Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8292327.1

Orthogroup ID

OG0003326

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 873

Gene Structure 873 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8292327.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

gttttagcaaggagatcacacttccatccaattttcaaccggaagttctgacttctttccagctgactaggcttaagacagtgccaatgtttcaagctacggacgaagccctgttaaaagcaatctctgagcgtctgaagccagtgacctacactgatgggatgtatataatcaaaaaggatgaaccacttcagttgatgttcttcgtcctagccggatatgtagtcaccgaaagttatcctcattttgttgttcgtataggagaattttgtggacaagaacttctagattggccatccactacctcatttcctatggaatttcccacagcactcgagtctgctagggccaatggtgatgttagagtccttgctctgatgttggaagactgggtgagtgtagtcaatagatttgagtttggcaaacacaagaggagaattaagctggcggtggaaaagaagagtaaagagttagacttgtggttatttaaatctggtatccctagtagaagaaaaaatgagataatggaaagggtacggcaagaacttgaagaatatagggatgttgatgtcgagaatgtcctccctatccttcctgtggaacttcaaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans Pkinase Pkinase_Tyr cNMP_binding

Protein Analysis

202

Amino Acids

23.49

Weight (kDa)

5.61

Isoelectric Point (pI)

40.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003326)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55070 AT3G55070
fragaria_vesca	FvH4_7g20680 FvH4_7g20680 FvH4_7g20680
malus_domestica	MD01G1115200.v1.1 MD01G1115600.v1.1 MD07G1183500.v1.1
prunus_persica	Prupe.2G222200_v2.0.a1 Prupe.2G222200_v2.0.a1 Prupe.2G222200_v2.0.a1
pyrus_communis	pycom01g14420 pycom07g17610
rosa_chinensis	RchiOBHm_Chr1g0364711 RchiOBHm_Chr1g0364821 RchiOBHm_Chr1g0364831
rosa_laevigata	RLG00000027464
rosa_multiflora	Rmu_co8292327.1_g000001 Rmu_sc0028465.1_g000001 Rmu_sc0028466.1_g000001 Rmu_ssc0000112.1_g000032
rosa_roxburghii	Rroxscaffold_4G00291710 Rroxscaffold_4G00291720 Rroxscaffold_4G00292120 Rroxscaffold_4G00292130 Rroxscaffold_4G00292150
rosa_rugosa	Rorug01G0318300 Rorug01G0318500
rosa_samantha	Rh1AG327100 Rh1BG288200 Rh1BG288300 Rh1CG304900 Rh1CG305000 Rh1DG319900
rosa_wichuraiana	Rw1G028970 Rw1G028980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	448
AcoI	YGGCCR	1 cut(s)	292
AcsI	RAATTY	2 cut(s)	265, 319
AcuI	CTGAAG	2 cut(s)	157, 175
AfaI	GTAC	1 cut(s)	536
AfiI	CCNNNNNNNGG	1 cut(s)	597
AflII	CTTAAG	1 cut(s)	73
AgsI	TTSAA	4 cut(s)	37, 94, 550, 607
AluBI	AGCT	3 cut(s)	63, 97, 444
AluI	AGCT	3 cut(s)	63, 97, 444
Ama87I	CYCGRG	1 cut(s)	334
AoxI	GGCC	2 cut(s)	292, 347
ApoI	RAATTY	2 cut(s)	265, 319
Asp700I	GAANNNNTTC	1 cut(s)	188
AspS9I	GGNCC	1 cut(s)	347
AsuHPI	GGTGA	3 cut(s)	219, 367, 405
AvaI	CYCGRG	1 cut(s)	334
BalI	TGGCCA	1 cut(s)	294
BbsI	GAAGAC	1 cut(s)	392
BccI	CCATC	3 cut(s)	33, 151, 303
BceAI	ACGGC	1 cut(s)	553
BciVI	GTATCC	1 cut(s)	508
BfaI	CTAG	5 cut(s)	68, 211, 286, 344, 503
BfrI	CTTAAG	1 cut(s)	73
BfuI	GTATCC	1 cut(s)	508
BmeT110I	CYCGRG	1 cut(s)	334
BmgT120I	GGNCC	1 cut(s)	347
BmrI	ACTGGG	1 cut(s)	399
BmuI	ACTGGG	1 cut(s)	399
BpiI	GAAGAC	1 cut(s)	392
BsaWI	WCCGGW	1 cut(s)	39
Bsc4I	CCNNNNNNNGG	1 cut(s)	597
Bse1I	ACTGG	2 cut(s)	142, 394
BseGI	GGATG	5 cut(s)	25, 167, 186, 295, 567
BseLI	CCNNNNNNNGG	1 cut(s)	597
BseMII	CTCAG	1 cut(s)	119
BseNI	ACTGG	2 cut(s)	142, 394
BseRI	GAGGAG	1 cut(s)	447
BshFI	GGCC	2 cut(s)	294, 349
BsiHKCI	CYCGRG	1 cut(s)	334
BsiSI	CCGG	2 cut(s)	40, 215
BslI	CCNNNNNNNGG	1 cut(s)	597
BsnI	GGCC	2 cut(s)	294, 349
BsoBI	CYCGRG	1 cut(s)	334
Bsp143I	GATC	1 cut(s)	14
BspACI	CCGC	1 cut(s)	448
BspANI	GGCC	2 cut(s)	294, 349
BspCNI	CTCAG	1 cut(s)	120
BspTI	CTTAAG	1 cut(s)	73
BsrI	ACTGG	2 cut(s)	142, 394
BssMI	GATC	1 cut(s)	14
Bst4CI	ACNGT	1 cut(s)	81
Bst6I	CTCTTC	1 cut(s)	454
BstAFI	CTTAAG	1 cut(s)	73
BstC8I	GCNNGC	1 cut(s)	446
BstDEI	CTNAG	1 cut(s)	128
BstF5I	GGATG	5 cut(s)	25, 167, 186, 295, 567
BstKTI	GATC	1 cut(s)	17
BstMBI	GATC	1 cut(s)	14
BstMWI	GCNNNNNNNGC	2 cut(s)	69, 138
BstV2I	GAAGAC	1 cut(s)	392
BsuI	GTATCC	1 cut(s)	508
BsuRI	GGCC	2 cut(s)	294, 349
BtsCI	GGATG	5 cut(s)	25, 167, 186, 295, 567
BtsIMutI	CAGTG	3 cut(s)	86, 149, 152
Cac8I	GCNNGC	1 cut(s)	446
Cfr13I	GGNCC	1 cut(s)	347
CseI	GACGC	1 cut(s)	121
Csp6I	GTAC	1 cut(s)	535
CspCI	CAANNNNNGTGG	2 cut(s)	176, 211
CviJI	RGCY	9 cut(s)	63, 72, 97, 109, 141, 214, 294, 349, 444
CviKI_1	RGCY	9 cut(s)	63, 72, 97, 109, 141, 214, 294, 349, 444
CviQI	GTAC	1 cut(s)	535
DdeI	CTNAG	1 cut(s)	128
DpnI	GATC	1 cut(s)	16
DpnII	GATC	1 cut(s)	14
DraI	TTTAAA	1 cut(s)	489
EaeI	YGGCCR	1 cut(s)	292
Eam1104I	CTCTTC	1 cut(s)	454
EarI	CTCTTC	1 cut(s)	454
Eco57I	CTGAAG	2 cut(s)	157, 175
Eco88I	CYCGRG	1 cut(s)	334
FaiI	YATR	6 cut(s)	167, 169, 221, 259, 316, 557
FokI	GGATG	5 cut(s)	12, 174, 193, 282, 574
FspBI	CTAG	5 cut(s)	68, 211, 286, 344, 503
HaeIII	GGCC	2 cut(s)	294, 349
HapII	CCGG	2 cut(s)	40, 215
HgaI	GACGC	1 cut(s)	121
HinfI	GANTC	2 cut(s)	337, 365
HpaII	CCGG	2 cut(s)	40, 215
HphI	GGTGA	3 cut(s)	219, 367, 405
Hpy166II	GTNNAC	1 cut(s)	274
Hpy188I	TCNGA	4 cut(s)	50, 129, 137, 377
Hpy188III	TCNNGA	2 cut(s)	286, 573
Hpy8I	GTNNAC	1 cut(s)	274
HpyAV	CCTTC	1 cut(s)	601
HpyCH4III	ACNGT	1 cut(s)	81
HpyF10VI	GCNNNNNNNGC	2 cut(s)	69, 138
HpyF3I	CTNAG	1 cut(s)	128
Kzo9I	GATC	1 cut(s)	14
LpnPI	CCDG	8 cut(s)	53, 73, 124, 155, 228, 375, 430, 479
MaeI	CTAG	5 cut(s)	68, 211, 286, 344, 503
MaeIII	GTNAC	2 cut(s)	144, 225
MalI	GATC	1 cut(s)	16
MboI	GATC	1 cut(s)	14
MboII	GAAGA	5 cut(s)	195, 397, 471, 521, 562
MlsI	TGGCCA	1 cut(s)	294
MluCI	AATT	4 cut(s)	30, 265, 319, 437
MluNI	TGGCCA	1 cut(s)	294
MlyI	GAGTC	2 cut(s)	346, 374
MmeI	TCCRAC	1 cut(s)	362
MnlI	CCTC	4 cut(s)	251, 315, 425, 592
Mox20I	TGGCCA	1 cut(s)	294
MroXI	GAANNNNTTC	1 cut(s)	188
MscI	TGGCCA	1 cut(s)	294
MseI	TTAA	4 cut(s)	74, 115, 440, 488
Msp20I	TGGCCA	1 cut(s)	294
MspA1I	CMGCKG	1 cut(s)	63
MspCI	CTTAAG	1 cut(s)	73
MspI	CCGG	2 cut(s)	40, 215
MwoI	GCNNNNNNNGC	2 cut(s)	69, 138
NdeII	GATC	1 cut(s)	14
NmuCI	GTSAC	2 cut(s)	144, 225
PaeR7I	CTCGAG	1 cut(s)	334
PdmI	GAANNNNTTC	1 cut(s)	188
PleI	GAGTC	2 cut(s)	345, 373
PpsI	GAGTC	2 cut(s)	345, 373
PspPI	GGNCC	1 cut(s)	347
PspXI	VCTCGAGB	1 cut(s)	334
PvuII	CAGCTG	1 cut(s)	63
RsaI	GTAC	1 cut(s)	536
RsaNI	GTAC	1 cut(s)	535
SaqAI	TTAA	4 cut(s)	74, 115, 440, 488
Sau3AI	GATC	1 cut(s)	14
Sau96I	GGNCC	1 cut(s)	347
SchI	GAGTC	2 cut(s)	346, 374
SetI	ASST	5 cut(s)	65, 99, 151, 307, 446
Sfr274I	CTCGAG	1 cut(s)	334
SlaI	CTCGAG	1 cut(s)	334
SmiI	ATTTAAAT	1 cut(s)	489
SmlI	CTYRAG	2 cut(s)	73, 334
SmoI	CTYRAG	2 cut(s)	73, 334
Sse9I	AATT	4 cut(s)	30, 265, 319, 437
SsiI	CCGC	1 cut(s)	448
SspMI	CTAG	5 cut(s)	68, 211, 286, 344, 503
SwaI	ATTTAAAT	1 cut(s)	489
TaaI	ACNGT	1 cut(s)	81
TaqI	TCGA	2 cut(s)	335, 572
TasI	AATT	4 cut(s)	30, 265, 319, 437
Tru1I	TTAA	4 cut(s)	74, 115, 440, 488
Tru9I	TTAA	4 cut(s)	74, 115, 440, 488
TscAI	CASTG	3 cut(s)	86, 149, 159
TseFI	GTSAC	2 cut(s)	144, 225
Tsp45I	GTSAC	2 cut(s)	144, 225
TspDTI	ATGAA	1 cut(s)	197
TspGWI	ACGGA	1 cut(s)	115
TspRI	CASTG	3 cut(s)	86, 149, 159
Vha464I	CTTAAG	1 cut(s)	73
XapI	RAATTY	2 cut(s)	265, 319
XbaI	TCTAGA	1 cut(s)	285
XhoI	CTCGAG	1 cut(s)	334
XmnI	GAANNNNTTC	1 cut(s)	188
XspI	CTAG	5 cut(s)	68, 211, 286, 344, 503

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.