Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0003326

Physical Location & Seq

Genomic Coordinates Forward (+)

55995026 .. 56004597

Gene Structure 9572 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG327100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3297 bp

ATGGAGATGGACTCCCTCCCCAACGGCACCTCCGCCTCCCCGAGCCCAGGCCCAAGCCCAAGCCCGAGCCCAGCCACCGCACCCCCGCCGTCCTTGAAGCTCGGCCACCTCTCCGACTCTTTGAAGCTCGAGCACCAGTTCCTCCGAGTCCCCTTCGAGCACTACAAGAAGACGATCCGCGCCAACCACCGCGTCGCCGAGAAGGAGATGTCCGCCGTCATCAACGGCGTCAACGAAGCCGCCGACCGCGACGACATGCTCTGCGACGACGCCGTCAGTCACCTCAATTCCCTCGTCTCCAGGCTCCAAGGCCTCAAACGAAAGCTGGAAGAGGGGAGCAAGAGTGAGCACTTACAGGCGCAGAGGTGCCGGGCGAGGCTGGATCATTTAGAATCGGCAGATGTGGAGAATTTGTCAGAATGGAACAGTGTGCGCTTGAACCGGATCCTTGTGGACTATATGTTGAGAATGTCTTATTATGATACTGCGGTGAAGCTGGCCGAAAGCCAAAATATTCAGGATCTTGTTGATATCGATGTATTTCAAGAAGCCAGAAAGGTTATTGAAGCTCTCCAGAATAAGGAGGTAGGCCCTGCCCTAGCCTGGTGTGCTGAGAACAAGTCAAGGTTAAAGAAATCCAAGAGCAAATTGGAGTTTCAGCTAAGACTTCAAGAGTTTATAGAGTTGGTACGAGCTGAAAATAACTTACGAGCTATCACATATGCCCAGAAATACCTTGCACCATGGGGTACTACCTATATGAAAGAATTGCAGCGGGTCTTTGTAACAGTAGCTTATAAGAGTACTACCGAATGTGGTACATACAAGGTTTTATTTGAACCAAAACAATGGGATTACCTGGTTGACCAATTCAAACAGGAATTCTGCAAGTTATATGGCATGACACTTGAGCCTCTGCTGAATATTTATCTGCAAGCAGGACTCTCTGCTCTGAAAACTCCATATTGTTATGAAGATGATTGCACCAAGGAGGATCCACTGTCACAGGAAGGTTTCCGTAAGCTAGCCCTGCCATTACCTTATTCTAAGCAGCATCACTCAAAGCTTGTTTGCTACATAACTAAGGAACTGATGGACACGGAAAATCCACCACAAGTTCTGCCAAACGGCCGTGTCTACAGCACTAAGGCCCTGGAAGAAATGGCCAAGAAGAATGATGGGAAAATTACTTGTCCGAGGACAGGTGAGGTCTACAACTACACAGATCTGATGTATATGCAGACGGATGCTGCAATATTAGAGTCGAACAGACACAAGAGGAAAGTCAAAAGGGCTGTGGAAAAGAAAGGTCGAGAGTTAGACTTGTGGTTATTGAAAAATGGCATCCCTAGTAGAAGAAAAAATGAGATGATGGAAAGGGTACAGCAAGAGCTTGCCGAAAGGAGAAATGTTGATGTGGAAAACATTCTCTCTATTCTTCCCGAGGAACTTCAGAGCTATATCAAAAATTTGTTGCCATTGGCTCGGCTAAAGAAAGTACCACTGCTTCAAACTATGGATGAAGAAGTATTGAAAGAAATCAGTGAGTATCTTGAACCCAAAAAATTTGAGATTACTGGGCGGGAATATCTTTCTAGAGATGGGGAACCACTAGAAAAGATGATATTCATAGTTGAGGGAGATCTTGGCGTTGAAAGAAGAAATGTTGCCGGTCGTGACCTTTTATACCCGGGAGACTTCTATGGAGCAGAACTTCTGGAGTGGGTATCAGTATCAAATACCTCTTTTCCCGCCACATTACCCCTATCCATAGATTCTTCTTATGTCACCAACAATGATAGTGTTCTTTTTCTCAAGGCTGACGACTTGAAGAGTGTAGTATCTAAATTCAGGTCGCGTTTTAGCAAGGAGATCACACTTCCATCCAATTTTCAACCGGAAGTTCTGACTTCTTTCCAGCTGACTAGGCTTAAGACAGTGCCAATGTTTCAAGCTACGGACGAAGCCCTGTTAAAAGCAATCTCTGAGCGTCTGAAGCCAGTGACCTACACTGATGGGATGTATATAATCAAAAAGGATGAACCACTTCAGTTGATGTTCTTCGTCCTAGCCGGATATGTAGTCACCGAAAGTTATCCTCATTTTGTTGTTCGTATAGGAGAATTTTGTGGACAAGAACTTCTAGATTGGCCATCCACTACCTCATTTCCTATGGAATTTCCCACAGCACTCGAGTCTGCTAGGGCCAATGGTGATGTTAGAGTCCTTGCTCTGATGTTGGAAGACTGGGTGAGTGTAGTCAATAGATTTGAGTTTGGCAAACACAAGAGGAGAATTAAGCTGGCGGTGGAAAAGAAGAGTAAAGAGTTAGACTTGTGGTTATTTAAATCTGGTATCCCTAGTAGAAGAAAAAATGAGATAATGGAAAGGGTACGGCAAGAACTTGAAGAATATAGGGATGTTGATGTCGAGAATGTCCTCCCTATCCTTCCTGTGGAACTTCAAAGTTATATCAAAAGTTGTTTGCCAATTACTCGGTTAAAGAAAGTGCCAATGCTTAGAAGTGTCGATGAAGAAGTGTTGAGAGCAATATGTGAACATATGAAACCCATCAAGTATACAAATATTCGTGGGAGGGTATATCATTCTCGCGATGGGGAACCACTTGAAAAGATGATATTCATTGTTGAGGGGGATCTAGGTGTTGAAAGAAGAAACTCTGCTACTCGGGATCTTCTATATGAAGGAGACTTCTATGGAGAGGAACTTGTACATTGGGTATCAGTATCACATACATCTTTTCCTGCCAGATTACCCTTATCAGTCGATTCTGCTTATGTCACCAACAATGATAGCATCCTTATTCTCATGGCTGACGACTTGAAGAGTGTAGTATCCAAGTTCAGGTTGCACTTCAGCAAGGAGATAACCCTTCGACCTGACGAGCCAGAGCTTCTGAGATCTGTTCAGTTGACTATGCTAAAGAAAGTGCCTCGGTTTCAAACTATGGACGAAGAAATGTTGAAAGCAATCTGTGCGCATCTGAAGCCTATAACCTATACTGATGGGACGTATATCATCAAAAAGGATGAACCACTCCGACTGATGTTCTTTGTCCTAGCCGGATATGTAGTCACCGAAAGTTATCCTCACGCTGTTGTTCGTGTAGGAGAATTCTGTGGACAAGAACTTCTTGAATGGGCATCAACTATCTCCTTTCCTGCCAAATTACCCACAGCACTCGAGTCTGCTAGGGCCAATGGTGATGTTAGAGTCCTTGCCCTCACGTTTGACGATTGGTTTAGTGTAGTCCATAAATTTTCATCTAGCAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019538 GO:0019941 GO:0030163 GO:0032991 GO:0034657 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0071704 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

CLTH

Protein Analysis

1098

Amino Acids

126.09

Weight (kDa)

6.3

Isoelectric Point (pI)

45.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CTLH	PF10607	180 - 322	5.1e-47	CTLH/CRA C-terminal to LisH motif domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003326)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55070 AT3G55070
fragaria_vesca	FvH4_7g20680 FvH4_7g20680 FvH4_7g20680
malus_domestica	MD01G1115200.v1.1 MD01G1115600.v1.1 MD07G1183500.v1.1
prunus_persica	Prupe.2G222200_v2.0.a1 Prupe.2G222200_v2.0.a1 Prupe.2G222200_v2.0.a1
pyrus_communis	pycom01g14420 pycom07g17610
rosa_chinensis	RchiOBHm_Chr1g0364711 RchiOBHm_Chr1g0364821 RchiOBHm_Chr1g0364831
rosa_laevigata	RLG00000027464
rosa_multiflora	Rmu_co8292327.1_g000001 Rmu_sc0028465.1_g000001 Rmu_sc0028466.1_g000001 Rmu_ssc0000112.1_g000032
rosa_roxburghii	Rroxscaffold_4G00291710 Rroxscaffold_4G00291720 Rroxscaffold_4G00292120 Rroxscaffold_4G00292130 Rroxscaffold_4G00292150
rosa_rugosa	Rorug01G0318300 Rorug01G0318500
rosa_samantha	Rh1AG327100 Rh1BG288200 Rh1BG288300 Rh1CG304900 Rh1CG305000 Rh1DG319900
rosa_wichuraiana	Rw1G028970 Rw1G028980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	798
AasI	GACNNNNNNGTC	1 cut(s)	272
Acc16I	TGCGCA	1 cut(s)	3000
AccB1I	GGYRCC	2 cut(s)	26, 366
AccI	GTMKAC	3 cut(s)	1137, 1212, 2579
AccII	CGCG	5 cut(s)	180, 192, 249, 1858, 2613
AclWI	GGATC	9 cut(s)	169, 390, 439, 452, 528, 989, 1002, 2664, 2700
AcoI	YGGCCR	5 cut(s)	103, 498, 1129, 1164, 2150
AcsI	RAATTY	9 cut(s)	409, 881, 1468, 1565, 1847, 2123, 2177, 3134, 3278
AcuI	CTGAAG	5 cut(s)	1436, 2015, 2033, 2860, 3026
AcyI	GRCGYC	2 cut(s)	228, 270
AfaI	GTAC	8 cut(s)	690, 751, 805, 820, 1383, 1500, 2394, 2733
AfiI	CCNNNNNNNGG	6 cut(s)	47, 580, 603, 1202, 2455, 2865
AflII	CTTAAG	1 cut(s)	1931
AjnI	CCWGG	5 cut(s)	46, 299, 602, 858, 1152
Alw21I	GWGCWC	3 cut(s)	135, 162, 351
Alw26I	GTCTC	3 cut(s)	301, 1689, 2703
AlwI	GGATC	9 cut(s)	169, 390, 439, 452, 528, 989, 1002, 2664, 2700
Ama87I	CYCGRG	8 cut(s)	40, 64, 128, 1442, 1690, 2192, 2688, 3203
ApeKI	GCWGC	3 cut(s)	772, 1051, 1250
ApoI	RAATTY	9 cut(s)	409, 881, 1468, 1565, 1847, 2123, 2177, 3134, 3278
Asp700I	GAANNNNTTC	2 cut(s)	1425, 2046
AspLEI	GCGC	4 cut(s)	182, 361, 435, 3001
AspS9I	GGNCC	5 cut(s)	50, 590, 1150, 2205, 3216
AsuC2I	CCSGG	3 cut(s)	371, 1691, 1692
AsuNHI	GCTAGC	1 cut(s)	1024
AvaI	CYCGRG	8 cut(s)	40, 64, 128, 1442, 1690, 2192, 2688, 3203
BaeI	ACNNNNGTAYC	2 cut(s)	474, 507
BalI	TGGCCA	2 cut(s)	1166, 2152
BamHI	GGATCC	2 cut(s)	444, 994
BanI	GGYRCC	2 cut(s)	26, 366
BanII	GRGCYC	2 cut(s)	47, 71
BarI	GAAGNNNNNNTAC	2 cut(s)	1491, 1523
BbsI	GAAGAC	2 cut(s)	176, 2250
Bbv12I	GWGCWC	3 cut(s)	135, 162, 351
BbvI	GCAGC	3 cut(s)	784, 1063, 1237
BceAI	ACGGC	8 cut(s)	40, 73, 200, 241, 257, 1116, 1144, 2411
BciT130I	CCWGG	5 cut(s)	48, 301, 604, 860, 1154
BciVI	GTATCC	2 cut(s)	2366, 2866
BcnI	CCSGG	3 cut(s)	371, 1691, 1692
BcoDI	GTCTC	3 cut(s)	301, 1689, 2703
BfmI	CTRYAG	1 cut(s)	1138
BfrI	CTTAAG	1 cut(s)	1931
BfuI	GTATCC	2 cut(s)	2366, 2866
BglII	AGATCT	3 cut(s)	1225, 1642, 2921
BisI	GCNGC	4 cut(s)	240, 773, 1052, 1251
BlsI	GCNGC	4 cut(s)	241, 774, 1053, 1252
BmcAI	AGTACT	1 cut(s)	805
Bme1390I	CCNGG	8 cut(s)	48, 301, 371, 604, 860, 1154, 1691, 1692
BmeT110I	CYCGRG	8 cut(s)	40, 64, 128, 1442, 1690, 2192, 2688, 3203
BmgT120I	GGNCC	5 cut(s)	50, 590, 1150, 2205, 3216
BmiI	GGNNCC	7 cut(s)	28, 305, 368, 446, 996, 1608, 2622
BmrFI	CCNGG	8 cut(s)	48, 301, 371, 604, 860, 1154, 1691, 1692
BmrI	ACTGGG	2 cut(s)	1587, 2257
BmsI	GCATC	6 cut(s)	1063, 1237, 1353, 2826, 3010, 3173
BmtI	GCTAGC	1 cut(s)	1028
BmuI	ACTGGG	2 cut(s)	1587, 2257
BpiI	GAAGAC	2 cut(s)	176, 2250
BplI	GAGNNNNNCTC	1 cut(s)	28
BpmI	CTGGAG	3 cut(s)	283, 557, 1739
BpuEI	CTTGAG	2 cut(s)	929, 1799
BpuMI	CCSGG	3 cut(s)	371, 1691, 1692
Bsa29I	ATCGAT	1 cut(s)	534
BsaHI	GRCGYC	2 cut(s)	228, 270
BsaJI	CCNNGG	9 cut(s)	46, 307, 743, 987, 1152, 1196, 1443, 1690, 2954
BsaWI	WCCGGW	2 cut(s)	441, 1897
BsaXI	ACNNNNNCTCC	6 cut(s)	14, 44, 328, 358, 398, 428
Bsc4I	CCNNNNNNNGG	6 cut(s)	47, 580, 603, 1202, 2455, 2865
Bse118I	RCCGGY	1 cut(s)	1670
Bse1I	ACTGG	4 cut(s)	136, 1582, 2000, 2252
BseBI	CCWGG	5 cut(s)	48, 301, 604, 860, 1154
BseCI	ATCGAT	1 cut(s)	534
BseDI	CCNNGG	9 cut(s)	46, 307, 743, 987, 1152, 1196, 1443, 1690, 2954
BseLI	CCNNNNNNNGG	6 cut(s)	47, 580, 603, 1202, 2455, 2865
BseMII	CTCAG	3 cut(s)	603, 1977, 2909
BseNI	ACTGG	4 cut(s)	136, 1582, 2000, 2252
BseRI	GAGGAG	1 cut(s)	2305
BseX3I	CGGCCG	1 cut(s)	1129
BseXI	GCAGC	3 cut(s)	784, 1063, 1237
BseYI	CCCAGC	1 cut(s)	70
Bsh1236I	CGCG	5 cut(s)	180, 192, 249, 1858, 2613
Bsh1285I	CGRYCG	3 cut(s)	247, 1132, 1675
BshNI	GGYRCC	2 cut(s)	26, 366
BshVI	ATCGAT	1 cut(s)	534
BsiEI	CGRYCG	3 cut(s)	247, 1132, 1675
BsiHKAI	GWGCWC	3 cut(s)	135, 162, 351
BsiHKCI	CYCGRG	8 cut(s)	40, 64, 128, 1442, 1690, 2192, 2688, 3203
BsiSI	CCGG	7 cut(s)	370, 442, 1671, 1691, 1898, 2073, 3084
BslFI	GGGAC	2 cut(s)	134, 3043
BslI	CCNNNNNNNGG	6 cut(s)	47, 580, 603, 1202, 2455, 2865
BsmAI	GTCTC	3 cut(s)	301, 1689, 2703
BsmBI	CGTCTC	1 cut(s)	301
BsmFI	GGGAC	2 cut(s)	134, 3043
BsoBI	CYCGRG	8 cut(s)	40, 64, 128, 1442, 1690, 2192, 2688, 3203
Bsp1286I	GDGCHC	5 cut(s)	47, 71, 135, 162, 351
Bsp1407I	TGTACA	1 cut(s)	2731
Bsp19I	CCATGG	1 cut(s)	743
Bsp68I	TCGCGA	1 cut(s)	2613
BspCNI	CTCAG	3 cut(s)	604, 1978, 2910
BspDI	ATCGAT	1 cut(s)	534
BspFNI	CGCG	5 cut(s)	180, 192, 249, 1858, 2613
BspLI	GGNNCC	7 cut(s)	28, 305, 368, 446, 996, 1608, 2622
BspOI	GCTAGC	1 cut(s)	1028
BspPI	GGATC	9 cut(s)	169, 390, 439, 452, 528, 989, 1002, 2664, 2700
BspT107I	GGYRCC	2 cut(s)	26, 366
BspTI	CTTAAG	1 cut(s)	1931
BsrFI	RCCGGY	1 cut(s)	1670
BsrGI	TGTACA	1 cut(s)	2731
BsrI	ACTGG	4 cut(s)	136, 1582, 2000, 2252
BssAI	RCCGGY	1 cut(s)	1670
BssECI	CCNNGG	9 cut(s)	46, 307, 743, 987, 1152, 1196, 1443, 1690, 2954
BssNAI	GTATAC	1 cut(s)	2580
BssNI	GRCGYC	2 cut(s)	228, 270
BssT1I	CCWWGG	3 cut(s)	307, 743, 987
Bst1107I	GTATAC	1 cut(s)	2580
Bst2UI	CCWGG	5 cut(s)	48, 301, 604, 860, 1154
Bst4CI	ACNGT	4 cut(s)	428, 790, 1002, 1939
Bst6I	CTCTTC	4 cut(s)	324, 1826, 2312, 2840
BstACI	GRCGYC	2 cut(s)	228, 270
BstAFI	CTTAAG	1 cut(s)	1931
BstAPI	GCANNNNNTGC	1 cut(s)	2996
BstAUI	TGTACA	1 cut(s)	2731
BstC8I	GCNNGC	5 cut(s)	498, 936, 1026, 1395, 2304
BstDEI	CTNAG	8 cut(s)	612, 662, 1047, 1083, 1146, 1986, 2519, 2918
BstDSI	CCRYGG	1 cut(s)	743
BstFNI	CGCG	5 cut(s)	180, 192, 249, 1858, 2613
BstHHI	GCGC	4 cut(s)	182, 361, 435, 3001
BstMAI	GTCTC	3 cut(s)	301, 1689, 2703
BstMCI	CGRYCG	3 cut(s)	247, 1132, 1675
BstMWI	GCNNNNNNNGC	6 cut(s)	608, 1030, 1927, 1996, 2996, 3007
BstNI	CCWGG	5 cut(s)	48, 301, 604, 860, 1154
BstNSI	RCATGY	1 cut(s)	259
BstSCI	CCNGG	8 cut(s)	46, 299, 369, 602, 858, 1152, 1689, 1690
BstSFI	CTRYAG	1 cut(s)	1138
BstUI	CGCG	5 cut(s)	180, 192, 249, 1858, 2613
BstV1I	GCAGC	3 cut(s)	784, 1063, 1237
BstV2I	GAAGAC	2 cut(s)	176, 2250
BstX2I	RGATCY	8 cut(s)	444, 520, 994, 1225, 1642, 2656, 2692, 2921
BstXI	CCANNNNNNTGG	1 cut(s)	849
BstYI	RGATCY	8 cut(s)	444, 520, 994, 1225, 1642, 2656, 2692, 2921
BstZ17I	GTATAC	1 cut(s)	2580
BstZI	CGGCCG	1 cut(s)	1129
Bsu15I	ATCGAT	1 cut(s)	534
BsuI	GTATCC	2 cut(s)	2366, 2866
BsuTUI	ATCGAT	1 cut(s)	534
BtgI	CCRYGG	1 cut(s)	743
BtgZI	GCGATG	1 cut(s)	2628
BtsI	GCAGTG	1 cut(s)	1502
BtsIMutI	CAGTG	7 cut(s)	433, 998, 1502, 1549, 1944, 2007, 2010
BtuMI	TCGCGA	1 cut(s)	2613
Cac8I	GCNNGC	5 cut(s)	498, 936, 1026, 1395, 2304
CfoI	GCGC	4 cut(s)	182, 361, 435, 3001
Cfr10I	RCCGGY	1 cut(s)	1670
Cfr13I	GGNCC	5 cut(s)	50, 590, 1150, 2205, 3216
Cfr9I	CCCGGG	1 cut(s)	1690
ClaI	ATCGAT	1 cut(s)	534
CseI	GACGC	4 cut(s)	181, 217, 278, 1979
CsiI	ACCWGGT	1 cut(s)	858
Csp6I	GTAC	8 cut(s)	689, 750, 804, 819, 1382, 1499, 2393, 2732
CspCI	CAANNNNNGTGG	2 cut(s)	2034, 2069
CviAII	CATG	4 cut(s)	256, 744, 901, 2830
CviQI	GTAC	8 cut(s)	689, 750, 804, 819, 1382, 1499, 2393, 2732
DdeI	CTNAG	8 cut(s)	612, 662, 1047, 1083, 1146, 1986, 2519, 2918
DraI	TTTAAA	1 cut(s)	2347
DrdI	GACNNNNNNGTC	1 cut(s)	272
DseDI	GACNNNNNNGTC	1 cut(s)	272
EaeI	YGGCCR	5 cut(s)	103, 498, 1129, 1164, 2150
EagI	CGGCCG	1 cut(s)	1129
Eam1104I	CTCTTC	4 cut(s)	324, 1826, 2312, 2840
EarI	CTCTTC	4 cut(s)	324, 1826, 2312, 2840
EciI	GGCGGA	2 cut(s)	22, 202
EclXI	CGGCCG	1 cut(s)	1129
Eco130I	CCWWGG	3 cut(s)	307, 743, 987
Eco147I	AGGCCT	1 cut(s)	312
Eco24I	GRGCYC	2 cut(s)	47, 71
Eco32I	GATATC	1 cut(s)	532
Eco52I	CGGCCG	1 cut(s)	1129
Eco57I	CTGAAG	5 cut(s)	1436, 2015, 2033, 2860, 3026
Eco88I	CYCGRG	8 cut(s)	40, 64, 128, 1442, 1690, 2192, 2688, 3203
EcoO109I	RGGNCCY	2 cut(s)	590, 1150
EcoRI	GAATTC	2 cut(s)	881, 3134
EcoRII	CCWGG	5 cut(s)	46, 299, 602, 858, 1152
EcoRV	GATATC	1 cut(s)	532
EcoT14I	CCWWGG	3 cut(s)	307, 743, 987
EcoT38I	GRGCYC	2 cut(s)	47, 71
ErhI	CCWWGG	3 cut(s)	307, 743, 987
Esp3I	CGTCTC	1 cut(s)	301
FaeI	CATG	4 cut(s)	259, 747, 904, 2833
FalI	AAGNNNNNCTT	2 cut(s)	3138, 3170
FaqI	GGGAC	2 cut(s)	134, 3043
FatI	CATG	4 cut(s)	255, 743, 900, 2829
FauI	CCCGC	4 cut(s)	93, 768, 1575, 1759
FauNDI	CATATG	2 cut(s)	721, 2562
FblI	GTMKAC	3 cut(s)	1137, 1212, 2579
Fnu4HI	GCNGC	4 cut(s)	240, 773, 1052, 1251
FriOI	GRGCYC	2 cut(s)	47, 71
Fsp4HI	GCNGC	4 cut(s)	240, 773, 1052, 1251
FspAI	RTGCGCAY	1 cut(s)	3000
FspI	TGCGCA	1 cut(s)	3000
GlaI	GCGC	4 cut(s)	181, 360, 434, 3000
GluI	GCNGC	4 cut(s)	240, 773, 1052, 1251
GsaI	CCCAGC	1 cut(s)	74
GsuI	CTGGAG	3 cut(s)	283, 557, 1739
HapII	CCGG	7 cut(s)	370, 442, 1671, 1691, 1898, 2073, 3084
HgaI	GACGC	4 cut(s)	181, 217, 278, 1979
HhaI	GCGC	4 cut(s)	182, 361, 435, 3001
Hin1I	GRCGYC	2 cut(s)	228, 270
Hin1II	CATG	4 cut(s)	259, 747, 904, 2833
Hin6I	GCGC	4 cut(s)	180, 359, 433, 2999
HinP1I	GCGC	4 cut(s)	180, 359, 433, 2999
HincII	GTYRAC	3 cut(s)	232, 865, 2934
HindII	GTYRAC	3 cut(s)	232, 865, 2934
HindIII	AAGCTT	1 cut(s)	1064
HpaII	CCGG	7 cut(s)	370, 442, 1671, 1691, 1898, 2073, 3084
Hpy99I	CGWCG	4 cut(s)	197, 254, 269, 272
HpyAV	CCTTC	6 cut(s)	163, 196, 1004, 2459, 2699, 2903
HpyCH4III	ACNGT	4 cut(s)	428, 790, 1002, 1939
HpyCH4IV	ACGT	2 cut(s)	3032, 3248
HpyCH4V	TGCA	8 cut(s)	740, 772, 888, 934, 984, 1240, 1253, 2872
HpyF10VI	GCNNNNNNNGC	6 cut(s)	608, 1030, 1927, 1996, 2996, 3007
HpyF3I	CTNAG	8 cut(s)	612, 662, 1047, 1083, 1146, 1986, 2519, 2918
HpySE526I	ACGT	2 cut(s)	3032, 3248
Hsp92I	GRCGYC	2 cut(s)	228, 270
Hsp92II	CATG	4 cut(s)	259, 747, 904, 2833
HspAI	GCGC	4 cut(s)	180, 359, 433, 2999
LmnI	GCTCC	3 cut(s)	309, 336, 1706
Lsp1109I	GCAGC	3 cut(s)	784, 1063, 1237
LweI	GCATC	6 cut(s)	1063, 1237, 1353, 2826, 3010, 3173
MabI	ACCWGGT	1 cut(s)	858
MaeII	ACGT	2 cut(s)	3032, 3248
MaeIII	GTNAC	9 cut(s)	278, 784, 1002, 1676, 1786, 2002, 2083, 2800, 3094
MflI	RGATCY	8 cut(s)	444, 520, 994, 1225, 1642, 2656, 2692, 2921
MhlI	GDGCHC	5 cut(s)	47, 71, 135, 162, 351
MlsI	TGGCCA	2 cut(s)	1166, 2152
MluNI	TGGCCA	2 cut(s)	1166, 2152
MlyI	GAGTC	9 cut(s)	5, 110, 156, 936, 1271, 2204, 2232, 3215, 3243
MmeI	TCCRAC	3 cut(s)	138, 2220, 3085
Mox20I	TGGCCA	2 cut(s)	1166, 2152
MroXI	GAANNNNTTC	2 cut(s)	1425, 2046
MscI	TGGCCA	2 cut(s)	1166, 2152
MseI	TTAA	7 cut(s)	629, 1932, 1973, 2298, 2346, 2501, 3295
Msp20I	TGGCCA	2 cut(s)	1166, 2152
MspA1I	CMGCKG	2 cut(s)	775, 1921
MspCI	CTTAAG	1 cut(s)	1931
MspI	CCGG	7 cut(s)	370, 442, 1671, 1691, 1898, 2073, 3084
MspR9I	CCNGG	8 cut(s)	48, 301, 371, 604, 860, 1154, 1691, 1692
MvaI	CCWGG	5 cut(s)	48, 301, 604, 860, 1154
MvnI	CGCG	5 cut(s)	180, 192, 249, 1858, 2613
MwoI	GCNNNNNNNGC	6 cut(s)	608, 1030, 1927, 1996, 2996, 3007
NciI	CCSGG	3 cut(s)	371, 1691, 1692
NcoI	CCATGG	1 cut(s)	743
NdeI	CATATG	2 cut(s)	721, 2562
NheI	GCTAGC	1 cut(s)	1024
NlaIII	CATG	4 cut(s)	259, 747, 904, 2833
NlaIV	GGNNCC	7 cut(s)	28, 305, 368, 446, 996, 1608, 2622
NmeAIII	GCCGAG	3 cut(s)	81, 223, 1465
NmuCI	GTSAC	8 cut(s)	278, 1002, 1676, 1786, 2002, 2083, 2800, 3094
NruI	TCGCGA	1 cut(s)	2613
NsbI	TGCGCA	1 cut(s)	3000
NspI	RCATGY	1 cut(s)	259
PaeR7I	CTCGAG	3 cut(s)	128, 2192, 3203
PceI	AGGCCT	1 cut(s)	312
PcsI	WCGNNNNNNNCGW	2 cut(s)	231, 240
PdmI	GAANNNNTTC	2 cut(s)	1425, 2046
PfeI	GAWTC	3 cut(s)	392, 1775, 2789
PflFI	GACNNNGTC	1 cut(s)	272
PkrI	GCNGC	4 cut(s)	241, 774, 1053, 1252
PleI	GAGTC	9 cut(s)	5, 110, 155, 936, 1270, 2203, 2231, 3214, 3242
PpsI	GAGTC	9 cut(s)	5, 110, 155, 936, 1270, 2203, 2231, 3214, 3242
PsiI	TTATAA	1 cut(s)	798
Psp6I	CCWGG	5 cut(s)	46, 299, 602, 858, 1152
PspFI	CCCAGC	1 cut(s)	70
PspGI	CCWGG	5 cut(s)	46, 299, 602, 858, 1152
PspN4I	GGNNCC	7 cut(s)	28, 305, 368, 446, 996, 1608, 2622
PspPI	GGNCC	5 cut(s)	50, 590, 1150, 2205, 3216
PspXI	VCTCGAGB	3 cut(s)	128, 2192, 3203
PsuI	RGATCY	8 cut(s)	444, 520, 994, 1225, 1642, 2656, 2692, 2921
PsyI	GACNNNGTC	1 cut(s)	272
PvuII	CAGCTG	1 cut(s)	1921
RruI	TCGCGA	1 cut(s)	2613
RsaI	GTAC	8 cut(s)	690, 751, 805, 820, 1383, 1500, 2394, 2733
RsaNI	GTAC	8 cut(s)	689, 750, 804, 819, 1382, 1499, 2393, 2732
SaqAI	TTAA	7 cut(s)	629, 1932, 1973, 2298, 2346, 2501, 3295
SatI	GCNGC	4 cut(s)	240, 773, 1052, 1251
Sau96I	GGNCC	5 cut(s)	50, 590, 1150, 2205, 3216
ScaI	AGTACT	1 cut(s)	805
SchI	GAGTC	9 cut(s)	5, 110, 156, 936, 1271, 2204, 2232, 3215, 3243
ScrFI	CCNGG	8 cut(s)	48, 301, 371, 604, 860, 1154, 1691, 1692
SduI	GDGCHC	5 cut(s)	47, 71, 135, 162, 351
SexAI	ACCWGGT	1 cut(s)	858
SfaNI	GCATC	6 cut(s)	1063, 1237, 1353, 2826, 3010, 3173
SfcI	CTRYAG	1 cut(s)	1138
Sfr274I	CTCGAG	3 cut(s)	128, 2192, 3203
SlaI	CTCGAG	3 cut(s)	128, 2192, 3203
SmaI	CCCGGG	1 cut(s)	1692
SmiI	ATTTAAAT	1 cut(s)	2347
SmlI	CTYRAG	6 cut(s)	128, 908, 1814, 1931, 2192, 3203
SmoI	CTYRAG	6 cut(s)	128, 908, 1814, 1931, 2192, 3203
SseBI	AGGCCT	1 cut(s)	312
SspI	AATATT	4 cut(s)	514, 925, 1257, 2587
StuI	AGGCCT	1 cut(s)	312
StyD4I	CCNGG	8 cut(s)	46, 299, 369, 602, 858, 1152, 1689, 1690
StyI	CCWWGG	3 cut(s)	307, 743, 987
SwaI	ATTTAAAT	1 cut(s)	2347
TaaI	ACNGT	4 cut(s)	428, 790, 1002, 1939
TaiI	ACGT	2 cut(s)	3035, 3251
TatI	WGTACW	2 cut(s)	803, 2731
TauI	GCSGC	1 cut(s)	242
TfiI	GAWTC	3 cut(s)	392, 1775, 2789
Tru1I	TTAA	7 cut(s)	629, 1932, 1973, 2298, 2346, 2501, 3295
Tru9I	TTAA	7 cut(s)	629, 1932, 1973, 2298, 2346, 2501, 3295
TscAI	CASTG	7 cut(s)	433, 1005, 1509, 1549, 1944, 2007, 2017
TseFI	GTSAC	8 cut(s)	278, 1002, 1676, 1786, 2002, 2083, 2800, 3094
TseI	GCWGC	3 cut(s)	772, 1051, 1250
Tsp45I	GTSAC	8 cut(s)	278, 1002, 1676, 1786, 2002, 2083, 2800, 3094
TspGWI	ACGGA	4 cut(s)	1007, 1115, 1259, 1973
TspMI	CCCGGG	1 cut(s)	1690
TspRI	CASTG	7 cut(s)	433, 1005, 1509, 1549, 1944, 2007, 2017
Tth111I	GACNNNGTC	1 cut(s)	272
Vha464I	CTTAAG	1 cut(s)	1931
XapI	RAATTY	9 cut(s)	409, 881, 1468, 1565, 1847, 2123, 2177, 3134, 3278
XbaI	TCTAGA	2 cut(s)	1595, 2143
XceI	RCATGY	1 cut(s)	259
XcmI	CCANNNNNNNNNTGG	1 cut(s)	646
XhoI	CTCGAG	3 cut(s)	128, 2192, 3203
XmaI	CCCGGG	1 cut(s)	1690
XmiI	GTMKAC	3 cut(s)	1137, 1212, 2579
XmnI	GAANNNNTTC	2 cut(s)	1425, 2046
ZrmI	AGTACT	1 cut(s)	805

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.