Rroxscaffold_4G00291710

Cyclic nucleotide-gated ion channel 1-like

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Reverse (-)
12108147 .. 12113904
5758 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00291710.1

Sequence Viewer

Length: 1932 bp
ATGATGGAAAGGGTACAGCAAGAGCTTGCCGAAAGGAGAAATGTTGATGTGGAAAACATTCTCTCTATTCTTCCCGAGGAACTTCAGAGCTCTATCAAAAATTTGTTGCCATTGGCTCGGCTAAAGAAAGTACCACTGCTTCAAACTATGGATGAAGAAGTATTGAAAGAAATCAGTGAGTATCTTGAACCCAAAAAATTTGAGATTACTGGGCGGGAATATCTTTCTAGAGATGGGGAACCACTAGAAAAGATGATATTCATAGTTGAGGGAGATCTTGGCGTTGAAAGAAGAAATGTTGCCGGTCGTGACCTTTTATACCCGGGAGACTTCTATGGAGCAGAACTTCTGGAGTGGGTATCAGTATCAAATACCTCTTTTCCCGCCACATTACCCCTATCCATAGATTCTTCTTATGTCACCAACAATGATAGTGTTCTTTTTCTCAAGGCTGACGACTTGAAGAGTGTAGTATCTAAATTCAGGTCGCGTTTTAGCAAGGAGATTACACTTCCATCCAATTTTCAACCGGAAGTTCTGACTTCTTTCCAGCTGACTACGCTTAAGACAGTGCCAATGTTTCAAGCTACGGACGAAGCCCTGTTAAAAGCAATCTCTGAGCGTCTGAAGCCAGTGACCTACACTGATGGGATGTATATAATCAAAAAGGATGAACCACTTCAGTTGATGTTCTTCGTCCTAGCCGGATATGTAGTCACCGAAAGTTATCCTCATTTTGTTGTTCGTATAGGAGAATTTTGTGGACAAGAACTTCTAGATTGGCCATCCACTACCTCATTTCCTATGGAATTTCCCACAGCACTCGAGTCTGCTAGGGCCAATGGTGATGTTAGAGTCCTTGCTCTGATGTTGGAAGACTGGGTGAGTGTAGTCAATAGATTTGAGTTTGGCAAACACAAGAGGAGAATTAAGCTGGCGGTGGAAAAGAAGAGTAAAGAGTTAGACTTGTGGTTATTTAAATCTGGTATCCCTAGTAGAAGAAAAAATGAGATAATGGAAAGGGTACGGCAAGAACTTGAAGAATATAGGGATGTTGATGTCGAGAATGTCCTCCCTATCCTTCCTGTGGAACTTCAAAGTTATATCAAAAGTTGTTTGCCAATTACTCGGTTAAAGAAAGTGCCAATGCTTATAAGTGTCGATGAAGAAGTGTTAAGAGCAATATGTGAACATATGAAACCCATCAAGTATACAAATATTCGTGGGAGGGTATATCATTCTCGCGATGGGGAACCACTTGAAAAGATGATATTCATTGTTGAGGGGGATCTAGGTGTTGAAAGAAGAAACTCTGCTACTCGGGACCTTTTATATGAAGGAGACTTCTATGGAGAGGAACTTGTACATTGGGTATCAGTATCACATACATCTTTTCCTGCCAGATTACCCTTATCAGTCGATTCTGCTTATGTCACCAACAATGATAGCATCCTTATTCTCATGGCTGACGACTTGAAGAGTGTAGTATCCAAGTTCAGGTTGCACTTCAGCAAGGAGATAACCCTTCCACCTGATACTCAGCCAGAGCTTCTGAGATCTGTTCAGTTGACTATGCTAAAGAAAGTGCCTCGGTTTCAAACTATGGACGAAGAAATGTTGAAAGCAATCTGTGCGCATCTGAAGCCTATAACCTATACTGATGGGATGTATATCATCAAAAAGGATGAACCACTCCAACTGATGTTCTTTGTCCTAGCCGGATATGTAGTCACCGAAAGTTATCCTCACGCTGTTGTTCATGTAGGAGAATTCTGTGGACAAGAACTTCTTGAATGGGCATCAACTATCTCCTTTCCTGCCAAATTACCCACAGCACTCGAGTCTGCTAGGGCCAATGGTGATGTTAGAGTCCTTGCCCTCACGTCTGACGATTGGATTAGTGTAGTCCATAAATTTTCATCTAGCAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

643

Amino Acids

73.57

Weight (kDa)

5.36

Isoelectric Point (pI)

41.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1154
Acc16I TGCGCA 1 cut(s) 1635
AccI GTMKAC 1 cut(s) 1211
AccII CGCG 2 cut(s) 490, 1245
AciI CCGC 3 cut(s) 214, 384, 938
AclWI GGATC 1 cut(s) 1296
AcoI YGGCCR 1 cut(s) 782
AcsI RAATTY 7 cut(s) 100, 197, 479, 755, 809, 1769, 1913
AcuI CTGAAG 5 cut(s) 68, 647, 665, 1492, 1661
AfaI GTAC 4 cut(s) 15, 132, 1026, 1365
AfiI CCNNNNNNNGG 2 cut(s) 1087, 1497
AflII CTTAAG 1 cut(s) 563
AjiI CACGTC 1 cut(s) 1884
AluBI AGCT 6 cut(s) 25, 90, 553, 587, 934, 1549
AluI AGCT 6 cut(s) 25, 90, 553, 587, 934, 1549
Alw21I GWGCWC 1 cut(s) 92
Alw26I GTCTC 2 cut(s) 321, 1335
AlwI GGATC 1 cut(s) 1296
Ama87I CYCGRG 5 cut(s) 74, 322, 824, 1320, 1838
AoxI GGCC 3 cut(s) 782, 837, 1851
ApoI RAATTY 7 cut(s) 100, 197, 479, 755, 809, 1769, 1913
Asp700I GAANNNNTTC 2 cut(s) 57, 678
AspLEI GCGC 1 cut(s) 1636
AspS9I GGNCC 3 cut(s) 837, 1324, 1851
AsuC2I CCSGG 2 cut(s) 323, 324
AsuHPI GGTGA 7 cut(s) 412, 709, 857, 895, 1426, 1723, 1871
AvaI CYCGRG 5 cut(s) 74, 322, 824, 1320, 1838
AvaII GGWCC 1 cut(s) 1324
BalI TGGCCA 1 cut(s) 784
BanII GRGCYC 1 cut(s) 92
BarI GAAGNNNNNNTAC 2 cut(s) 123, 155
BbsI GAAGAC 1 cut(s) 882
Bbv12I GWGCWC 1 cut(s) 92
BccI CCATC 7 cut(s) 227, 523, 641, 793, 1211, 1241, 1655
BceAI ACGGC 1 cut(s) 1043
BciVI GTATCC 2 cut(s) 998, 1498
BcnI CCSGG 2 cut(s) 323, 324
BcoDI GTCTC 2 cut(s) 321, 1335
BfrI CTTAAG 1 cut(s) 563
BfuI GTATCC 2 cut(s) 998, 1498
BglII AGATCT 2 cut(s) 274, 1556
Bme1390I CCNGG 2 cut(s) 323, 324
Bme18I GGWCC 1 cut(s) 1324
BmeT110I CYCGRG 5 cut(s) 74, 322, 824, 1320, 1838
BmgBI CACGTC 1 cut(s) 1884
BmgT120I GGNCC 3 cut(s) 837, 1324, 1851
BmiI GGNNCC 3 cut(s) 240, 1254, 1325
BmrFI CCNGG 2 cut(s) 323, 324
BmrI ACTGGG 2 cut(s) 219, 889
BmsI GCATC 3 cut(s) 1458, 1645, 1808
BmuI ACTGGG 2 cut(s) 219, 889
BpiI GAAGAC 1 cut(s) 882
BpmI CTGGAG 1 cut(s) 371
BpuEI CTTGAG 1 cut(s) 431
BpuMI CCSGG 2 cut(s) 323, 324
BsaBI GATNNNNATC 1 cut(s) 1670
BsaJI CCNNGG 3 cut(s) 75, 322, 1589
BsaWI WCCGGW 1 cut(s) 529
Bsc4I CCNNNNNNNGG 2 cut(s) 1087, 1497
Bse118I RCCGGY 1 cut(s) 302
Bse1I ACTGG 3 cut(s) 214, 632, 884
Bse8I GATNNNNATC 1 cut(s) 1670
BseDI CCNNGG 3 cut(s) 75, 322, 1589
BseGI GGATG 9 cut(s) 157, 515, 657, 676, 785, 1057, 1449, 1671, 1690
BseJI GATNNNNATC 1 cut(s) 1670
BseLI CCNNNNNNNGG 2 cut(s) 1087, 1497
BseMII CTCAG 3 cut(s) 609, 1544, 1553
BseNI ACTGG 3 cut(s) 214, 632, 884
BseRI GAGGAG 1 cut(s) 937
Bsh1236I CGCG 2 cut(s) 490, 1245
Bsh1285I CGRYCG 1 cut(s) 307
BshFI GGCC 3 cut(s) 784, 839, 1853
BsiEI CGRYCG 1 cut(s) 307
BsiHKAI GWGCWC 1 cut(s) 92
BsiHKCI CYCGRG 5 cut(s) 74, 322, 824, 1320, 1838
BsiSI CCGG 5 cut(s) 303, 323, 530, 705, 1719
BslFI GGGAC 1 cut(s) 1337
BslI CCNNNNNNNGG 2 cut(s) 1087, 1497
BsmAI GTCTC 2 cut(s) 321, 1335
BsmFI GGGAC 1 cut(s) 1337
BsnI GGCC 3 cut(s) 784, 839, 1853
BsoBI CYCGRG 5 cut(s) 74, 322, 824, 1320, 1838
Bsp1286I GDGCHC 1 cut(s) 92
Bsp1407I TGTACA 1 cut(s) 1363
Bsp143I GATC 3 cut(s) 274, 1288, 1556
Bsp68I TCGCGA 1 cut(s) 1245
BspACI CCGC 3 cut(s) 214, 384, 938
BspANI GGCC 3 cut(s) 784, 839, 1853
BspCNI CTCAG 3 cut(s) 610, 1545, 1552
BspFNI CGCG 2 cut(s) 490, 1245
BspLI GGNNCC 3 cut(s) 240, 1254, 1325
BspPI GGATC 1 cut(s) 1296
BspTI CTTAAG 1 cut(s) 563
BsrFI RCCGGY 1 cut(s) 302
BsrGI TGTACA 1 cut(s) 1363
BsrI ACTGG 3 cut(s) 214, 632, 884
BssAI RCCGGY 1 cut(s) 302
BssECI CCNNGG 3 cut(s) 75, 322, 1589
BssMI GATC 3 cut(s) 274, 1288, 1556
BssNAI GTATAC 1 cut(s) 1212
Bst1107I GTATAC 1 cut(s) 1212
Bst4CI ACNGT 1 cut(s) 571
Bst6I CTCTTC 3 cut(s) 458, 944, 1472
BstAFI CTTAAG 1 cut(s) 563
BstAPI GCANNNNNTGC 1 cut(s) 1631
BstAUI TGTACA 1 cut(s) 1363
BstC8I GCNNGC 2 cut(s) 27, 936
BstDEI CTNAG 3 cut(s) 618, 1539, 1553
BstF5I GGATG 9 cut(s) 157, 515, 657, 676, 785, 1057, 1449, 1671, 1690
BstFNI CGCG 2 cut(s) 490, 1245
BstHHI GCGC 1 cut(s) 1636
BstKTI GATC 3 cut(s) 277, 1291, 1559
BstMAI GTCTC 2 cut(s) 321, 1335
BstMBI GATC 3 cut(s) 274, 1288, 1556
BstMCI CGRYCG 1 cut(s) 307
BstMWI GCNNNNNNNGC 4 cut(s) 559, 628, 1631, 1642
BstSCI CCNGG 2 cut(s) 321, 322
BstUI CGCG 2 cut(s) 490, 1245
BstV2I GAAGAC 1 cut(s) 882
BstX2I RGATCY 3 cut(s) 274, 1288, 1556
BstYI RGATCY 3 cut(s) 274, 1288, 1556
BstZ17I GTATAC 1 cut(s) 1212
BsuI GTATCC 2 cut(s) 998, 1498
BsuRI GGCC 3 cut(s) 784, 839, 1853
BtgZI GCGATG 1 cut(s) 1260
BtrI CACGTC 1 cut(s) 1884
BtsCI GGATG 9 cut(s) 157, 515, 657, 676, 785, 1057, 1449, 1671, 1690
BtsI GCAGTG 1 cut(s) 134
BtsIMutI CAGTG 5 cut(s) 134, 181, 576, 639, 642
BtuMI TCGCGA 1 cut(s) 1245
Cac8I GCNNGC 2 cut(s) 27, 936
CfoI GCGC 1 cut(s) 1636
Cfr10I RCCGGY 1 cut(s) 302
Cfr13I GGNCC 3 cut(s) 837, 1324, 1851
Cfr9I CCCGGG 1 cut(s) 322
CseI GACGC 1 cut(s) 611
Csp6I GTAC 4 cut(s) 14, 131, 1025, 1364
CspCI CAANNNNNGTGG 2 cut(s) 666, 701
CviAII CATG 2 cut(s) 1462, 1760
CviQI GTAC 4 cut(s) 14, 131, 1025, 1364
DdeI CTNAG 3 cut(s) 618, 1539, 1553
DpnI GATC 3 cut(s) 276, 1290, 1558
DpnII GATC 3 cut(s) 274, 1288, 1556
DraI TTTAAA 1 cut(s) 979
EaeI YGGCCR 1 cut(s) 782
Eam1104I CTCTTC 3 cut(s) 458, 944, 1472
EarI CTCTTC 3 cut(s) 458, 944, 1472
Ecl136II GAGCTC 1 cut(s) 90
Eco24I GRGCYC 1 cut(s) 92
Eco47I GGWCC 1 cut(s) 1324
Eco53kI GAGCTC 1 cut(s) 90
Eco57I CTGAAG 5 cut(s) 68, 647, 665, 1492, 1661
Eco88I CYCGRG 5 cut(s) 74, 322, 824, 1320, 1838
EcoICRI GAGCTC 1 cut(s) 90
EcoO109I RGGNCCY 1 cut(s) 1324
EcoRI GAATTC 1 cut(s) 1769
EcoT38I GRGCYC 1 cut(s) 92
FaeI CATG 2 cut(s) 1465, 1763
FalI AAGNNNNNCTT 2 cut(s) 1773, 1805
FaqI GGGAC 1 cut(s) 1337
FatI CATG 2 cut(s) 1461, 1759
FauI CCCGC 2 cut(s) 207, 391
FauNDI CATATG 1 cut(s) 1194
FblI GTMKAC 1 cut(s) 1211
FokI GGATG 9 cut(s) 164, 502, 664, 683, 772, 1064, 1436, 1678, 1697
FriOI GRGCYC 1 cut(s) 92
FspAI RTGCGCAY 1 cut(s) 1635
FspI TGCGCA 1 cut(s) 1635
GlaI GCGC 1 cut(s) 1635
GsuI CTGGAG 1 cut(s) 371
HaeIII GGCC 3 cut(s) 784, 839, 1853
HapII CCGG 5 cut(s) 303, 323, 530, 705, 1719
HgaI GACGC 1 cut(s) 611
HhaI GCGC 1 cut(s) 1636
Hin1II CATG 2 cut(s) 1465, 1763
Hin6I GCGC 1 cut(s) 1634
HinP1I GCGC 1 cut(s) 1634
HincII GTYRAC 1 cut(s) 1569
HindII GTYRAC 1 cut(s) 1569
HinfI GANTC 6 cut(s) 407, 827, 855, 1421, 1841, 1869
HpaII CCGG 5 cut(s) 303, 323, 530, 705, 1719
HphI GGTGA 7 cut(s) 412, 709, 857, 895, 1426, 1723, 1871
Hpy166II GTNNAC 5 cut(s) 764, 1190, 1212, 1569, 1778
Hpy188I TCNGA 8 cut(s) 87, 540, 619, 627, 867, 1554, 1641, 1888
Hpy8I GTNNAC 5 cut(s) 764, 1190, 1212, 1569, 1778
HpyAV CCTTC 3 cut(s) 1091, 1331, 1535
HpyCH4III ACNGT 1 cut(s) 571
HpyCH4IV ACGT 1 cut(s) 1883
HpyCH4V TGCA 1 cut(s) 1504
HpyF10VI GCNNNNNNNGC 4 cut(s) 559, 628, 1631, 1642
HpyF3I CTNAG 3 cut(s) 618, 1539, 1553
HpySE526I ACGT 1 cut(s) 1883
Hsp92II CATG 2 cut(s) 1465, 1763
HspAI GCGC 1 cut(s) 1634
Kzo9I GATC 3 cut(s) 274, 1288, 1556
LmnI GCTCC 1 cut(s) 338
LweI GCATC 3 cut(s) 1458, 1645, 1808
MaeII ACGT 1 cut(s) 1883
MaeIII GTNAC 6 cut(s) 308, 418, 634, 715, 1432, 1729
MalI GATC 3 cut(s) 276, 1290, 1558
MboI GATC 3 cut(s) 274, 1288, 1556
MflI RGATCY 3 cut(s) 274, 1288, 1556
MhlI GDGCHC 1 cut(s) 92
MlsI TGGCCA 1 cut(s) 784
MluNI TGGCCA 1 cut(s) 784
MlyI GAGTC 4 cut(s) 836, 864, 1850, 1878
MmeI TCCRAC 2 cut(s) 852, 1720
Mox20I TGGCCA 1 cut(s) 784
MroXI GAANNNNTTC 2 cut(s) 57, 678
MscI TGGCCA 1 cut(s) 784
MseI TTAA 7 cut(s) 564, 605, 930, 978, 1133, 1175, 1930
Msp20I TGGCCA 1 cut(s) 784
MspA1I CMGCKG 1 cut(s) 553
MspCI CTTAAG 1 cut(s) 563
MspI CCGG 5 cut(s) 303, 323, 530, 705, 1719
MspR9I CCNGG 2 cut(s) 323, 324
MvnI CGCG 2 cut(s) 490, 1245
MwoI GCNNNNNNNGC 4 cut(s) 559, 628, 1631, 1642
NciI CCSGG 2 cut(s) 323, 324
NdeI CATATG 1 cut(s) 1194
NdeII GATC 3 cut(s) 274, 1288, 1556
NlaIII CATG 2 cut(s) 1465, 1763
NlaIV GGNNCC 3 cut(s) 240, 1254, 1325
NmeAIII GCCGAG 1 cut(s) 97
NmuCI GTSAC 6 cut(s) 308, 418, 634, 715, 1432, 1729
NruI TCGCGA 1 cut(s) 1245
NsbI TGCGCA 1 cut(s) 1635
PaeR7I CTCGAG 2 cut(s) 824, 1838
PdmI GAANNNNTTC 2 cut(s) 57, 678
PfeI GAWTC 2 cut(s) 407, 1421
PleI GAGTC 4 cut(s) 835, 863, 1849, 1877
PpsI GAGTC 4 cut(s) 835, 863, 1849, 1877
PpuMI RGGWCCY 1 cut(s) 1324
PsiI TTATAA 1 cut(s) 1154
Psp124BI GAGCTC 1 cut(s) 92
Psp5II RGGWCCY 1 cut(s) 1324
PspN4I GGNNCC 3 cut(s) 240, 1254, 1325
PspPI GGNCC 3 cut(s) 837, 1324, 1851
PspPPI RGGWCCY 1 cut(s) 1324
PspXI VCTCGAGB 2 cut(s) 824, 1838
PsuI RGATCY 3 cut(s) 274, 1288, 1556
PvuII CAGCTG 1 cut(s) 553
RruI TCGCGA 1 cut(s) 1245
RsaI GTAC 4 cut(s) 15, 132, 1026, 1365
RsaNI GTAC 4 cut(s) 14, 131, 1025, 1364
SacI GAGCTC 1 cut(s) 92
SaqAI TTAA 7 cut(s) 564, 605, 930, 978, 1133, 1175, 1930
Sau3AI GATC 3 cut(s) 274, 1288, 1556
Sau96I GGNCC 3 cut(s) 837, 1324, 1851
SchI GAGTC 4 cut(s) 836, 864, 1850, 1878
ScrFI CCNGG 2 cut(s) 323, 324
SduI GDGCHC 1 cut(s) 92
SfaNI GCATC 3 cut(s) 1458, 1645, 1808
Sfr274I CTCGAG 2 cut(s) 824, 1838
SinI GGWCC 1 cut(s) 1324
SlaI CTCGAG 2 cut(s) 824, 1838
SmaI CCCGGG 1 cut(s) 324
SmiI ATTTAAAT 1 cut(s) 979
SmlI CTYRAG 4 cut(s) 446, 563, 824, 1838
SmoI CTYRAG 4 cut(s) 446, 563, 824, 1838
SsiI CCGC 3 cut(s) 214, 384, 938
SspI AATATT 1 cut(s) 1219
SstI GAGCTC 1 cut(s) 92
StyD4I CCNGG 2 cut(s) 321, 322
SwaI ATTTAAAT 1 cut(s) 979
TaaI ACNGT 1 cut(s) 571
TaiI ACGT 1 cut(s) 1886
TaqI TCGA 5 cut(s) 825, 1062, 1161, 1419, 1839
TatI WGTACW 1 cut(s) 1363
TfiI GAWTC 2 cut(s) 407, 1421
Tru1I TTAA 7 cut(s) 564, 605, 930, 978, 1133, 1175, 1930
Tru9I TTAA 7 cut(s) 564, 605, 930, 978, 1133, 1175, 1930
TscAI CASTG 5 cut(s) 141, 181, 576, 639, 649
TseFI GTSAC 6 cut(s) 308, 418, 634, 715, 1432, 1729
Tsp45I GTSAC 6 cut(s) 308, 418, 634, 715, 1432, 1729
TspGWI ACGGA 1 cut(s) 605
TspMI CCCGGG 1 cut(s) 322
TspRI CASTG 5 cut(s) 141, 181, 576, 639, 649
Vha464I CTTAAG 1 cut(s) 563
VpaK11BI GGWCC 1 cut(s) 1324
XapI RAATTY 7 cut(s) 100, 197, 479, 755, 809, 1769, 1913
XbaI TCTAGA 2 cut(s) 227, 775
XhoI CTCGAG 2 cut(s) 824, 1838
XmaI CCCGGG 1 cut(s) 322
XmiI GTMKAC 1 cut(s) 1211
XmnI GAANNNNTTC 2 cut(s) 57, 678
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.