Rmu_sc0028465.1_g000001

Macrophage erythroblast

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0028465.1
Physical Location & Seq
Forward (+)
245 .. 3592
3348 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0028465.1_g000001.1.cds

Sequence Viewer

Length: 1251 bp
atggagatggactccctccccaacggcacctccgcctccccgagcccaggcccaagcccaagcccgagcccagccaccgcacccccgccgtccttgaagctcggccacctctccgactccttgaagctcgagcaccagttcctccgagtccccttcgagcactacaagaagacgatccgcgccaaccaccgcgtcgccgagaaggagatgtccgccgtcatcaacggcgtcaacgaagccgccgaccgcgacgacatgctctgcgacgacgccgttagtcacctcaattccctcgtctccaggctccaaggcctcaaacgaaagctggaagaggggagcaagactgagcacttacaggcgcagaggtgccgggcgaggctggatcatttagaatcggcagatgtggagaatttgtcagaatggaacaatgtgcgcttgaaccggatccttgtggactatatgttgagaatgtcttattatgatactgcggtgaagctggccgaaagccaaaatattcaggatcttgttgatattgatgtatttcaagaagccagaaaggttattgaagctctccagaataaggaggtaggccctgccctagcctggtgtgctgagaacaagtcaaggttaaagaaatccaagagcaaattggagtttcagctaagacttcaagagtttatagagttggtacgagctgaaaataacctacgagctatcacatatgcccagaaataccttgcaccatggggtactacctatatgaaagaattgcagcgggtctttgtaacagtagcttataagagtactaccgaatgtggtacatacaaggttttatttgaaccaaaacaatgggattacctggttgaccaattcaaacaggaattctgcaagttatatggcatgacacttgagcctctgctgaatatttatctgcaagcaggactctctgctctgaaaactccatattgttatgaagatgattgcaccaaggaggatccactgtcacaggaaggtttccgtaagctagccctgccattaccttattctaagcagcatcactcaaagcttgtttgctacataactaaggaactgatggacacggaaaatccaccacaagttctgccaaacggccgtgtctacagcactaaggccctggaagaaatggccaagaagaatgatgggaaaattacttgtccgaggacaggtgaggtctacaactacacagatctggtgaaggcatatatatcatga

Protein Analysis

416

Amino Acids

47.5

Weight (kDa)

6.77

Isoelectric Point (pI)

48.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 798
AccB1I GGYRCC 2 cut(s) 26, 366
AccI GTMKAC 2 cut(s) 1137, 1212
AccII CGCG 3 cut(s) 180, 192, 249
AclWI GGATC 7 cut(s) 169, 390, 439, 452, 528, 989, 1002
AcoI YGGCCR 4 cut(s) 103, 498, 1129, 1164
AcsI RAATTY 2 cut(s) 409, 881
AcyI GRCGYC 2 cut(s) 228, 270
AfaI GTAC 4 cut(s) 690, 751, 805, 820
AfiI CCNNNNNNNGG 4 cut(s) 47, 580, 603, 1202
AgsI TTSAA 8 cut(s) 97, 124, 439, 545, 566, 671, 839, 874
AjnI CCWGG 5 cut(s) 46, 299, 602, 858, 1152
Alw21I GWGCWC 3 cut(s) 135, 162, 351
Alw26I GTCTC 1 cut(s) 301
AlwI GGATC 7 cut(s) 169, 390, 439, 452, 528, 989, 1002
Ama87I CYCGRG 3 cut(s) 40, 64, 128
AoxI GGCC 8 cut(s) 49, 103, 310, 498, 589, 1129, 1149, 1164
ApeKI GCWGC 2 cut(s) 772, 1051
ApoI RAATTY 2 cut(s) 409, 881
AspLEI GCGC 3 cut(s) 182, 361, 435
AspS9I GGNCC 3 cut(s) 50, 590, 1150
AsuC2I CCSGG 1 cut(s) 371
AsuHPI GGTGA 4 cut(s) 272, 502, 1217, 1243
AsuNHI GCTAGC 1 cut(s) 1024
AvaI CYCGRG 3 cut(s) 40, 64, 128
BaeI ACNNNNGTAYC 2 cut(s) 474, 507
BalI TGGCCA 1 cut(s) 1166
BamHI GGATCC 2 cut(s) 444, 994
BanI GGYRCC 2 cut(s) 26, 366
BanII GRGCYC 2 cut(s) 47, 71
BbsI GAAGAC 1 cut(s) 176
Bbv12I GWGCWC 3 cut(s) 135, 162, 351
BbvI GCAGC 2 cut(s) 784, 1063
BccI CCATC 2 cut(s) 1087, 1172
BceAI ACGGC 7 cut(s) 40, 73, 200, 241, 257, 1116, 1144
BciT130I CCWGG 5 cut(s) 48, 301, 604, 860, 1154
BcnI CCSGG 1 cut(s) 371
BcoDI GTCTC 1 cut(s) 301
BfaI CTAG 2 cut(s) 599, 1025
BfmI CTRYAG 1 cut(s) 1138
BglII AGATCT 1 cut(s) 1225
BisI GCNGC 3 cut(s) 240, 773, 1052
BlsI GCNGC 3 cut(s) 241, 774, 1053
BmcAI AGTACT 1 cut(s) 805
Bme1390I CCNGG 6 cut(s) 48, 301, 371, 604, 860, 1154
BmeT110I CYCGRG 3 cut(s) 40, 64, 128
BmgT120I GGNCC 3 cut(s) 50, 590, 1150
BmiI GGNNCC 5 cut(s) 28, 305, 368, 446, 996
BmrFI CCNGG 6 cut(s) 48, 301, 371, 604, 860, 1154
BmsI GCATC 1 cut(s) 1063
BmtI GCTAGC 1 cut(s) 1028
BpiI GAAGAC 1 cut(s) 176
BplI GAGNNNNNCTC 1 cut(s) 28
BpmI CTGGAG 2 cut(s) 283, 557
BpuEI CTTGAG 1 cut(s) 929
BpuMI CCSGG 1 cut(s) 371
BsaHI GRCGYC 2 cut(s) 228, 270
BsaJI CCNNGG 6 cut(s) 46, 307, 743, 987, 1152, 1196
BsaWI WCCGGW 1 cut(s) 441
BsaXI ACNNNNNCTCC 4 cut(s) 14, 44, 398, 428
Bsc4I CCNNNNNNNGG 4 cut(s) 47, 580, 603, 1202
Bse1I ACTGG 1 cut(s) 136
BseBI CCWGG 5 cut(s) 48, 301, 604, 860, 1154
BseDI CCNNGG 6 cut(s) 46, 307, 743, 987, 1152, 1196
BseLI CCNNNNNNNGG 4 cut(s) 47, 580, 603, 1202
BseMII CTCAG 2 cut(s) 336, 603
BseNI ACTGG 1 cut(s) 136
BseX3I CGGCCG 1 cut(s) 1129
BseXI GCAGC 2 cut(s) 784, 1063
BseYI CCCAGC 1 cut(s) 70
Bsh1236I CGCG 3 cut(s) 180, 192, 249
Bsh1285I CGRYCG 2 cut(s) 247, 1132
BshFI GGCC 8 cut(s) 51, 105, 312, 500, 591, 1131, 1151, 1166
BshNI GGYRCC 2 cut(s) 26, 366
BsiEI CGRYCG 2 cut(s) 247, 1132
BsiHKAI GWGCWC 3 cut(s) 135, 162, 351
BsiHKCI CYCGRG 3 cut(s) 40, 64, 128
BsiSI CCGG 2 cut(s) 370, 442
BslFI GGGAC 1 cut(s) 134
BslI CCNNNNNNNGG 4 cut(s) 47, 580, 603, 1202
BsmAI GTCTC 1 cut(s) 301
BsmBI CGTCTC 1 cut(s) 301
BsmFI GGGAC 1 cut(s) 134
BsnI GGCC 8 cut(s) 51, 105, 312, 500, 591, 1131, 1151, 1166
BsoBI CYCGRG 3 cut(s) 40, 64, 128
Bsp1286I GDGCHC 5 cut(s) 47, 71, 135, 162, 351
Bsp143I GATC 6 cut(s) 174, 382, 444, 520, 994, 1225
Bsp19I CCATGG 1 cut(s) 743
BspANI GGCC 8 cut(s) 51, 105, 312, 500, 591, 1131, 1151, 1166
BspCNI CTCAG 2 cut(s) 337, 604
BspFNI CGCG 3 cut(s) 180, 192, 249
BspHI TCATGA 1 cut(s) 1247
BspLI GGNNCC 5 cut(s) 28, 305, 368, 446, 996
BspOI GCTAGC 1 cut(s) 1028
BspPI GGATC 7 cut(s) 169, 390, 439, 452, 528, 989, 1002
BspT107I GGYRCC 2 cut(s) 26, 366
BsrI ACTGG 1 cut(s) 136
BssECI CCNNGG 6 cut(s) 46, 307, 743, 987, 1152, 1196
BssMI GATC 6 cut(s) 174, 382, 444, 520, 994, 1225
BssNI GRCGYC 2 cut(s) 228, 270
BssT1I CCWWGG 3 cut(s) 307, 743, 987
Bst2UI CCWGG 5 cut(s) 48, 301, 604, 860, 1154
Bst4CI ACNGT 2 cut(s) 790, 1002
Bst6I CTCTTC 1 cut(s) 324
BstACI GRCGYC 2 cut(s) 228, 270
BstC8I GCNNGC 3 cut(s) 498, 936, 1026
BstDEI CTNAG 6 cut(s) 345, 612, 662, 1047, 1083, 1146
BstDSI CCRYGG 1 cut(s) 743
BstFNI CGCG 3 cut(s) 180, 192, 249
BstHHI GCGC 3 cut(s) 182, 361, 435
BstKTI GATC 6 cut(s) 177, 385, 447, 523, 997, 1228
BstMAI GTCTC 1 cut(s) 301
BstMBI GATC 6 cut(s) 174, 382, 444, 520, 994, 1225
BstMCI CGRYCG 2 cut(s) 247, 1132
BstMWI GCNNNNNNNGC 2 cut(s) 608, 1030
BstNI CCWGG 5 cut(s) 48, 301, 604, 860, 1154
BstNSI RCATGY 1 cut(s) 259
BstSCI CCNGG 6 cut(s) 46, 299, 369, 602, 858, 1152
BstSFI CTRYAG 1 cut(s) 1138
BstUI CGCG 3 cut(s) 180, 192, 249
BstV1I GCAGC 2 cut(s) 784, 1063
BstV2I GAAGAC 1 cut(s) 176
BstX2I RGATCY 4 cut(s) 444, 520, 994, 1225
BstXI CCANNNNNNTGG 1 cut(s) 849
BstYI RGATCY 4 cut(s) 444, 520, 994, 1225
BstZI CGGCCG 1 cut(s) 1129
BsuRI GGCC 8 cut(s) 51, 105, 312, 500, 591, 1131, 1151, 1166
BtgI CCRYGG 1 cut(s) 743
BtsIMutI CAGTG 1 cut(s) 998
Cac8I GCNNGC 3 cut(s) 498, 936, 1026
CciI TCATGA 1 cut(s) 1247
CfoI GCGC 3 cut(s) 182, 361, 435
Cfr13I GGNCC 3 cut(s) 50, 590, 1150
CseI GACGC 3 cut(s) 181, 217, 278
CsiI ACCWGGT 1 cut(s) 858
Csp6I GTAC 4 cut(s) 689, 750, 804, 819
CviAII CATG 4 cut(s) 256, 744, 901, 1248
CviQI GTAC 4 cut(s) 689, 750, 804, 819
DdeI CTNAG 6 cut(s) 345, 612, 662, 1047, 1083, 1146
DpnI GATC 6 cut(s) 176, 384, 446, 522, 996, 1227
DpnII GATC 6 cut(s) 174, 382, 444, 520, 994, 1225
EaeI YGGCCR 4 cut(s) 103, 498, 1129, 1164
EagI CGGCCG 1 cut(s) 1129
Eam1104I CTCTTC 1 cut(s) 324
EarI CTCTTC 1 cut(s) 324
EciI GGCGGA 2 cut(s) 22, 202
EclXI CGGCCG 1 cut(s) 1129
Eco130I CCWWGG 3 cut(s) 307, 743, 987
Eco147I AGGCCT 1 cut(s) 312
Eco24I GRGCYC 2 cut(s) 47, 71
Eco52I CGGCCG 1 cut(s) 1129
Eco88I CYCGRG 3 cut(s) 40, 64, 128
EcoO109I RGGNCCY 2 cut(s) 590, 1150
EcoRI GAATTC 1 cut(s) 881
EcoRII CCWGG 5 cut(s) 46, 299, 602, 858, 1152
EcoT14I CCWWGG 3 cut(s) 307, 743, 987
EcoT38I GRGCYC 2 cut(s) 47, 71
ErhI CCWWGG 3 cut(s) 307, 743, 987
Esp3I CGTCTC 1 cut(s) 301
FaeI CATG 4 cut(s) 259, 747, 904, 1251
FaqI GGGAC 1 cut(s) 134
FatI CATG 4 cut(s) 255, 743, 900, 1247
FauI CCCGC 2 cut(s) 93, 768
FauNDI CATATG 1 cut(s) 721
FblI GTMKAC 2 cut(s) 1137, 1212
Fnu4HI GCNGC 3 cut(s) 240, 773, 1052
FriOI GRGCYC 2 cut(s) 47, 71
Fsp4HI GCNGC 3 cut(s) 240, 773, 1052
FspBI CTAG 2 cut(s) 599, 1025
GlaI GCGC 3 cut(s) 181, 360, 434
GluI GCNGC 3 cut(s) 240, 773, 1052
GsaI CCCAGC 1 cut(s) 74
GsuI CTGGAG 2 cut(s) 283, 557
HaeIII GGCC 8 cut(s) 51, 105, 312, 500, 591, 1131, 1151, 1166
HapII CCGG 2 cut(s) 370, 442
HgaI GACGC 3 cut(s) 181, 217, 278
HhaI GCGC 3 cut(s) 182, 361, 435
Hin1I GRCGYC 2 cut(s) 228, 270
Hin1II CATG 4 cut(s) 259, 747, 904, 1251
Hin6I GCGC 3 cut(s) 180, 359, 433
HinP1I GCGC 3 cut(s) 180, 359, 433
HincII GTYRAC 2 cut(s) 232, 865
HindII GTYRAC 2 cut(s) 232, 865
HindIII AAGCTT 1 cut(s) 1064
HinfI GANTC 5 cut(s) 11, 116, 147, 392, 942
HpaII CCGG 2 cut(s) 370, 442
HphI GGTGA 4 cut(s) 272, 502, 1217, 1243
Hpy166II GTNNAC 5 cut(s) 232, 454, 865, 1138, 1213
Hpy188I TCNGA 5 cut(s) 115, 146, 418, 954, 1197
Hpy188III TCNNGA 5 cut(s) 518, 545, 574, 671, 1248
Hpy8I GTNNAC 5 cut(s) 232, 454, 865, 1138, 1213
Hpy99I CGWCG 4 cut(s) 197, 254, 269, 272
HpyAV CCTTC 4 cut(s) 163, 196, 1004, 1228
HpyCH4III ACNGT 2 cut(s) 790, 1002
HpyCH4V TGCA 5 cut(s) 740, 772, 888, 934, 984
HpyF10VI GCNNNNNNNGC 2 cut(s) 608, 1030
HpyF3I CTNAG 6 cut(s) 345, 612, 662, 1047, 1083, 1146
Hsp92I GRCGYC 2 cut(s) 228, 270
Hsp92II CATG 4 cut(s) 259, 747, 904, 1251
HspAI GCGC 3 cut(s) 180, 359, 433
Kzo9I GATC 6 cut(s) 174, 382, 444, 520, 994, 1225
LmnI GCTCC 2 cut(s) 309, 336
Lsp1109I GCAGC 2 cut(s) 784, 1063
LweI GCATC 1 cut(s) 1063
MabI ACCWGGT 1 cut(s) 858
MaeI CTAG 2 cut(s) 599, 1025
MaeIII GTNAC 3 cut(s) 278, 784, 1002
MalI GATC 6 cut(s) 176, 384, 446, 522, 996, 1227
MboI GATC 6 cut(s) 174, 382, 444, 520, 994, 1225
MboII GAAGA 5 cut(s) 181, 341, 986, 1169, 1183
MflI RGATCY 4 cut(s) 444, 520, 994, 1225
MhlI GDGCHC 5 cut(s) 47, 71, 135, 162, 351
MlsI TGGCCA 1 cut(s) 1166
MluCI AATT 7 cut(s) 286, 409, 647, 767, 869, 881, 1185
MluNI TGGCCA 1 cut(s) 1166
MlyI GAGTC 4 cut(s) 5, 110, 156, 936
MmeI TCCRAC 1 cut(s) 138
Mox20I TGGCCA 1 cut(s) 1166
MscI TGGCCA 1 cut(s) 1166
MseI TTAA 1 cut(s) 629
Msp20I TGGCCA 1 cut(s) 1166
MspA1I CMGCKG 1 cut(s) 775
MspI CCGG 2 cut(s) 370, 442
MspR9I CCNGG 6 cut(s) 48, 301, 371, 604, 860, 1154
MvaI CCWGG 5 cut(s) 48, 301, 604, 860, 1154
MvnI CGCG 3 cut(s) 180, 192, 249
MwoI GCNNNNNNNGC 2 cut(s) 608, 1030
NciI CCSGG 1 cut(s) 371
NcoI CCATGG 1 cut(s) 743
NdeI CATATG 1 cut(s) 721
NdeII GATC 6 cut(s) 174, 382, 444, 520, 994, 1225
NheI GCTAGC 1 cut(s) 1024
NlaIII CATG 4 cut(s) 259, 747, 904, 1251
NlaIV GGNNCC 5 cut(s) 28, 305, 368, 446, 996
NmeAIII GCCGAG 2 cut(s) 81, 223
NmuCI GTSAC 2 cut(s) 278, 1002
NspI RCATGY 1 cut(s) 259
PaeR7I CTCGAG 1 cut(s) 128
PagI TCATGA 1 cut(s) 1247
PceI AGGCCT 1 cut(s) 312
PcsI WCGNNNNNNNCGW 2 cut(s) 231, 240
PfeI GAWTC 1 cut(s) 392
PkrI GCNGC 3 cut(s) 241, 774, 1053
PleI GAGTC 4 cut(s) 5, 110, 155, 936
PpsI GAGTC 4 cut(s) 5, 110, 155, 936
PsiI TTATAA 1 cut(s) 798
Psp6I CCWGG 5 cut(s) 46, 299, 602, 858, 1152
PspFI CCCAGC 1 cut(s) 70
PspGI CCWGG 5 cut(s) 46, 299, 602, 858, 1152
PspN4I GGNNCC 5 cut(s) 28, 305, 368, 446, 996
PspPI GGNCC 3 cut(s) 50, 590, 1150
PspXI VCTCGAGB 1 cut(s) 128
PsuI RGATCY 4 cut(s) 444, 520, 994, 1225
RsaI GTAC 4 cut(s) 690, 751, 805, 820
RsaNI GTAC 4 cut(s) 689, 750, 804, 819
SaqAI TTAA 1 cut(s) 629
SatI GCNGC 3 cut(s) 240, 773, 1052
Sau3AI GATC 6 cut(s) 174, 382, 444, 520, 994, 1225
Sau96I GGNCC 3 cut(s) 50, 590, 1150
ScaI AGTACT 1 cut(s) 805
SchI GAGTC 4 cut(s) 5, 110, 156, 936
ScrFI CCNGG 6 cut(s) 48, 301, 371, 604, 860, 1154
SduI GDGCHC 5 cut(s) 47, 71, 135, 162, 351
SexAI ACCWGGT 1 cut(s) 858
SfaNI GCATC 1 cut(s) 1063
SfcI CTRYAG 1 cut(s) 1138
Sfr274I CTCGAG 1 cut(s) 128
SlaI CTCGAG 1 cut(s) 128
SmlI CTYRAG 2 cut(s) 128, 908
SmoI CTYRAG 2 cut(s) 128, 908
Sse9I AATT 7 cut(s) 286, 409, 647, 767, 869, 881, 1185
SseBI AGGCCT 1 cut(s) 312
SspI AATATT 2 cut(s) 514, 925
SspMI CTAG 2 cut(s) 599, 1025
StuI AGGCCT 1 cut(s) 312
StyD4I CCNGG 6 cut(s) 46, 299, 369, 602, 858, 1152
StyI CCWWGG 3 cut(s) 307, 743, 987
TaaI ACNGT 2 cut(s) 790, 1002
TaqI TCGA 2 cut(s) 129, 156
TasI AATT 7 cut(s) 286, 409, 647, 767, 869, 881, 1185
TatI WGTACW 1 cut(s) 803
TauI GCSGC 1 cut(s) 242
TfiI GAWTC 1 cut(s) 392
Tru1I TTAA 1 cut(s) 629
Tru9I TTAA 1 cut(s) 629
TscAI CASTG 1 cut(s) 1005
TseFI GTSAC 2 cut(s) 278, 1002
TseI GCWGC 2 cut(s) 772, 1051
Tsp45I GTSAC 2 cut(s) 278, 1002
TspDTI ATGAA 2 cut(s) 776, 987
TspGWI ACGGA 2 cut(s) 1007, 1115
TspRI CASTG 1 cut(s) 1005
XapI RAATTY 2 cut(s) 409, 881
XceI RCATGY 1 cut(s) 259
XcmI CCANNNNNNNNNTGG 1 cut(s) 646
XhoI CTCGAG 1 cut(s) 128
XmiI GTMKAC 2 cut(s) 1137, 1212
XspI CTAG 2 cut(s) 599, 1025
ZrmI AGTACT 1 cut(s) 805
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.