Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0003326

Physical Location & Seq

Genomic Coordinates Forward (+)

42380823 .. 42384156

Gene Structure 3334 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG288200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1251 bp

ATGGAGATGGACTCCCTCCCCAACGGCACCTCCGCCTCCCCTAGCCCAGGCCCAAGCCCAAGCCCAAGCCCAGCCACCGCACCCCCGCCGTCCTTGAAGCTCGGCCACCTCTCCGACTCCTTGAAGCTCGAGCACCAGTTCCTCCGAGTCCCCTTCGAGCACTACAAGAAGACGATCCGCGCCAACCACCGCGTCGCCGAGAAGGAGATGTCCGCCGTCATCAACGGCGTCAACGAAGCCGCCGACCGCGACGACATGCTGTGCGACGACGCCGTCAGTCATCTCAATTCCCTCGTCTCCAGGCTCCAAGGCCTCAAACGAAAGCTGGAAGAGGGGAGCAAGACTGAGCACTTACAGGCGCAGAGGTGCCGGGCGAGGCTGGATCATTTAGAATCAGCAGATGTGGAGAATTTGTCAGAATGGAACAATGTGCGCTTGAACCGGATCCTTGTGGACTATATGTTGAGAATGTCTTATTATGATACCGCGGTGAAGCTGGCCGAAAGCCAAAATATTCAGGATCTTGTTGATATCGATGTATTTCAAGAAGCCAGAAAGGTTATTGAAGCTCTCCAGAATAAGGAGGTAGGCCCTGCCCTAGCCTGGTGTGCTGAGAACAAGTCAAGGTTAAAGAAATCCAAGAGCAAATTGGAGTTTCAGCTAAGACTTCAAGAGTTTATAGAGTTGGTACGAGCTGAAAATAACTTACGAGCTATCACATATGCCCAGAAATACCTTGCACCATGGGGTACTACCTATATGAAAGAATTGCAGCGGGTCTTTGTAACAGTAGCTTATAAGAGTACTACCGAATGTGGTACATACAAGGTTTTATTTGAACCAAAACAATGGGATTACCTGGTTGACCAATTCAAACAGGAATTCTGCAAGTTATATGGCATGACACTTGAGCCTCTGCTGAATATTTATCTGCAAGCAGGACTCTCTGCTCTGAAAACTCCATATTGTTATGAAGATGATTGCACCAAGGAGGATCCACTGTCACAGGAAGGTTTCCGTAAGCTAGCCCTGCCATTACCTTATTCTAAGCAGCATCACTCAAAGCTTGTTTGCTACATAACTAAGGAACTGATGGACACGGAAAATCCGCCACAAGTTCTGCCAAACGGCCGTGTCTACAGCACTAAGGCCCTGGAAGAAATGGCCAAGAAGAATGATGGGAAAATTACTTGTCCGAGGACAGGTGAGGTCTACAACTACACAGATCTGGTGAAGGCATATATATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019538 GO:0019941 GO:0030163 GO:0032991 GO:0034657 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0071704 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

CLTH

Protein Analysis

416

Amino Acids

47.5

Weight (kDa)

6.77

Isoelectric Point (pI)

48.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CTLH	PF10607	180 - 322	9.8e-48	CTLH/CRA C-terminal to LisH motif domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003326)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55070 AT3G55070
fragaria_vesca	FvH4_7g20680 FvH4_7g20680 FvH4_7g20680
malus_domestica	MD01G1115200.v1.1 MD01G1115600.v1.1 MD07G1183500.v1.1
prunus_persica	Prupe.2G222200_v2.0.a1 Prupe.2G222200_v2.0.a1 Prupe.2G222200_v2.0.a1
pyrus_communis	pycom01g14420 pycom07g17610
rosa_chinensis	RchiOBHm_Chr1g0364711 RchiOBHm_Chr1g0364821 RchiOBHm_Chr1g0364831
rosa_laevigata	RLG00000027464
rosa_multiflora	Rmu_co8292327.1_g000001 Rmu_sc0028465.1_g000001 Rmu_sc0028466.1_g000001 Rmu_ssc0000112.1_g000032
rosa_roxburghii	Rroxscaffold_4G00291710 Rroxscaffold_4G00291720 Rroxscaffold_4G00292120 Rroxscaffold_4G00292130 Rroxscaffold_4G00292150
rosa_rugosa	Rorug01G0318300 Rorug01G0318500
rosa_samantha	Rh1AG327100 Rh1BG288200 Rh1BG288300 Rh1CG304900 Rh1CG305000 Rh1DG319900
rosa_wichuraiana	Rw1G028970 Rw1G028980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	798
AasI	GACNNNNNNGTC	1 cut(s)	272
AccB1I	GGYRCC	2 cut(s)	26, 366
AccI	GTMKAC	2 cut(s)	1137, 1212
AccII	CGCG	4 cut(s)	180, 192, 249, 488
AclWI	GGATC	7 cut(s)	169, 390, 439, 452, 528, 989, 1002
AcoI	YGGCCR	4 cut(s)	103, 498, 1129, 1164
AcsI	RAATTY	2 cut(s)	409, 881
AcyI	GRCGYC	2 cut(s)	228, 270
AfaI	GTAC	4 cut(s)	690, 751, 805, 820
AfiI	CCNNNNNNNGG	4 cut(s)	47, 580, 603, 1202
AgsI	TTSAA	8 cut(s)	97, 124, 439, 545, 566, 671, 839, 874
AjnI	CCWGG	5 cut(s)	46, 299, 602, 858, 1152
Alw21I	GWGCWC	3 cut(s)	135, 162, 351
Alw26I	GTCTC	1 cut(s)	301
AlwI	GGATC	7 cut(s)	169, 390, 439, 452, 528, 989, 1002
Ama87I	CYCGRG	1 cut(s)	128
AoxI	GGCC	8 cut(s)	49, 103, 310, 498, 589, 1129, 1149, 1164
ApeKI	GCWGC	2 cut(s)	772, 1051
ApoI	RAATTY	2 cut(s)	409, 881
AspLEI	GCGC	3 cut(s)	182, 361, 435
AspS9I	GGNCC	3 cut(s)	50, 590, 1150
AsuC2I	CCSGG	1 cut(s)	371
AsuHPI	GGTGA	3 cut(s)	502, 1217, 1243
AsuNHI	GCTAGC	1 cut(s)	1024
AvaI	CYCGRG	1 cut(s)	128
BaeI	ACNNNNGTAYC	2 cut(s)	474, 507
BalI	TGGCCA	1 cut(s)	1166
BamHI	GGATCC	2 cut(s)	444, 994
BanI	GGYRCC	2 cut(s)	26, 366
BbsI	GAAGAC	1 cut(s)	176
Bbv12I	GWGCWC	3 cut(s)	135, 162, 351
BbvI	GCAGC	2 cut(s)	784, 1063
BccI	CCATC	2 cut(s)	1087, 1172
BceAI	ACGGC	7 cut(s)	40, 73, 200, 241, 257, 1116, 1144
BciT130I	CCWGG	5 cut(s)	48, 301, 604, 860, 1154
BcnI	CCSGG	1 cut(s)	371
BcoDI	GTCTC	1 cut(s)	301
BfaI	CTAG	3 cut(s)	42, 599, 1025
BfmI	CTRYAG	1 cut(s)	1138
BglII	AGATCT	1 cut(s)	1225
BisI	GCNGC	3 cut(s)	240, 773, 1052
BlsI	GCNGC	3 cut(s)	241, 774, 1053
BmcAI	AGTACT	1 cut(s)	805
Bme1390I	CCNGG	6 cut(s)	48, 301, 371, 604, 860, 1154
BmeT110I	CYCGRG	1 cut(s)	128
BmgT120I	GGNCC	3 cut(s)	50, 590, 1150
BmiI	GGNNCC	5 cut(s)	28, 305, 368, 446, 996
BmrFI	CCNGG	6 cut(s)	48, 301, 371, 604, 860, 1154
BmsI	GCATC	1 cut(s)	1063
BmtI	GCTAGC	1 cut(s)	1028
BpiI	GAAGAC	1 cut(s)	176
BplI	GAGNNNNNCTC	1 cut(s)	28
BpmI	CTGGAG	2 cut(s)	283, 557
BpuEI	CTTGAG	1 cut(s)	929
BpuMI	CCSGG	1 cut(s)	371
Bsa29I	ATCGAT	1 cut(s)	534
BsaHI	GRCGYC	2 cut(s)	228, 270
BsaJI	CCNNGG	7 cut(s)	46, 307, 486, 743, 987, 1152, 1196
BsaWI	WCCGGW	1 cut(s)	441
BsaXI	ACNNNNNCTCC	4 cut(s)	14, 44, 398, 428
Bsc4I	CCNNNNNNNGG	4 cut(s)	47, 580, 603, 1202
Bse1I	ACTGG	1 cut(s)	136
BseBI	CCWGG	5 cut(s)	48, 301, 604, 860, 1154
BseCI	ATCGAT	1 cut(s)	534
BseDI	CCNNGG	7 cut(s)	46, 307, 486, 743, 987, 1152, 1196
BseLI	CCNNNNNNNGG	4 cut(s)	47, 580, 603, 1202
BseMII	CTCAG	2 cut(s)	336, 603
BseNI	ACTGG	1 cut(s)	136
BseX3I	CGGCCG	1 cut(s)	1129
BseXI	GCAGC	2 cut(s)	784, 1063
BseYI	CCCAGC	1 cut(s)	70
Bsh1236I	CGCG	4 cut(s)	180, 192, 249, 488
Bsh1285I	CGRYCG	2 cut(s)	247, 1132
BshFI	GGCC	8 cut(s)	51, 105, 312, 500, 591, 1131, 1151, 1166
BshNI	GGYRCC	2 cut(s)	26, 366
BshVI	ATCGAT	1 cut(s)	534
BsiEI	CGRYCG	2 cut(s)	247, 1132
BsiHKAI	GWGCWC	3 cut(s)	135, 162, 351
BsiHKCI	CYCGRG	1 cut(s)	128
BsiSI	CCGG	2 cut(s)	370, 442
BslFI	GGGAC	1 cut(s)	134
BslI	CCNNNNNNNGG	4 cut(s)	47, 580, 603, 1202
BsmAI	GTCTC	1 cut(s)	301
BsmBI	CGTCTC	1 cut(s)	301
BsmFI	GGGAC	1 cut(s)	134
BsnI	GGCC	8 cut(s)	51, 105, 312, 500, 591, 1131, 1151, 1166
BsoBI	CYCGRG	1 cut(s)	128
Bsp1286I	GDGCHC	3 cut(s)	135, 162, 351
Bsp143I	GATC	6 cut(s)	174, 382, 444, 520, 994, 1225
Bsp19I	CCATGG	1 cut(s)	743
BspANI	GGCC	8 cut(s)	51, 105, 312, 500, 591, 1131, 1151, 1166
BspCNI	CTCAG	2 cut(s)	337, 604
BspDI	ATCGAT	1 cut(s)	534
BspFNI	CGCG	4 cut(s)	180, 192, 249, 488
BspHI	TCATGA	1 cut(s)	1247
BspLI	GGNNCC	5 cut(s)	28, 305, 368, 446, 996
BspOI	GCTAGC	1 cut(s)	1028
BspPI	GGATC	7 cut(s)	169, 390, 439, 452, 528, 989, 1002
BspT107I	GGYRCC	2 cut(s)	26, 366
BsrI	ACTGG	1 cut(s)	136
BssECI	CCNNGG	7 cut(s)	46, 307, 486, 743, 987, 1152, 1196
BssMI	GATC	6 cut(s)	174, 382, 444, 520, 994, 1225
BssNI	GRCGYC	2 cut(s)	228, 270
BssT1I	CCWWGG	3 cut(s)	307, 743, 987
Bst2UI	CCWGG	5 cut(s)	48, 301, 604, 860, 1154
Bst4CI	ACNGT	2 cut(s)	790, 1002
Bst6I	CTCTTC	1 cut(s)	324
BstACI	GRCGYC	2 cut(s)	228, 270
BstC8I	GCNNGC	3 cut(s)	498, 936, 1026
BstDEI	CTNAG	6 cut(s)	345, 612, 662, 1047, 1083, 1146
BstDSI	CCRYGG	2 cut(s)	486, 743
BstENI	CCTNNNNNAGG	1 cut(s)	45
BstFNI	CGCG	4 cut(s)	180, 192, 249, 488
BstHHI	GCGC	3 cut(s)	182, 361, 435
BstKTI	GATC	6 cut(s)	177, 385, 447, 523, 997, 1228
BstMAI	GTCTC	1 cut(s)	301
BstMBI	GATC	6 cut(s)	174, 382, 444, 520, 994, 1225
BstMCI	CGRYCG	2 cut(s)	247, 1132
BstMWI	GCNNNNNNNGC	2 cut(s)	608, 1030
BstNI	CCWGG	5 cut(s)	48, 301, 604, 860, 1154
BstNSI	RCATGY	1 cut(s)	259
BstSCI	CCNGG	6 cut(s)	46, 299, 369, 602, 858, 1152
BstSFI	CTRYAG	1 cut(s)	1138
BstUI	CGCG	4 cut(s)	180, 192, 249, 488
BstV1I	GCAGC	2 cut(s)	784, 1063
BstV2I	GAAGAC	1 cut(s)	176
BstX2I	RGATCY	4 cut(s)	444, 520, 994, 1225
BstXI	CCANNNNNNTGG	1 cut(s)	849
BstYI	RGATCY	4 cut(s)	444, 520, 994, 1225
BstZI	CGGCCG	1 cut(s)	1129
Bsu15I	ATCGAT	1 cut(s)	534
BsuRI	GGCC	8 cut(s)	51, 105, 312, 500, 591, 1131, 1151, 1166
BsuTUI	ATCGAT	1 cut(s)	534
BtgI	CCRYGG	2 cut(s)	486, 743
BtsIMutI	CAGTG	1 cut(s)	998
Cac8I	GCNNGC	3 cut(s)	498, 936, 1026
CciI	TCATGA	1 cut(s)	1247
CfoI	GCGC	3 cut(s)	182, 361, 435
Cfr13I	GGNCC	3 cut(s)	50, 590, 1150
Cfr42I	CCGCGG	1 cut(s)	489
ClaI	ATCGAT	1 cut(s)	534
CseI	GACGC	3 cut(s)	181, 217, 278
CsiI	ACCWGGT	1 cut(s)	858
Csp6I	GTAC	4 cut(s)	689, 750, 804, 819
CviAII	CATG	4 cut(s)	256, 744, 901, 1248
CviQI	GTAC	4 cut(s)	689, 750, 804, 819
DdeI	CTNAG	6 cut(s)	345, 612, 662, 1047, 1083, 1146
DpnI	GATC	6 cut(s)	176, 384, 446, 522, 996, 1227
DpnII	GATC	6 cut(s)	174, 382, 444, 520, 994, 1225
DrdI	GACNNNNNNGTC	1 cut(s)	272
DseDI	GACNNNNNNGTC	1 cut(s)	272
EaeI	YGGCCR	4 cut(s)	103, 498, 1129, 1164
EagI	CGGCCG	1 cut(s)	1129
Eam1104I	CTCTTC	1 cut(s)	324
EarI	CTCTTC	1 cut(s)	324
EciI	GGCGGA	3 cut(s)	22, 202, 1098
EclXI	CGGCCG	1 cut(s)	1129
Eco130I	CCWWGG	3 cut(s)	307, 743, 987
Eco147I	AGGCCT	1 cut(s)	312
Eco32I	GATATC	1 cut(s)	532
Eco52I	CGGCCG	1 cut(s)	1129
Eco88I	CYCGRG	1 cut(s)	128
EcoNI	CCTNNNNNAGG	1 cut(s)	45
EcoO109I	RGGNCCY	2 cut(s)	590, 1150
EcoRI	GAATTC	1 cut(s)	881
EcoRII	CCWGG	5 cut(s)	46, 299, 602, 858, 1152
EcoRV	GATATC	1 cut(s)	532
EcoT14I	CCWWGG	3 cut(s)	307, 743, 987
ErhI	CCWWGG	3 cut(s)	307, 743, 987
Esp3I	CGTCTC	1 cut(s)	301
FaeI	CATG	4 cut(s)	259, 747, 904, 1251
FaqI	GGGAC	1 cut(s)	134
FatI	CATG	4 cut(s)	255, 743, 900, 1247
FauI	CCCGC	2 cut(s)	93, 768
FauNDI	CATATG	1 cut(s)	721
FblI	GTMKAC	2 cut(s)	1137, 1212
Fnu4HI	GCNGC	3 cut(s)	240, 773, 1052
Fsp4HI	GCNGC	3 cut(s)	240, 773, 1052
FspBI	CTAG	3 cut(s)	42, 599, 1025
GlaI	GCGC	3 cut(s)	181, 360, 434
GluI	GCNGC	3 cut(s)	240, 773, 1052
GsaI	CCCAGC	1 cut(s)	74
GsuI	CTGGAG	2 cut(s)	283, 557
HaeIII	GGCC	8 cut(s)	51, 105, 312, 500, 591, 1131, 1151, 1166
HapII	CCGG	2 cut(s)	370, 442
HgaI	GACGC	3 cut(s)	181, 217, 278
HhaI	GCGC	3 cut(s)	182, 361, 435
Hin1I	GRCGYC	2 cut(s)	228, 270
Hin1II	CATG	4 cut(s)	259, 747, 904, 1251
Hin6I	GCGC	3 cut(s)	180, 359, 433
HinP1I	GCGC	3 cut(s)	180, 359, 433
HincII	GTYRAC	2 cut(s)	232, 865
HindII	GTYRAC	2 cut(s)	232, 865
HindIII	AAGCTT	1 cut(s)	1064
HinfI	GANTC	5 cut(s)	11, 116, 147, 392, 942
HpaII	CCGG	2 cut(s)	370, 442
HphI	GGTGA	3 cut(s)	502, 1217, 1243
Hpy166II	GTNNAC	5 cut(s)	232, 454, 865, 1138, 1213
Hpy188I	TCNGA	5 cut(s)	115, 146, 418, 954, 1197
Hpy188III	TCNNGA	5 cut(s)	518, 545, 574, 671, 1248
Hpy8I	GTNNAC	5 cut(s)	232, 454, 865, 1138, 1213
Hpy99I	CGWCG	4 cut(s)	197, 254, 269, 272
HpyAV	CCTTC	4 cut(s)	163, 196, 1004, 1228
HpyCH4III	ACNGT	2 cut(s)	790, 1002
HpyCH4V	TGCA	5 cut(s)	740, 772, 888, 934, 984
HpyF10VI	GCNNNNNNNGC	2 cut(s)	608, 1030
HpyF3I	CTNAG	6 cut(s)	345, 612, 662, 1047, 1083, 1146
Hsp92I	GRCGYC	2 cut(s)	228, 270
Hsp92II	CATG	4 cut(s)	259, 747, 904, 1251
HspAI	GCGC	3 cut(s)	180, 359, 433
KspI	CCGCGG	1 cut(s)	489
Kzo9I	GATC	6 cut(s)	174, 382, 444, 520, 994, 1225
LmnI	GCTCC	2 cut(s)	309, 336
Lsp1109I	GCAGC	2 cut(s)	784, 1063
LweI	GCATC	1 cut(s)	1063
MabI	ACCWGGT	1 cut(s)	858
MaeI	CTAG	3 cut(s)	42, 599, 1025
MaeIII	GTNAC	2 cut(s)	784, 1002
MalI	GATC	6 cut(s)	176, 384, 446, 522, 996, 1227
MboI	GATC	6 cut(s)	174, 382, 444, 520, 994, 1225
MboII	GAAGA	5 cut(s)	181, 341, 986, 1169, 1183
MflI	RGATCY	4 cut(s)	444, 520, 994, 1225
MhlI	GDGCHC	3 cut(s)	135, 162, 351
MlsI	TGGCCA	1 cut(s)	1166
MluCI	AATT	7 cut(s)	286, 409, 647, 767, 869, 881, 1185
MluNI	TGGCCA	1 cut(s)	1166
MlyI	GAGTC	4 cut(s)	5, 110, 156, 936
MmeI	TCCRAC	1 cut(s)	138
Mox20I	TGGCCA	1 cut(s)	1166
MscI	TGGCCA	1 cut(s)	1166
MseI	TTAA	1 cut(s)	629
Msp20I	TGGCCA	1 cut(s)	1166
MspA1I	CMGCKG	2 cut(s)	488, 775
MspI	CCGG	2 cut(s)	370, 442
MspR9I	CCNGG	6 cut(s)	48, 301, 371, 604, 860, 1154
MvaI	CCWGG	5 cut(s)	48, 301, 604, 860, 1154
MvnI	CGCG	4 cut(s)	180, 192, 249, 488
MwoI	GCNNNNNNNGC	2 cut(s)	608, 1030
NciI	CCSGG	1 cut(s)	371
NcoI	CCATGG	1 cut(s)	743
NdeI	CATATG	1 cut(s)	721
NdeII	GATC	6 cut(s)	174, 382, 444, 520, 994, 1225
NheI	GCTAGC	1 cut(s)	1024
NlaIII	CATG	4 cut(s)	259, 747, 904, 1251
NlaIV	GGNNCC	5 cut(s)	28, 305, 368, 446, 996
NmeAIII	GCCGAG	2 cut(s)	81, 223
NmuCI	GTSAC	1 cut(s)	1002
NspI	RCATGY	1 cut(s)	259
PaeR7I	CTCGAG	1 cut(s)	128
PagI	TCATGA	1 cut(s)	1247
PceI	AGGCCT	1 cut(s)	312
PcsI	WCGNNNNNNNCGW	2 cut(s)	231, 240
PfeI	GAWTC	1 cut(s)	392
PflFI	GACNNNGTC	1 cut(s)	272
PkrI	GCNGC	3 cut(s)	241, 774, 1053
PleI	GAGTC	4 cut(s)	5, 110, 155, 936
PpsI	GAGTC	4 cut(s)	5, 110, 155, 936
PsiI	TTATAA	1 cut(s)	798
Psp6I	CCWGG	5 cut(s)	46, 299, 602, 858, 1152
PspFI	CCCAGC	1 cut(s)	70
PspGI	CCWGG	5 cut(s)	46, 299, 602, 858, 1152
PspN4I	GGNNCC	5 cut(s)	28, 305, 368, 446, 996
PspPI	GGNCC	3 cut(s)	50, 590, 1150
PspXI	VCTCGAGB	1 cut(s)	128
PsuI	RGATCY	4 cut(s)	444, 520, 994, 1225
PsyI	GACNNNGTC	1 cut(s)	272
RsaI	GTAC	4 cut(s)	690, 751, 805, 820
RsaNI	GTAC	4 cut(s)	689, 750, 804, 819
SacII	CCGCGG	1 cut(s)	489
SaqAI	TTAA	1 cut(s)	629
SatI	GCNGC	3 cut(s)	240, 773, 1052
Sau3AI	GATC	6 cut(s)	174, 382, 444, 520, 994, 1225
Sau96I	GGNCC	3 cut(s)	50, 590, 1150
ScaI	AGTACT	1 cut(s)	805
SchI	GAGTC	4 cut(s)	5, 110, 156, 936
ScrFI	CCNGG	6 cut(s)	48, 301, 371, 604, 860, 1154
SduI	GDGCHC	3 cut(s)	135, 162, 351
SexAI	ACCWGGT	1 cut(s)	858
SfaNI	GCATC	1 cut(s)	1063
SfcI	CTRYAG	1 cut(s)	1138
Sfr274I	CTCGAG	1 cut(s)	128
Sfr303I	CCGCGG	1 cut(s)	489
SgrBI	CCGCGG	1 cut(s)	489
SlaI	CTCGAG	1 cut(s)	128
SmlI	CTYRAG	2 cut(s)	128, 908
SmoI	CTYRAG	2 cut(s)	128, 908
Sse9I	AATT	7 cut(s)	286, 409, 647, 767, 869, 881, 1185
SseBI	AGGCCT	1 cut(s)	312
SspI	AATATT	2 cut(s)	514, 925
SspMI	CTAG	3 cut(s)	42, 599, 1025
StuI	AGGCCT	1 cut(s)	312
StyD4I	CCNGG	6 cut(s)	46, 299, 369, 602, 858, 1152
StyI	CCWWGG	3 cut(s)	307, 743, 987
TaaI	ACNGT	2 cut(s)	790, 1002
TaqI	TCGA	3 cut(s)	129, 156, 534
TasI	AATT	7 cut(s)	286, 409, 647, 767, 869, 881, 1185
TatI	WGTACW	1 cut(s)	803
TauI	GCSGC	1 cut(s)	242
TfiI	GAWTC	1 cut(s)	392
Tru1I	TTAA	1 cut(s)	629
Tru9I	TTAA	1 cut(s)	629
TscAI	CASTG	1 cut(s)	1005
TseFI	GTSAC	1 cut(s)	1002
TseI	GCWGC	2 cut(s)	772, 1051
Tsp45I	GTSAC	1 cut(s)	1002
TspDTI	ATGAA	2 cut(s)	776, 987
TspGWI	ACGGA	2 cut(s)	1007, 1115
TspRI	CASTG	1 cut(s)	1005
Tth111I	GACNNNGTC	1 cut(s)	272
XagI	CCTNNNNNAGG	1 cut(s)	45
XapI	RAATTY	2 cut(s)	409, 881
XceI	RCATGY	1 cut(s)	259
XcmI	CCANNNNNNNNNTGG	1 cut(s)	646
XhoI	CTCGAG	1 cut(s)	128
XmiI	GTMKAC	2 cut(s)	1137, 1212
XspI	CTAG	3 cut(s)	42, 599, 1025
ZrmI	AGTACT	1 cut(s)	805

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.