpy188I	TCNGA	1 cut(s)	486
Hpy188III	TCNNGA	8 cut(s)	62, 169, 344, 473, 584, 627, 707, 749
Hpy8I	GTNNAC	2 cut(s)	83, 114
HpyAV	CCTTC	1 cut(s)	80
HpyCH4III	ACNGT	1 cut(s)	122
HpyCH4V	TGCA	4 cut(s)	35, 259, 271, 284
HpyF3I	CTNAG	1 cut(s)	146
Hsp92II	CATG	1 cut(s)	189
Kzo9I	GATC	2 cut(s)	22, 673
LmnI	GCTCC	1 cut(s)	737
Lsp1109I	GCAGC	1 cut(s)	268
LweI	GCATC	2 cut(s)	268, 384
MaeI	CTAG	3 cut(s)	381, 627, 644
MaeIII	GTNAC	1 cut(s)	707
MalI	GATC	2 cut(s)	24, 675
MboI	GATC	2 cut(s)	22, 673
MboII	GAAGA	3 cut(s)	461, 566, 702
MflI	RGATCY	2 cut(s)	22, 673
MluCI	AATT	4 cut(s)	210, 253, 499, 596
MlyI	GAGTC	2 cut(s)	199, 302
MnlI	CCTC	4 cut(s)	206, 303, 469, 661
MroXI	GAANNNNTTC	2 cut(s)	122, 456
MspI	CCGG	2 cut(s)	702, 722
MspR9I	CCNGG	2 cut(s)	722, 723
NciI	CCSGG	2 cut(s)	722, 723
NdeII	GATC	2 cut(s)	22, 673
NlaIII	CATG	1 cut(s)	189
NlaIV	GGNNCC	2 cut(s)	134, 639
NmeAIII	GCCGAG	1 cut(s)	496
NmuCI	GTSAC	1 cut(s)	707
PdmI	GAANNNNTTC	2 cut(s)	122, 456
PflMI	CCANNNNNTGG	1 cut(s)	186
PkrI	GCNGC	1 cut(s)	283
PleI	GAGTC	2 cut(s)	199, 301
PpsI	GAGTC	2 cut(s)	199, 301
PspN4I	GGNNCC	2 cut(s)	134, 639
PspPI	GGNCC	1 cut(s)	133
PsrI	GAACNNNNNNTAC	2 cut(s)	73, 105
PsuI	RGATCY	2 cut(s)	22, 673
RsaI	GTAC	3 cut(s)	178, 414, 531
RsaNI	GTAC	3 cut(s)	177, 413, 530
SatI	GCNGC	1 cut(s)	282
Sau3AI	GATC	2 cut(s)	22, 673
Sau96I	GGNCC	1 cut(s)	133
SchI	GAGTC	2 cut(s)	199, 302
ScrFI	CCNGG	2 cut(s)	722, 723
SetI	ASST	6 cut(s)	42, 198, 343, 426, 491, 714
SfaNI	GCATC	2 cut(s)	268, 384
SmaI	CCCGGG	1 cut(s)	723
Sse9I	AATT	4 cut(s)	210, 253, 499, 596
SsiI	CCGC	1 cut(s)	613
SspI	AATATT	1 cut(s)	288
SspMI	CTAG	3 cut(s)	381, 627, 644
StyD4I	CCNGG	2 cut(s)	720, 721
TaaI	ACNGT	1 cut(s)	122
TaqI	TCGA	2 cut(s)	296, 343
TasI	AATT	4 cut(s)	210, 253, 499, 596
TscAI	CASTG	2 cut(s)	540, 580
TseFI	GTSAC	1 cut(s)	707
TseI	GCWGC	1 cut(s)	281
Tsp45I	GTSAC	1 cut(s)	707
TspDTI	ATGAA	2 cut(s)	567, 649
TspGWI	ACGGA	1 cut(s)	290
TspMI	CCCGGG	1 cut(s)	721
TspRI	CASTG	2 cut(s)	540, 580
Van91I	CCANNNNNTGG	1 cut(s)	186
XapI	RAATTY	3 cut(s)	253, 499, 596
XbaI	TCTAGA	1 cut(s)	626
XmaI	CCCGGG	1 cut(s)	721
XmiI	GTMKAC	1 cut(s)	82
XmnI	GAANNNNTTC	2 cut(s)	122, 456
XspI	CTAG	3 cut(s)	381, 627, 644

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.