Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0003326

Physical Location & Seq

Genomic Coordinates Reverse (-)

12527796 .. 12529277

Gene Structure 1482 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00292130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGATGGAAAGGGTACAGCAAGAGCTTGCCGAAAGGAGAAATGTTGATGTGGAAAACATTCTCTCTATTCTTCCCGAGGAACTTCAGAGCTCTATCAAAAATTTGTTGCCATTGGCTCGGCTAAAGAAAGTACCACTGCTTCAAACTATGGATGAAGAAGTATTGAAAGAAATCAGTGAGTATCTTGAACCCAAAAAATTTGAGATTACTGGGCGGGAATATCTTTCTAGAGATGGGGAACCACTAGAAAAGATGATATTCATAGTTGAGGGAGATCTTGGCGTTGAAAGAAGAAATGTTGCCGGTCGTGACCTTTTATACCCGGGAGACTTCTATGGAGCAGAACTTCTGGAGTGGGTATCAGTATCAAATACCTCTTTTCCCGCCACATTACCCCTATCCATAGATTCTTCTTATGTCACCAACAATGATAGTGTTCTTTTTCTCAAGGCTGACGACTTGAAGAGTGTAGTATCTAAATTCAGGTCGCGTTTTAGCAAGGAGATTACACTTCCATCCAATTTTCAACCGGAAGTTCTGACTTCTTTTCCAGCTGACTACGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans Pkinase Pkinase_Tyr cNMP_binding

Protein Analysis

188

Amino Acids

21.45

Weight (kDa)

4.68

Isoelectric Point (pI)

55.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003326)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55070 AT3G55070
fragaria_vesca	FvH4_7g20680 FvH4_7g20680 FvH4_7g20680
malus_domestica	MD01G1115200.v1.1 MD01G1115600.v1.1 MD07G1183500.v1.1
prunus_persica	Prupe.2G222200_v2.0.a1 Prupe.2G222200_v2.0.a1 Prupe.2G222200_v2.0.a1
pyrus_communis	pycom01g14420 pycom07g17610
rosa_chinensis	RchiOBHm_Chr1g0364711 RchiOBHm_Chr1g0364821 RchiOBHm_Chr1g0364831
rosa_laevigata	RLG00000027464
rosa_multiflora	Rmu_co8292327.1_g000001 Rmu_sc0028465.1_g000001 Rmu_sc0028466.1_g000001 Rmu_ssc0000112.1_g000032
rosa_roxburghii	Rroxscaffold_4G00291710 Rroxscaffold_4G00291720 Rroxscaffold_4G00292120 Rroxscaffold_4G00292130 Rroxscaffold_4G00292150
rosa_rugosa	Rorug01G0318300 Rorug01G0318500
rosa_samantha	Rh1AG327100 Rh1BG288200 Rh1BG288300 Rh1CG304900 Rh1CG305000 Rh1DG319900
rosa_wichuraiana	Rw1G028970 Rw1G028980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	490
AciI	CCGC	2 cut(s)	214, 384
AcsI	RAATTY	3 cut(s)	100, 197, 479
AcuI	CTGAAG	1 cut(s)	68
AfaI	GTAC	2 cut(s)	15, 132
AgsI	TTSAA	6 cut(s)	143, 166, 188, 287, 463, 527
AluBI	AGCT	3 cut(s)	25, 90, 554
AluI	AGCT	3 cut(s)	25, 90, 554
Alw21I	GWGCWC	1 cut(s)	92
Alw26I	GTCTC	1 cut(s)	321
Ama87I	CYCGRG	2 cut(s)	74, 322
ApoI	RAATTY	3 cut(s)	100, 197, 479
Asp700I	GAANNNNTTC	1 cut(s)	57
AsuC2I	CCSGG	2 cut(s)	323, 324
AsuHPI	GGTGA	1 cut(s)	412
AvaI	CYCGRG	2 cut(s)	74, 322
BanII	GRGCYC	1 cut(s)	92
BarI	GAAGNNNNNNTAC	2 cut(s)	123, 155
Bbv12I	GWGCWC	1 cut(s)	92
BccI	CCATC	2 cut(s)	227, 523
BcnI	CCSGG	2 cut(s)	323, 324
BcoDI	GTCTC	1 cut(s)	321
BfaI	CTAG	2 cut(s)	228, 245
BglII	AGATCT	1 cut(s)	274
Bme1390I	CCNGG	2 cut(s)	323, 324
BmeT110I	CYCGRG	2 cut(s)	74, 322
BmiI	GGNNCC	1 cut(s)	240
BmrFI	CCNGG	2 cut(s)	323, 324
BmrI	ACTGGG	1 cut(s)	219
BmuI	ACTGGG	1 cut(s)	219
BpmI	CTGGAG	1 cut(s)	371
BpuEI	CTTGAG	1 cut(s)	431
BpuMI	CCSGG	2 cut(s)	323, 324
BsaJI	CCNNGG	2 cut(s)	75, 322
BsaWI	WCCGGW	1 cut(s)	529
Bse118I	RCCGGY	1 cut(s)	302
Bse1I	ACTGG	1 cut(s)	214
BseDI	CCNNGG	2 cut(s)	75, 322
BseGI	GGATG	2 cut(s)	157, 515
BseNI	ACTGG	1 cut(s)	214
Bsh1236I	CGCG	1 cut(s)	490
Bsh1285I	CGRYCG	1 cut(s)	307
BsiEI	CGRYCG	1 cut(s)	307
BsiHKAI	GWGCWC	1 cut(s)	92
BsiHKCI	CYCGRG	2 cut(s)	74, 322
BsiSI	CCGG	3 cut(s)	303, 323, 530
BsmAI	GTCTC	1 cut(s)	321
BsoBI	CYCGRG	2 cut(s)	74, 322
Bsp1286I	GDGCHC	1 cut(s)	92
Bsp143I	GATC	1 cut(s)	274
BspACI	CCGC	2 cut(s)	214, 384
BspFNI	CGCG	1 cut(s)	490
BspLI	GGNNCC	1 cut(s)	240
BsrFI	RCCGGY	1 cut(s)	302
BsrI	ACTGG	1 cut(s)	214
BssAI	RCCGGY	1 cut(s)	302
BssECI	CCNNGG	2 cut(s)	75, 322
BssMI	GATC	1 cut(s)	274
Bst6I	CTCTTC	1 cut(s)	458
BstC8I	GCNNGC	1 cut(s)	27
BstF5I	GGATG	2 cut(s)	157, 515
BstFNI	CGCG	1 cut(s)	490
BstKTI	GATC	1 cut(s)	277
BstMAI	GTCTC	1 cut(s)	321
BstMBI	GATC	1 cut(s)	274
BstMCI	CGRYCG	1 cut(s)	307
BstMWI	GCNNNNNNNGC	1 cut(s)	560
BstSCI	CCNGG	2 cut(s)	321, 322
BstUI	CGCG	1 cut(s)	490
BstX2I	RGATCY	1 cut(s)	274
BstYI	RGATCY	1 cut(s)	274
BtsCI	GGATG	2 cut(s)	157, 515
BtsI	GCAGTG	1 cut(s)	134
BtsIMutI	CAGTG	2 cut(s)	134, 181
Cac8I	GCNNGC	1 cut(s)	27
Cfr10I	RCCGGY	1 cut(s)	302
Cfr9I	CCCGGG	1 cut(s)	322
Csp6I	GTAC	2 cut(s)	14, 131
CviJI	RGCY	6 cut(s)	25, 90, 116, 121, 452, 554
CviKI_1	RGCY	6 cut(s)	25, 90, 116, 121, 452, 554
CviQI	GTAC	2 cut(s)	14, 131
DpnI	GATC	1 cut(s)	276
DpnII	GATC	1 cut(s)	274
Eam1104I	CTCTTC	1 cut(s)	458
EarI	CTCTTC	1 cut(s)	458
Ecl136II	GAGCTC	1 cut(s)	90
Eco24I	GRGCYC	1 cut(s)	92
Eco53kI	GAGCTC	1 cut(s)	90
Eco57I	CTGAAG	1 cut(s)	68
Eco88I	CYCGRG	2 cut(s)	74, 322
EcoICRI	GAGCTC	1 cut(s)	90
EcoT38I	GRGCYC	1 cut(s)	92
FaiI	YATR	6 cut(s)	149, 263, 319, 336, 404, 417
FauI	CCCGC	2 cut(s)	207, 391
FokI	GGATG	2 cut(s)	164, 502
FriOI	GRGCYC	1 cut(s)	92
FspBI	CTAG	2 cut(s)	228, 245
GsuI	CTGGAG	1 cut(s)	371
HapII	CCGG	3 cut(s)	303, 323, 530
HinfI	GANTC	1 cut(s)	407
HpaII	CCGG	3 cut(s)	303, 323, 530
HphI	GGTGA	1 cut(s)	412
Hpy188I	TCNGA	2 cut(s)	87, 540
Hpy188III	TCNNGA	5 cut(s)	74, 185, 228, 308, 350
HpyF10VI	GCNNNNNNNGC	1 cut(s)	560
Kzo9I	GATC	1 cut(s)	274
LmnI	GCTCC	1 cut(s)	338
LpnPI	CCDG	6 cut(s)	195, 316, 335, 336, 469, 543
MaeI	CTAG	2 cut(s)	228, 245
MaeIII	GTNAC	2 cut(s)	308, 418
MalI	GATC	1 cut(s)	276
MboI	GATC	1 cut(s)	274
MboII	GAAGA	5 cut(s)	62, 167, 303, 402, 475
MflI	RGATCY	1 cut(s)	274
MhlI	GDGCHC	1 cut(s)	92
MluCI	AATT	4 cut(s)	100, 197, 479, 520
MnlI	CCTC	3 cut(s)	70, 262, 385
MroXI	GAANNNNTTC	1 cut(s)	57
MseI	TTAA	1 cut(s)	565
MspA1I	CMGCKG	1 cut(s)	554
MspI	CCGG	3 cut(s)	303, 323, 530
MspR9I	CCNGG	2 cut(s)	323, 324
MvnI	CGCG	1 cut(s)	490
MwoI	GCNNNNNNNGC	1 cut(s)	560
NciI	CCSGG	2 cut(s)	323, 324
NdeII	GATC	1 cut(s)	274
NlaIV	GGNNCC	1 cut(s)	240
NmeAIII	GCCGAG	1 cut(s)	97
NmuCI	GTSAC	2 cut(s)	308, 418
PdmI	GAANNNNTTC	1 cut(s)	57
PfeI	GAWTC	1 cut(s)	407
Psp124BI	GAGCTC	1 cut(s)	92
PspN4I	GGNNCC	1 cut(s)	240
PsuI	RGATCY	1 cut(s)	274
PvuII	CAGCTG	1 cut(s)	554
RsaI	GTAC	2 cut(s)	15, 132
RsaNI	GTAC	2 cut(s)	14, 131
SacI	GAGCTC	1 cut(s)	92
SaqAI	TTAA	1 cut(s)	565
Sau3AI	GATC	1 cut(s)	274
ScrFI	CCNGG	2 cut(s)	323, 324
SduI	GDGCHC	1 cut(s)	92
SetI	ASST	6 cut(s)	27, 92, 315, 377, 488, 556
SmaI	CCCGGG	1 cut(s)	324
SmlI	CTYRAG	1 cut(s)	446
SmoI	CTYRAG	1 cut(s)	446
Sse9I	AATT	4 cut(s)	100, 197, 479, 520
SsiI	CCGC	2 cut(s)	214, 384
SspMI	CTAG	2 cut(s)	228, 245
SstI	GAGCTC	1 cut(s)	92
StyD4I	CCNGG	2 cut(s)	321, 322
TasI	AATT	4 cut(s)	100, 197, 479, 520
TfiI	GAWTC	1 cut(s)	407
Tru1I	TTAA	1 cut(s)	565
Tru9I	TTAA	1 cut(s)	565
TscAI	CASTG	2 cut(s)	141, 181
TseFI	GTSAC	2 cut(s)	308, 418
Tsp45I	GTSAC	2 cut(s)	308, 418
TspDTI	ATGAA	2 cut(s)	168, 250
TspMI	CCCGGG	1 cut(s)	322
TspRI	CASTG	2 cut(s)	141, 181
XapI	RAATTY	3 cut(s)	100, 197, 479
XbaI	TCTAGA	1 cut(s)	227
XmaI	CCCGGG	1 cut(s)	322
XmnI	GAANNNNTTC	1 cut(s)	57
XspI	CTAG	2 cut(s)	228, 245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.